Wall clock time and date at job start Sat Apr 11 2020 07:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81401 * 102.99662 * 2 1 4 4 C 1.53001 * 109.47005 * 179.97438 * 3 2 1 5 5 C 1.50695 * 109.47099 * 179.97438 * 4 3 2 6 6 O 1.21276 * 120.00558 * 0.02562 * 5 4 3 7 7 N 1.34782 * 119.99764 * 180.02562 * 5 4 3 8 8 C 1.47923 * 134.50436 * 355.00007 * 7 5 4 9 9 C 1.53949 * 85.99985 * 155.35541 * 8 7 5 10 10 C 1.47587 * 134.49005 * 174.99693 * 7 5 4 11 11 H 1.08995 * 113.86834 * 90.32304 * 10 7 5 12 12 C 1.52996 * 113.76884 * 318.93829 * 10 7 5 13 13 N 1.46499 * 109.47343 * 197.75488 * 12 10 7 14 14 C 1.46501 * 119.99919 * 95.26774 * 13 12 10 15 15 C 1.34777 * 120.00108 * 275.27046 * 13 12 10 16 16 O 1.21276 * 120.00008 * 5.00258 * 15 13 12 17 17 C 1.50706 * 119.99979 * 184.99541 * 15 13 12 18 18 S 1.81006 * 109.46807 * 180.02562 * 17 15 13 19 19 C 1.76195 * 99.99583 * 180.02562 * 18 17 15 20 20 H 1.08002 * 120.00444 * 0.02562 * 19 18 17 21 21 C 1.38799 * 119.99879 * 179.97438 * 19 18 17 22 22 N 1.31628 * 119.99876 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99997 * 180.02562 * 21 19 18 24 24 H 1.48490 * 109.47376 * 60.00299 * 23 21 19 25 25 H 1.48505 * 109.47058 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.46989 * 300.00193 * 23 21 19 27 27 H 1.08995 * 109.46820 * 60.00341 * 1 2 3 28 28 H 1.09004 * 109.46850 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47319 * 300.00442 * 1 2 3 30 30 H 1.09002 * 109.47438 * 60.00134 * 3 2 1 31 31 H 1.09000 * 109.47248 * 299.99725 * 3 2 1 32 32 H 1.09008 * 109.46821 * 59.99796 * 4 3 2 33 33 H 1.09000 * 109.47311 * 300.00198 * 4 3 2 34 34 H 1.09003 * 113.87040 * 41.09272 * 8 7 5 35 35 H 1.09001 * 113.76968 * 269.60085 * 8 7 5 36 36 H 1.08993 * 113.73978 * 269.20887 * 9 8 7 37 37 H 1.08998 * 113.73878 * 138.00043 * 9 8 7 38 38 H 1.08999 * 109.47420 * 317.75793 * 12 10 7 39 39 H 1.09003 * 109.47281 * 77.75742 * 12 10 7 40 40 H 1.08996 * 109.47530 * 90.00191 * 14 13 12 41 41 H 1.09008 * 109.47099 * 210.00327 * 14 13 12 42 42 H 1.08999 * 109.46955 * 329.99865 * 14 13 12 43 43 H 1.08992 * 109.47120 * 300.00357 * 17 15 13 44 44 H 1.08995 * 109.46788 * 60.00586 * 17 15 13 45 45 H 0.97008 * 119.99766 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 6 4.0812 3.4084 0.0000 6 8 3.1943 4.2355 -0.0004 7 7 5.3701 3.8024 -0.0001 8 6 6.6690 3.1006 0.0922 9 6 7.2581 4.3210 -0.6382 10 6 6.0526 5.1078 -0.0925 11 1 6.2360 5.5789 0.8732 12 6 5.4255 6.0607 -1.1120 13 7 6.3807 7.1217 -1.4408 14 6 7.2402 6.9938 -2.6202 15 6 6.4687 8.2154 -0.6582 16 8 5.8238 8.2812 0.3668 17 6 7.3687 9.3567 -1.0567 18 16 7.2698 10.6662 0.1890 19 6 8.3851 11.8377 -0.5097 20 1 8.8829 11.6195 -1.4430 21 6 8.6232 13.0416 0.1389 22 7 8.0162 13.3078 1.2761 23 14 9.8051 14.2839 -0.6022 24 1 9.3186 14.6901 -1.9450 25 1 9.8847 15.4775 0.2779 26 1 11.1522 13.6716 -0.7281 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8031 2.2372 0.8900 31 1 1.8031 2.2371 -0.8900 32 1 4.1616 1.4703 -0.8892 33 1 4.1609 1.4705 0.8908 34 1 6.7140 2.1781 -0.4867 35 1 7.0326 2.9818 1.1129 36 1 7.2628 4.2226 -1.7237 37 1 8.2160 4.6521 -0.2372 38 1 5.1703 5.5085 -2.0165 39 1 4.5231 6.5025 -0.6894 40 1 6.7384 7.4287 -3.4845 41 1 8.1796 7.5179 -2.4437 42 1 7.4424 5.9397 -2.8098 43 1 8.3964 9.0009 -1.1285 44 1 7.0516 9.7491 -2.0228 45 1 8.1829 14.1490 1.7295 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001736022913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:43:31 Heat of formation + Delta-G solvation = -34.604754 kcal Electronic energy + Delta-G solvation = -25229.553270 eV Core-core repulsion = 21501.162459 eV Total energy + Delta-G solvation = -3728.390810 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 346.117 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.80217 -39.30786 -38.05631 -35.24996 -33.32246 -32.43033 -30.77024 -29.87774 -29.35385 -28.23076 -26.38634 -25.49480 -24.95629 -23.52008 -21.83238 -19.43449 -18.93413 -17.74722 -17.50417 -16.71534 -16.48534 -16.33500 -16.22275 -15.83560 -15.42560 -14.88730 -14.80486 -14.22955 -14.18930 -13.99084 -13.60899 -13.53141 -13.51484 -13.21773 -12.97377 -12.86767 -12.65889 -12.55122 -12.39812 -12.22103 -12.06960 -11.88302 -11.85272 -11.62213 -11.04738 -11.04520 -10.94933 -10.76494 -10.46953 -9.96915 -9.82141 -9.38177 -9.09840 -9.06007 -8.51106 -8.23053 -8.14340 -6.50401 -6.21486 -3.92379 1.15921 2.10987 2.32850 2.42309 2.99831 3.05861 3.23071 3.26590 3.29430 3.62050 4.05610 4.15536 4.20226 4.29044 4.46399 4.61603 4.70662 4.71422 4.71837 4.83881 4.97681 5.02044 5.04437 5.09566 5.12098 5.13473 5.24144 5.26867 5.32013 5.38531 5.44309 5.49269 5.54030 5.63444 5.65736 5.87402 5.92649 5.98241 6.12749 6.58653 7.40849 7.50026 7.58995 7.88015 8.34680 8.53809 9.23500 10.85815 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.028557 B = 0.001764 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.245588 B =15872.401105 C =16310.619767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.270 6.270 3 C -0.069 4.069 4 C -0.117 4.117 5 C 0.537 3.463 6 O -0.533 6.533 7 N -0.642 5.642 8 C 0.102 3.898 9 C -0.149 4.149 10 C 0.124 3.876 11 H 0.103 0.897 12 C 0.124 3.876 13 N -0.622 5.622 14 C 0.080 3.920 15 C 0.532 3.468 16 O -0.510 6.510 17 C -0.149 4.149 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.078 0.922 28 H 0.102 0.898 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.055 0.945 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.068 -28.551 -7.221 29.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 S -0.044 6.044 3 C -0.217 4.217 4 C -0.158 4.158 5 C 0.325 3.675 6 O -0.409 6.409 7 N -0.379 5.379 8 C -0.021 4.021 9 C -0.186 4.186 10 C 0.020 3.980 11 H 0.120 0.880 12 C 0.000 4.000 13 N -0.358 5.358 14 C -0.063 4.063 15 C 0.319 3.681 16 O -0.384 6.384 17 C -0.300 4.300 18 S 0.165 5.835 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 H 0.097 0.903 28 H 0.120 0.880 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.108 0.892 40 H 0.073 0.927 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.111 -28.820 -5.549 29.979 hybrid contribution 0.705 1.642 -1.646 2.430 sum -5.406 -27.178 -7.196 28.630 Atomic orbital electron populations 1.23373 0.93422 1.06558 1.05291 1.86736 1.08273 1.11222 1.98176 1.23113 0.98166 0.93688 1.06744 1.21276 0.95266 0.93779 1.05513 1.20181 0.80873 0.90649 0.75839 1.90761 1.45800 1.54750 1.49607 1.50301 1.04174 1.10192 1.73256 1.23272 0.80436 0.97243 1.01112 1.23606 0.98487 0.95255 1.01292 1.23290 0.88791 0.85576 1.00313 0.87966 1.21338 0.92781 0.88336 0.97589 1.47785 1.40410 1.19452 1.28184 1.21831 0.94852 1.02134 0.87515 1.20406 0.82335 0.82311 0.83014 1.90718 1.44302 1.79644 1.23714 1.23559 1.00866 0.99124 1.06446 1.85430 1.59917 1.10922 1.27201 1.22818 1.30185 1.04289 1.11155 0.90989 1.24988 0.96310 0.97444 0.94792 1.70011 1.40779 1.24319 1.15130 0.86230 0.80577 0.79772 0.78948 1.19946 1.20814 1.19943 0.90287 0.87972 0.90257 0.89093 0.89099 0.88064 0.88107 0.89733 0.89279 0.88870 0.89256 0.90491 0.89163 0.92682 0.90506 0.91394 0.89223 0.89220 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.65 10.76 101.05 1.09 0.43 16 2 S -0.27 -2.11 22.38 -107.50 -2.41 -4.51 16 3 C -0.07 -0.57 5.23 37.16 0.19 -0.38 16 4 C -0.12 -0.90 5.47 -27.88 -0.15 -1.05 16 5 C 0.54 6.02 7.93 -10.99 -0.09 5.93 16 6 O -0.53 -8.24 16.26 5.56 0.09 -8.15 16 7 N -0.64 -6.34 3.50 -170.87 -0.60 -6.94 16 8 C 0.10 0.61 8.64 -2.78 -0.02 0.59 16 9 C -0.15 -1.05 7.22 -25.80 -0.19 -1.24 16 10 C 0.12 1.41 4.48 -66.85 -0.30 1.11 16 11 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 12 C 0.12 1.62 4.81 -4.04 -0.02 1.60 16 13 N -0.62 -8.54 2.78 -181.57 -0.51 -9.05 16 14 C 0.08 0.76 9.97 59.85 0.60 1.36 16 15 C 0.53 10.00 7.64 -10.98 -0.08 9.92 16 16 O -0.51 -11.74 15.58 5.56 0.09 -11.65 16 17 C -0.15 -2.99 4.83 36.01 0.17 -2.82 16 18 S -0.06 -1.66 20.57 -107.50 -2.21 -3.88 16 19 C -0.54 -15.18 9.50 30.94 0.29 -14.89 16 20 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.14 13.22 55.49 0.73 -25.40 16 23 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.10 0.44 8.14 -51.92 -0.42 0.02 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.84 8.10 -51.92 -0.42 0.42 16 31 H 0.09 0.81 8.10 -51.92 -0.42 0.38 16 32 H 0.10 0.62 8.14 -51.92 -0.42 0.20 16 33 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.55 6.90 -51.93 -0.36 0.19 16 37 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.86 8.03 -51.93 -0.42 0.45 16 39 H 0.09 1.52 7.65 -51.93 -0.40 1.12 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.73 6.48 -51.92 -0.34 0.39 16 42 H 0.07 0.46 6.51 -51.93 -0.34 0.12 16 43 H 0.09 1.62 7.25 -51.92 -0.38 1.24 16 44 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 45 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 401.82 15.07 6.06 6.06 Total: -1.00 -36.77 401.82 -9.64 -46.41 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -7.26 Total: -1.71 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: 1.40 Total: 2.58 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: -0.37 Total: -41.39 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: 0.18 Total: -19.80 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -3.77 SS G_CDS: -4.62 Total: -8.39 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.77 -9.64 -46.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001736022913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.806 kcal (2) G-P(sol) polarization free energy of solvation -36.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds