Wall clock time and date at job start Sat Apr 11 2020 07:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81398 * 103.00097 * 2 1 4 4 H 1.09004 * 109.47089 * 54.99978 * 3 2 1 5 5 C 1.53008 * 109.47147 * 295.00495 * 3 2 1 6 6 C 1.50702 * 109.47211 * 175.00239 * 3 2 1 7 7 O 1.21279 * 120.00133 * 25.76361 * 6 3 2 8 8 N 1.34783 * 119.99743 * 205.76083 * 6 3 2 9 9 C 1.46921 * 120.62631 * 174.90435 * 8 6 3 10 10 C 1.53190 * 108.89320 * 126.46097 * 9 8 6 11 11 C 1.53036 * 109.31502 * 54.56120 * 10 9 8 12 12 C 1.53039 * 109.53968 * 298.63601 * 11 10 9 13 13 H 1.09007 * 109.49623 * 301.38361 * 12 11 10 14 14 N 1.46491 * 109.50010 * 181.31460 * 12 11 10 15 15 C 1.34780 * 119.99962 * 85.00399 * 14 12 11 16 16 O 1.21278 * 120.00182 * 359.97438 * 15 14 12 17 17 C 1.50704 * 119.99924 * 180.02562 * 15 14 12 18 18 S 1.80997 * 109.46802 * 179.97438 * 17 15 14 19 19 C 1.76206 * 99.99743 * 179.97438 * 18 17 15 20 20 H 1.07997 * 119.99985 * 0.02562 * 19 18 17 21 21 C 1.38804 * 119.99991 * 180.02562 * 19 18 17 22 22 N 1.31626 * 120.00078 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99842 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.47092 * 90.00083 * 23 21 19 25 25 H 1.48504 * 109.47062 * 210.00181 * 23 21 19 26 26 H 1.48505 * 109.47431 * 329.99945 * 23 21 19 27 27 C 1.46963 * 120.65513 * 354.71525 * 8 6 3 28 28 H 1.09000 * 109.46461 * 299.99885 * 1 2 3 29 29 H 1.08999 * 109.46826 * 59.99864 * 1 2 3 30 30 H 1.09002 * 109.47013 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46703 * 299.99718 * 5 3 2 32 32 H 1.08993 * 109.47245 * 59.99520 * 5 3 2 33 33 H 1.09002 * 109.46871 * 179.97438 * 5 3 2 34 34 H 1.09001 * 109.58941 * 6.59858 * 9 8 6 35 35 H 1.09006 * 109.58129 * 246.31898 * 9 8 6 36 36 H 1.09009 * 109.49581 * 174.51110 * 10 9 8 37 37 H 1.09001 * 109.49772 * 294.60660 * 10 9 8 38 38 H 1.09008 * 109.46196 * 58.65075 * 11 10 9 39 39 H 1.09001 * 109.46558 * 178.62245 * 11 10 9 40 40 H 0.97006 * 120.00226 * 264.99346 * 14 12 11 41 41 H 1.08996 * 109.47112 * 299.99171 * 17 15 14 42 42 H 1.09000 * 109.46874 * 59.99338 * 17 15 14 43 43 H 0.96997 * 120.00076 * 179.97438 * 22 21 19 44 44 H 1.08996 * 109.46107 * 113.75059 * 27 8 6 45 45 H 1.09002 * 109.71140 * 353.46700 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 0.8418 5 6 1.7427 2.4016 -1.3074 6 6 3.7143 1.9385 0.1238 7 8 4.4589 1.0588 -0.2537 8 7 4.2212 3.0693 0.6540 9 6 5.6659 3.2058 0.8840 10 6 6.1571 4.4885 0.2056 11 6 5.3268 5.6740 0.7027 12 6 3.8578 5.4623 0.3294 13 1 3.7684 5.3593 -0.7521 14 7 3.0687 6.6122 0.7780 15 6 2.9738 7.7089 0.0003 16 8 3.5419 7.7440 -1.0706 17 6 2.1625 8.8921 0.4620 18 16 2.2299 10.1959 -0.7916 19 6 1.2271 11.4190 -0.0151 20 1 0.7909 11.2244 0.9535 21 6 0.9977 12.6327 -0.6483 22 7 0.2481 13.5462 -0.0685 23 14 1.7528 12.9696 -2.3234 24 1 0.8183 12.5213 -3.3868 25 1 2.0059 14.4258 -2.4684 26 1 3.0345 12.2298 -2.4465 27 6 3.3405 4.1908 1.0093 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 2.2353 1.9150 -2.1492 32 1 0.6635 2.2779 -1.3969 33 1 1.9876 3.4638 -1.3071 34 1 6.1862 2.3464 0.4611 35 1 5.8617 3.2608 1.9549 36 1 7.2067 4.6509 0.4512 37 1 6.0462 4.3940 -0.8747 38 1 5.4184 5.7527 1.7860 39 1 5.6903 6.5915 0.2399 40 1 2.6145 6.5843 1.6346 41 1 1.1274 8.5861 0.6131 42 1 2.5707 9.2687 1.3999 43 1 0.0882 14.3945 -0.5108 44 1 3.3444 4.3271 2.0907 45 1 2.3254 3.9826 0.6709 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001737080759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:43:40 Heat of formation + Delta-G solvation = -98.792646 kcal Electronic energy + Delta-G solvation = -25884.985680 eV Core-core repulsion = 22153.811474 eV Total energy + Delta-G solvation = -3731.174206 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 346.117 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.66638 -40.61191 -38.51868 -35.56861 -34.95705 -34.65924 -33.12609 -31.86954 -29.74968 -29.58971 -27.83203 -27.08277 -25.27987 -24.02027 -22.39197 -21.66821 -20.28072 -19.78303 -18.68673 -18.10940 -17.59997 -17.43542 -17.06584 -16.51899 -16.48215 -16.23656 -15.78745 -15.51829 -15.29142 -15.15993 -14.95641 -14.77369 -14.71602 -14.53225 -14.25700 -13.89268 -13.65450 -13.56080 -13.33266 -13.31491 -13.02033 -13.00372 -12.74737 -12.65814 -12.54509 -12.28035 -12.01372 -11.91165 -11.85060 -11.16398 -11.05498 -10.96735 -10.84149 -10.50789 -10.21973 -9.79418 -8.97667 -8.74721 -8.50730 -6.20713 0.40792 0.99368 1.31514 1.33426 1.47333 1.54289 1.57497 1.60647 1.80448 2.24322 2.29761 2.73208 2.87860 3.23854 3.58287 3.64195 3.71741 3.85166 3.88416 3.92398 4.04329 4.21135 4.27445 4.33367 4.35350 4.37298 4.45330 4.49518 4.51676 4.57252 4.67083 4.77868 4.80230 4.90771 4.94370 5.06945 5.14572 5.20855 5.33094 5.47056 5.71862 6.11700 6.13100 6.47892 6.91719 6.95070 7.21669 8.61477 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.016352 B = 0.002265 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.934111 B =12357.446624 C =13377.282530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.261 6.261 3 C -0.081 4.081 4 H 0.137 0.863 5 C -0.143 4.143 6 C 0.535 3.465 7 O -0.561 6.561 8 N -0.600 5.600 9 C 0.111 3.889 10 C -0.124 4.124 11 C -0.128 4.128 12 C 0.136 3.864 13 H 0.066 0.934 14 N -0.703 5.703 15 C 0.540 3.460 16 O -0.560 6.560 17 C -0.110 4.110 18 S -0.180 6.180 19 C -0.526 4.526 20 H 0.065 0.935 21 C 0.045 3.955 22 N -0.917 5.917 23 Si 0.912 3.088 24 H -0.263 1.263 25 H -0.262 1.262 26 H -0.237 1.237 27 C 0.102 3.898 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.113 0.887 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.049 0.951 38 H 0.091 0.909 39 H 0.048 0.952 40 H 0.421 0.579 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.276 0.724 44 H 0.113 0.887 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.567 -26.038 6.594 27.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S -0.036 6.036 3 C -0.213 4.213 4 H 0.155 0.845 5 C -0.202 4.202 6 C 0.322 3.678 7 O -0.439 6.439 8 N -0.334 5.334 9 C -0.011 4.011 10 C -0.163 4.163 11 C -0.167 4.167 12 C 0.030 3.970 13 H 0.085 0.915 14 N -0.358 5.358 15 C 0.325 3.675 16 O -0.438 6.438 17 C -0.261 4.261 18 S 0.046 5.954 19 C -0.673 4.673 20 H 0.083 0.917 21 C -0.160 4.160 22 N -0.555 5.555 23 Si 0.735 3.265 24 H -0.188 1.188 25 H -0.186 1.186 26 H -0.161 1.161 27 C -0.021 4.021 28 H 0.112 0.888 29 H 0.108 0.892 30 H 0.131 0.869 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.068 0.932 38 H 0.110 0.890 39 H 0.067 0.933 40 H 0.259 0.741 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.086 0.914 44 H 0.131 0.869 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.490 -27.167 4.652 28.104 hybrid contribution -1.563 1.798 0.832 2.524 sum 3.927 -25.369 5.485 26.251 Atomic orbital electron populations 1.23594 0.91229 1.07766 1.06359 1.87645 1.09874 1.08047 1.98048 1.23355 0.95532 0.97445 1.04954 0.84545 1.22040 1.03276 1.01023 0.93818 1.20096 0.89826 0.81682 0.76216 1.90723 1.61396 1.42701 1.49074 1.47955 1.08699 1.14478 1.62224 1.21764 0.79107 0.98432 1.01805 1.21822 1.00924 0.93503 1.00018 1.21910 0.93874 0.98187 1.02725 1.21197 0.91339 0.84877 0.99567 0.91549 1.45568 1.52824 1.14217 1.23187 1.19926 0.79978 0.83661 0.83913 1.90714 1.47347 1.81757 1.23949 1.23270 1.04373 0.95482 1.03006 1.84785 1.67479 1.13345 1.29751 1.22461 1.34785 1.02340 1.07731 0.91719 1.25544 0.94435 0.94797 1.01249 1.70009 1.37875 1.07315 1.40315 0.85894 0.81381 0.79203 0.80064 1.18792 1.18612 1.16074 1.22132 0.94460 0.83417 1.02125 0.88808 0.89233 0.86887 0.92246 0.88970 0.90700 0.90233 0.88507 0.88510 0.93205 0.89031 0.93263 0.74099 0.86462 0.86640 0.91436 0.86865 0.87425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 10.45 113.37 1.19 0.15 16 2 S -0.26 -4.62 21.11 -56.49 -1.19 -5.81 16 3 C -0.08 -1.17 2.32 29.85 0.07 -1.10 16 4 H 0.14 1.13 6.72 -2.39 -0.02 1.11 16 5 C -0.14 -1.88 8.85 71.98 0.64 -1.24 16 6 C 0.53 10.58 6.80 87.66 0.60 11.18 16 7 O -0.56 -16.02 15.57 -3.03 -0.05 -16.07 16 8 N -0.60 -8.81 2.98 -818.81 -2.44 -11.25 16 9 C 0.11 1.55 6.43 86.36 0.56 2.10 16 10 C -0.12 -1.82 6.08 30.67 0.19 -1.64 16 11 C -0.13 -2.05 5.46 30.62 0.17 -1.88 16 12 C 0.14 2.19 2.61 45.07 0.12 2.30 16 13 H 0.07 1.50 7.58 -2.38 -0.02 1.49 16 14 N -0.70 -12.11 5.08 -442.17 -2.25 -14.36 16 15 C 0.54 15.86 7.81 87.66 0.68 16.54 16 16 O -0.56 -21.75 15.53 -3.02 -0.05 -21.79 16 17 C -0.11 -3.67 6.16 71.24 0.44 -3.23 16 18 S -0.18 -8.63 18.55 -56.49 -1.05 -9.67 16 19 C -0.53 -29.41 10.04 67.96 0.68 -28.72 16 20 H 0.06 3.80 8.03 -2.91 -0.02 3.77 16 21 C 0.05 2.58 5.50 84.86 0.47 3.05 16 22 N -0.92 -54.63 13.97 21.65 0.30 -54.33 16 23 Si 0.91 44.01 27.74 68.60 1.90 45.91 16 24 H -0.26 -12.41 7.11 99.48 0.71 -11.70 16 25 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 26 H -0.24 -11.39 6.74 99.48 0.67 -10.72 16 27 C 0.10 0.97 5.43 86.36 0.47 1.44 16 28 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.09 0.61 7.14 -2.39 -0.02 0.60 16 30 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.09 0.85 6.92 -2.39 -0.02 0.83 16 33 H 0.07 0.97 7.14 -2.39 -0.02 0.95 16 34 H 0.08 1.43 7.00 -2.39 -0.02 1.41 16 35 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.42 3.99 8.60 -92.70 -0.80 3.20 16 41 H 0.12 3.47 8.14 -2.40 -0.02 3.45 16 42 H 0.12 3.48 8.14 -2.40 -0.02 3.46 16 43 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 44 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 45 H 0.11 0.74 4.85 -2.39 -0.01 0.73 16 Total: -1.00 -80.42 387.28 1.61 -78.81 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 0.17 Total: 9.62 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: 6.26 Total: -1.06 kcal Atomic # 7 Polarization: -75.56 SS G_CDS: -4.38 Total: -79.94 kcal Atomic # 8 Polarization: -37.77 SS G_CDS: -0.09 Total: -37.86 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.90 Total: 45.91 kcal Atomic # 16 Polarization: -13.24 SS G_CDS: -2.24 Total: -15.48 kcal Total: -80.42 1.61 -78.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737080759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.980 kcal (2) G-P(sol) polarization free energy of solvation -80.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds