Wall clock time and date at job start Sat Apr 11 2020 07:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81403 * 103.00161 * 2 1 4 4 C 1.52998 * 109.47338 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.46975 * 179.97438 * 4 3 2 6 6 O 1.21280 * 119.99926 * 0.02562 * 5 4 3 7 7 N 1.34774 * 119.99959 * 179.97438 * 5 4 3 8 8 C 1.47065 * 136.05922 * 354.04561 * 7 5 4 9 9 C 1.53235 * 88.08458 * 207.20181 * 8 7 5 10 10 C 1.47069 * 136.05719 * 174.41210 * 7 5 4 11 11 H 1.09004 * 113.46548 * 267.68708 * 10 7 5 12 12 C 1.52993 * 113.46889 * 38.06357 * 10 7 5 13 13 N 1.46501 * 109.47376 * 185.42862 * 12 10 7 14 14 C 1.46499 * 119.99708 * 90.49741 * 13 12 10 15 15 C 1.34774 * 120.00066 * 270.49792 * 13 12 10 16 16 O 1.21277 * 120.00116 * 359.97438 * 15 13 12 17 17 C 1.50698 * 119.99866 * 179.97438 * 15 13 12 18 18 S 1.81002 * 109.47024 * 179.97438 * 17 15 13 19 19 C 1.76206 * 100.00011 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99859 * 359.97438 * 19 18 17 21 21 C 1.38800 * 119.99819 * 180.02562 * 19 18 17 22 22 N 1.31624 * 120.00210 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99716 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47175 * 90.00202 * 23 21 19 25 25 H 1.48495 * 109.47168 * 210.00014 * 23 21 19 26 26 H 1.48499 * 109.47210 * 330.00088 * 23 21 19 27 27 H 1.08995 * 109.47040 * 299.99568 * 1 2 3 28 28 H 1.08995 * 109.47583 * 59.99852 * 1 2 3 29 29 H 1.09004 * 109.46798 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46838 * 59.99671 * 3 2 1 31 31 H 1.08998 * 109.46920 * 300.00660 * 3 2 1 32 32 H 1.09000 * 109.46856 * 60.00198 * 4 3 2 33 33 H 1.09002 * 109.46932 * 299.99734 * 4 3 2 34 34 H 1.09004 * 113.46633 * 321.93269 * 8 7 5 35 35 H 1.08999 * 113.46614 * 92.37239 * 8 7 5 36 36 H 1.08997 * 114.32450 * 220.47263 * 9 8 7 37 37 H 1.09003 * 114.02131 * 87.71437 * 9 8 7 38 38 H 1.08999 * 109.47343 * 305.43349 * 12 10 7 39 39 H 1.09008 * 109.47017 * 65.42924 * 12 10 7 40 40 H 1.08991 * 109.47365 * 87.07446 * 14 13 12 41 41 H 1.09009 * 109.46909 * 207.07122 * 14 13 12 42 42 H 1.09006 * 109.47407 * 327.06617 * 14 13 12 43 43 H 1.09003 * 109.47040 * 299.99886 * 17 15 13 44 44 H 1.08996 * 109.47499 * 60.00137 * 17 15 13 45 45 H 0.97002 * 120.00077 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9400 -0.0006 5 6 4.0812 3.4084 -0.0013 6 8 3.1942 4.2355 -0.0008 7 7 5.3701 3.8025 -0.0014 8 6 6.6795 3.1415 0.1048 9 6 7.2313 4.4435 0.6952 10 6 6.0857 5.0834 -0.1013 11 1 6.3607 5.3485 -1.1222 12 6 5.3928 6.2280 0.6406 13 7 6.1041 7.4816 0.3781 14 6 5.7136 8.3213 -0.7571 15 6 7.1175 7.8622 1.1808 16 8 7.4404 7.1673 2.1208 17 6 7.8494 9.1515 0.9104 18 16 9.1452 9.3817 2.1531 19 6 9.8195 10.9168 1.6112 20 1 9.4096 11.4099 0.7421 21 6 10.8781 11.4917 2.3006 22 7 11.3786 10.8900 3.3589 23 14 11.5934 13.1187 1.7257 24 1 10.8775 14.2368 2.3909 25 1 13.0354 13.1766 2.0755 26 1 11.4360 13.2362 0.2538 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8031 2.2371 0.8900 31 1 1.8030 2.2371 -0.8899 32 1 4.1608 1.4705 -0.8909 33 1 4.1616 1.4703 0.8892 34 1 6.6897 2.3090 0.8084 35 1 7.1151 2.8836 -0.8605 36 1 8.2264 4.7111 0.3401 37 1 7.1218 4.5217 1.7769 38 1 4.3631 6.3150 0.2940 39 1 5.3997 6.0237 1.7114 40 1 4.9154 8.9974 -0.4513 41 1 6.5732 8.9020 -1.0921 42 1 5.3620 7.6893 -1.5727 43 1 8.2996 9.1125 -0.0816 44 1 7.1482 9.9845 0.9587 45 1 12.1187 11.2916 3.8405 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001736022911.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:43:27 Heat of formation + Delta-G solvation = -53.462180 kcal Electronic energy + Delta-G solvation = -25260.050229 eV Core-core repulsion = 21530.841699 eV Total energy + Delta-G solvation = -3729.208530 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 346.117 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.80349 -40.57950 -39.05016 -36.54354 -34.57055 -34.05573 -31.99500 -30.80914 -29.80633 -29.29588 -27.68093 -27.34384 -25.66528 -24.33633 -22.65520 -20.69955 -19.92582 -19.51746 -18.43081 -18.02445 -17.43655 -17.26795 -16.97255 -16.86649 -16.68650 -16.52867 -15.97446 -15.66706 -14.89098 -14.85599 -14.60146 -14.50724 -14.25188 -14.17599 -14.07288 -14.04212 -13.67855 -13.51641 -13.33684 -13.22171 -13.12639 -12.90382 -12.86718 -12.81355 -12.58372 -12.49523 -12.45722 -11.71779 -11.64943 -11.13083 -11.04814 -10.94573 -10.78323 -10.24584 -9.95651 -9.61039 -8.74054 -8.64410 -8.33366 -6.10757 0.57867 1.25470 1.43047 1.44923 1.50177 1.54603 1.57387 1.58572 1.74823 2.21485 2.29305 3.00929 3.26553 3.33103 3.54251 3.67464 3.69856 3.82049 3.89661 3.97336 4.07822 4.20542 4.30127 4.30811 4.33097 4.38273 4.42484 4.48847 4.50919 4.54772 4.60959 4.64203 4.70744 4.81583 4.87090 4.88482 4.91150 4.99392 5.25939 5.43328 5.48373 6.20874 6.25412 6.66027 7.00526 7.08254 7.14413 8.75640 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.035614 B = 0.001732 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.028063 B =16158.706725 C =16493.778564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.291 6.291 3 C -0.061 4.061 4 C -0.108 4.108 5 C 0.542 3.458 6 O -0.579 6.579 7 N -0.643 5.643 8 C 0.111 3.889 9 C -0.146 4.146 10 C 0.117 3.883 11 H 0.111 0.889 12 C 0.120 3.880 13 N -0.609 5.609 14 C 0.072 3.928 15 C 0.533 3.467 16 O -0.551 6.551 17 C -0.125 4.125 18 S -0.145 6.145 19 C -0.547 4.547 20 H 0.082 0.918 21 C 0.015 3.985 22 N -0.910 5.910 23 Si 0.996 3.004 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.258 1.258 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.115 0.885 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.121 0.879 33 H 0.114 0.886 34 H 0.100 0.900 35 H 0.116 0.884 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.111 0.889 44 H 0.102 0.898 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.609 -20.033 -13.619 29.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.066 6.066 3 C -0.210 4.210 4 C -0.149 4.149 5 C 0.332 3.668 6 O -0.460 6.460 7 N -0.378 5.378 8 C -0.010 4.010 9 C -0.184 4.184 10 C 0.012 3.988 11 H 0.129 0.871 12 C -0.003 4.003 13 N -0.344 5.344 14 C -0.070 4.070 15 C 0.320 3.680 16 O -0.428 6.428 17 C -0.276 4.276 18 S 0.082 5.918 19 C -0.695 4.695 20 H 0.100 0.900 21 C -0.190 4.190 22 N -0.547 5.547 23 Si 0.818 3.182 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.181 1.181 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.134 0.866 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.139 0.861 33 H 0.132 0.868 34 H 0.119 0.881 35 H 0.134 0.866 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.110 0.890 43 H 0.129 0.871 44 H 0.120 0.880 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.083 -21.598 -12.119 30.086 hybrid contribution -0.735 2.907 -0.910 3.133 sum -17.817 -18.691 -13.029 28.924 Atomic orbital electron populations 1.23455 0.91275 1.07648 1.05793 1.86827 1.10746 1.10799 1.98195 1.22996 0.98405 0.93803 1.05766 1.21270 0.95085 0.91433 1.07086 1.20564 0.79905 0.91614 0.74706 1.90689 1.46872 1.56058 1.52358 1.49841 1.04816 1.11073 1.72115 1.23149 0.78476 0.96721 1.02694 1.23332 0.98296 0.96445 1.00335 1.23202 0.89985 0.85198 1.00379 0.87129 1.21520 0.95818 0.82813 1.00186 1.47763 1.33567 1.22758 1.30320 1.22082 1.01962 0.95295 0.87674 1.20115 0.79777 0.86357 0.81701 1.90670 1.65875 1.55545 1.30706 1.23387 1.01351 0.98142 1.04722 1.85521 1.37940 1.29673 1.38677 1.23206 1.21309 1.07720 1.17236 0.90004 1.26083 0.96044 1.02300 0.94537 1.70174 1.25130 1.40493 1.18876 0.84985 0.77257 0.76820 0.79120 1.19521 1.20290 1.18146 0.89873 0.89639 0.86620 0.90253 0.89777 0.86134 0.86790 0.88139 0.86648 0.89172 0.90395 0.89328 0.92162 0.91569 0.89713 0.88975 0.87124 0.87960 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 10.76 113.37 1.22 0.20 16 2 S -0.29 -4.12 22.38 -56.49 -1.26 -5.38 16 3 C -0.06 -0.92 5.23 71.98 0.38 -0.54 16 4 C -0.11 -1.47 5.54 29.85 0.17 -1.30 16 5 C 0.54 11.05 8.00 87.66 0.70 11.75 16 6 O -0.58 -16.09 15.32 -3.03 -0.05 -16.13 16 7 N -0.64 -11.87 3.57 -834.27 -2.98 -14.85 16 8 C 0.11 1.40 8.41 83.09 0.70 2.10 16 9 C -0.15 -3.01 7.32 30.84 0.23 -2.78 16 10 C 0.12 2.44 4.30 41.79 0.18 2.62 16 11 H 0.11 1.98 8.14 -2.38 -0.02 1.96 16 12 C 0.12 3.18 5.16 86.38 0.45 3.62 16 13 N -0.61 -16.62 2.87 -846.76 -2.43 -19.05 16 14 C 0.07 1.36 10.29 127.77 1.31 2.68 16 15 C 0.53 19.52 7.69 87.66 0.67 20.19 16 16 O -0.55 -24.36 14.65 -3.02 -0.04 -24.40 16 17 C -0.12 -4.89 4.67 71.24 0.33 -4.56 16 18 S -0.15 -7.92 20.57 -56.49 -1.16 -9.09 16 19 C -0.55 -30.82 9.50 67.95 0.65 -30.18 16 20 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 21 C 0.02 0.86 5.49 84.86 0.47 1.32 16 22 N -0.91 -55.32 13.22 21.65 0.29 -55.03 16 23 Si 1.00 43.11 29.55 68.60 2.03 45.13 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 25 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 26 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 27 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.08 1.36 8.10 -2.39 -0.02 1.34 16 31 H 0.08 1.35 8.10 -2.39 -0.02 1.33 16 32 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.08 2.06 7.82 -2.39 -0.02 2.04 16 38 H 0.09 2.36 6.91 -2.39 -0.02 2.34 16 39 H 0.06 1.93 7.16 -2.38 -0.02 1.92 16 40 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.08 1.53 6.33 -2.38 -0.02 1.51 16 42 H 0.09 1.31 8.09 -2.38 -0.02 1.29 16 43 H 0.11 3.84 7.41 -2.39 -0.02 3.83 16 44 H 0.10 3.72 8.11 -2.40 -0.02 3.70 16 45 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -78.41 401.38 2.80 -75.61 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.97 Total: 18.07 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: 7.45 Total: 5.12 kcal Atomic # 7 Polarization: -83.80 SS G_CDS: -5.12 Total: -88.93 kcal Atomic # 8 Polarization: -40.44 SS G_CDS: -0.09 Total: -40.54 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: -12.04 SS G_CDS: -2.43 Total: -14.47 kcal Total: -78.41 2.80 -75.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001736022911.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.148 kcal (2) G-P(sol) polarization free energy of solvation -78.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds