Wall clock time and date at job start Sat Apr 11 2020 07:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81398 * 103.00097 * 2 1 4 4 H 1.09004 * 109.47089 * 54.99978 * 3 2 1 5 5 C 1.53008 * 109.47147 * 295.00495 * 3 2 1 6 6 C 1.50702 * 109.47211 * 175.00239 * 3 2 1 7 7 O 1.21279 * 120.00133 * 25.76361 * 6 3 2 8 8 N 1.34783 * 119.99743 * 205.76083 * 6 3 2 9 9 C 1.46921 * 120.62631 * 174.90435 * 8 6 3 10 10 C 1.53190 * 108.89320 * 126.46097 * 9 8 6 11 11 C 1.53036 * 109.31502 * 54.56120 * 10 9 8 12 12 C 1.53039 * 109.53968 * 298.63601 * 11 10 9 13 13 H 1.09007 * 109.49623 * 301.38361 * 12 11 10 14 14 N 1.46491 * 109.50010 * 181.31460 * 12 11 10 15 15 C 1.34780 * 119.99962 * 85.00399 * 14 12 11 16 16 O 1.21278 * 120.00182 * 359.97438 * 15 14 12 17 17 C 1.50704 * 119.99924 * 180.02562 * 15 14 12 18 18 S 1.80997 * 109.46802 * 179.97438 * 17 15 14 19 19 C 1.76206 * 99.99743 * 179.97438 * 18 17 15 20 20 H 1.07997 * 119.99985 * 0.02562 * 19 18 17 21 21 C 1.38804 * 119.99991 * 180.02562 * 19 18 17 22 22 N 1.31626 * 120.00078 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99842 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.47092 * 90.00083 * 23 21 19 25 25 H 1.48504 * 109.47062 * 210.00181 * 23 21 19 26 26 H 1.48505 * 109.47431 * 329.99945 * 23 21 19 27 27 C 1.46963 * 120.65513 * 354.71525 * 8 6 3 28 28 H 1.09000 * 109.46461 * 299.99885 * 1 2 3 29 29 H 1.08999 * 109.46826 * 59.99864 * 1 2 3 30 30 H 1.09002 * 109.47013 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46703 * 299.99718 * 5 3 2 32 32 H 1.08993 * 109.47245 * 59.99520 * 5 3 2 33 33 H 1.09002 * 109.46871 * 179.97438 * 5 3 2 34 34 H 1.09001 * 109.58941 * 6.59858 * 9 8 6 35 35 H 1.09006 * 109.58129 * 246.31898 * 9 8 6 36 36 H 1.09009 * 109.49581 * 174.51110 * 10 9 8 37 37 H 1.09001 * 109.49772 * 294.60660 * 10 9 8 38 38 H 1.09008 * 109.46196 * 58.65075 * 11 10 9 39 39 H 1.09001 * 109.46558 * 178.62245 * 11 10 9 40 40 H 0.97006 * 120.00226 * 264.99346 * 14 12 11 41 41 H 1.08996 * 109.47112 * 299.99171 * 17 15 14 42 42 H 1.09000 * 109.46874 * 59.99338 * 17 15 14 43 43 H 0.96997 * 120.00076 * 179.97438 * 22 21 19 44 44 H 1.08996 * 109.46107 * 113.75059 * 27 8 6 45 45 H 1.09002 * 109.71140 * 353.46700 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 0.8418 5 6 1.7427 2.4016 -1.3074 6 6 3.7143 1.9385 0.1238 7 8 4.4589 1.0588 -0.2537 8 7 4.2212 3.0693 0.6540 9 6 5.6659 3.2058 0.8840 10 6 6.1571 4.4885 0.2056 11 6 5.3268 5.6740 0.7027 12 6 3.8578 5.4623 0.3294 13 1 3.7684 5.3593 -0.7521 14 7 3.0687 6.6122 0.7780 15 6 2.9738 7.7089 0.0003 16 8 3.5419 7.7440 -1.0706 17 6 2.1625 8.8921 0.4620 18 16 2.2299 10.1959 -0.7916 19 6 1.2271 11.4190 -0.0151 20 1 0.7909 11.2244 0.9535 21 6 0.9977 12.6327 -0.6483 22 7 0.2481 13.5462 -0.0685 23 14 1.7528 12.9696 -2.3234 24 1 0.8183 12.5213 -3.3868 25 1 2.0059 14.4258 -2.4684 26 1 3.0345 12.2298 -2.4465 27 6 3.3405 4.1908 1.0093 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 2.2353 1.9150 -2.1492 32 1 0.6635 2.2779 -1.3969 33 1 1.9876 3.4638 -1.3071 34 1 6.1862 2.3464 0.4611 35 1 5.8617 3.2608 1.9549 36 1 7.2067 4.6509 0.4512 37 1 6.0462 4.3940 -0.8747 38 1 5.4184 5.7527 1.7860 39 1 5.6903 6.5915 0.2399 40 1 2.6145 6.5843 1.6346 41 1 1.1274 8.5861 0.6131 42 1 2.5707 9.2687 1.3999 43 1 0.0882 14.3945 -0.5108 44 1 3.3444 4.3271 2.0907 45 1 2.3254 3.9826 0.6709 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001737080759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:43:40 Heat of formation + Delta-G solvation = -74.188835 kcal Electronic energy + Delta-G solvation = -25883.918779 eV Core-core repulsion = 22153.811474 eV Total energy + Delta-G solvation = -3730.107305 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 346.117 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.88146 -39.49934 -37.61258 -34.56914 -34.26363 -32.49514 -32.39665 -30.82253 -29.22836 -28.56721 -26.39579 -25.67162 -24.64734 -23.23640 -21.56953 -20.61459 -19.43001 -18.06517 -17.91206 -17.15579 -16.51539 -16.40638 -15.82214 -15.44460 -15.26646 -15.01588 -14.80710 -14.72423 -14.42701 -14.10023 -14.02169 -13.85656 -13.76746 -13.45118 -13.30137 -12.91623 -12.84071 -12.69371 -12.40913 -12.31044 -12.14897 -11.84498 -11.54958 -11.32707 -11.23420 -11.17639 -11.05600 -10.67548 -10.30649 -10.18854 -9.91492 -9.65533 -9.30602 -9.06033 -9.00427 -8.57114 -8.06817 -6.98568 -6.34278 -4.06704 1.00967 2.03153 2.16620 2.42730 2.72755 2.83441 3.22374 3.29013 3.45728 3.55590 3.90826 4.23633 4.27792 4.29985 4.31430 4.47638 4.61995 4.63383 4.69423 4.71105 4.73760 4.79278 4.94637 5.04403 5.04856 5.08888 5.14810 5.20645 5.31829 5.32864 5.43807 5.49144 5.61561 5.66864 5.67630 5.90087 5.91458 5.97325 6.00356 6.37547 6.82091 7.43879 7.65841 7.88673 8.34699 8.36104 9.11792 10.74899 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.016352 B = 0.002265 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.934111 B =12357.446624 C =13377.282530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.191 6.191 3 C -0.095 4.095 4 H 0.108 0.892 5 C -0.146 4.146 6 C 0.541 3.459 7 O -0.516 6.516 8 N -0.604 5.604 9 C 0.110 3.890 10 C -0.131 4.131 11 C -0.132 4.132 12 C 0.135 3.865 13 H 0.094 0.906 14 N -0.733 5.733 15 C 0.534 3.466 16 O -0.515 6.515 17 C -0.124 4.124 18 S -0.141 6.141 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.879 5.879 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.098 3.902 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.400 0.600 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.271 0.729 44 H 0.079 0.921 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.128 -25.123 5.213 25.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.034 5.966 3 C -0.227 4.227 4 H 0.126 0.874 5 C -0.205 4.205 6 C 0.327 3.673 7 O -0.391 6.391 8 N -0.339 5.339 9 C -0.011 4.011 10 C -0.170 4.170 11 C -0.171 4.171 12 C 0.028 3.972 13 H 0.112 0.888 14 N -0.388 5.388 15 C 0.320 3.680 16 O -0.388 6.388 17 C -0.275 4.275 18 S 0.085 5.915 19 C -0.670 4.670 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.026 4.026 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.123 0.877 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.114 0.886 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.234 0.766 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.081 0.919 44 H 0.097 0.903 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.069 -26.244 3.212 27.128 hybrid contribution -1.737 1.630 1.158 2.648 sum 4.332 -24.615 4.370 25.372 Atomic orbital electron populations 1.23562 0.95167 1.06804 1.05166 1.87379 1.05460 1.05866 1.97871 1.23389 0.97058 0.98529 1.03709 0.87361 1.22062 1.02271 1.01406 0.94791 1.19641 0.88934 0.81788 0.76916 1.90743 1.60171 1.41015 1.47140 1.47877 1.08204 1.14612 1.63179 1.21721 0.79408 0.99464 1.00554 1.21892 1.00063 0.93709 1.01360 1.21958 0.94280 0.99286 1.01581 1.21163 0.91048 0.84294 1.00657 0.88833 1.45926 1.53845 1.15714 1.23280 1.20308 0.80549 0.83039 0.84136 1.90714 1.45377 1.80874 1.21856 1.23281 1.02383 0.96954 1.04890 1.84821 1.68310 1.11607 1.26728 1.22302 1.34899 1.01238 1.08549 0.89368 1.24717 0.93907 0.94741 0.97946 1.69931 1.36401 1.06609 1.38645 0.86740 0.82227 0.78865 0.84042 1.19198 1.19905 1.15931 1.22022 0.94381 0.85756 1.00486 0.90405 0.90146 0.87684 0.90302 0.90918 0.90862 0.88585 0.91017 0.90006 0.91043 0.91381 0.90361 0.76585 0.88449 0.88374 0.91890 0.90268 0.88988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.76 10.45 101.05 1.06 0.30 16 2 S -0.19 -1.77 21.11 -107.50 -2.27 -4.04 16 3 C -0.10 -0.77 2.32 -27.88 -0.06 -0.84 16 4 H 0.11 0.65 6.72 -51.92 -0.35 0.30 16 5 C -0.15 -1.08 8.85 37.16 0.33 -0.75 16 6 C 0.54 5.63 6.80 -10.98 -0.07 5.56 16 7 O -0.52 -7.24 15.57 5.56 0.09 -7.15 16 8 N -0.60 -5.08 2.98 -172.74 -0.51 -5.60 16 9 C 0.11 0.87 6.43 -3.71 -0.02 0.85 16 10 C -0.13 -1.05 6.08 -26.61 -0.16 -1.21 16 11 C -0.13 -1.19 5.46 -26.69 -0.15 -1.34 16 12 C 0.13 1.25 2.61 -67.82 -0.18 1.07 16 13 H 0.09 1.10 7.58 -51.92 -0.39 0.71 16 14 N -0.73 -7.51 5.08 -53.69 -0.27 -7.78 16 15 C 0.53 8.37 7.81 -10.98 -0.09 8.29 16 16 O -0.51 -10.14 15.53 5.56 0.09 -10.05 16 17 C -0.12 -2.20 6.16 36.01 0.22 -1.98 16 18 S -0.14 -3.42 18.55 -107.50 -1.99 -5.41 16 19 C -0.52 -14.58 10.04 30.94 0.31 -14.27 16 20 H 0.09 2.56 8.03 -52.49 -0.42 2.14 16 21 C 0.10 2.74 5.50 -17.43 -0.10 2.64 16 22 N -0.88 -26.01 13.97 55.49 0.78 -25.23 16 23 Si 0.86 21.30 27.74 -169.99 -4.71 16.59 16 24 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.24 -5.83 6.74 56.52 0.38 -5.45 16 27 C 0.10 0.65 5.43 -3.69 -0.02 0.63 16 28 H 0.08 0.35 8.14 -51.92 -0.42 -0.08 16 29 H 0.08 0.39 7.14 -51.92 -0.37 0.01 16 30 H 0.10 0.48 8.14 -51.92 -0.42 0.06 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.43 6.92 -51.93 -0.36 0.07 16 33 H 0.07 0.54 7.14 -51.93 -0.37 0.17 16 34 H 0.10 0.88 7.00 -51.93 -0.36 0.51 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.55 8.14 -51.92 -0.42 0.12 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.40 2.85 8.60 -40.82 -0.35 2.50 16 41 H 0.10 1.58 8.14 -51.92 -0.42 1.16 16 42 H 0.10 1.61 8.14 -51.92 -0.42 1.19 16 43 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.09 0.52 4.85 -51.93 -0.25 0.27 16 LS Contribution 387.28 15.07 5.84 5.84 Total: -1.00 -35.39 387.28 -8.95 -44.34 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -7.04 Total: -0.44 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 1.07 Total: -1.05 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: -0.01 Total: -38.61 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: 0.17 Total: -17.21 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.71 Total: 16.59 kcal Atomic # 16 Polarization: -5.19 SS G_CDS: -4.26 Total: -9.45 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.39 -8.95 -44.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737080759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.853 kcal (2) G-P(sol) polarization free energy of solvation -35.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds