Wall clock time and date at job start Sat Apr 11 2020 07:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81394 * 103.00144 * 2 1 4 4 H 1.09005 * 109.46999 * 304.99735 * 3 2 1 5 5 C 1.52996 * 109.47274 * 64.99769 * 3 2 1 6 6 C 1.50695 * 109.47435 * 184.99908 * 3 2 1 7 7 O 1.21283 * 119.99771 * 336.70260 * 6 3 2 8 8 N 1.34777 * 120.00092 * 156.70101 * 6 3 2 9 9 C 1.46496 * 120.00249 * 5.10361 * 8 6 3 10 10 C 1.46506 * 119.99971 * 185.10701 * 8 6 3 11 11 C 1.52995 * 109.46973 * 269.62251 * 10 8 6 12 12 H 1.08999 * 112.96741 * 65.49555 * 11 10 8 13 13 C 1.53947 * 113.77163 * 293.80656 * 11 10 8 14 14 C 1.53945 * 86.29215 * 222.09445 * 13 11 10 15 15 N 1.47577 * 86.11552 * 23.60981 * 14 13 11 16 16 C 1.34776 * 134.49370 * 155.36401 * 15 14 13 17 17 O 1.21273 * 120.00422 * 175.05560 * 16 15 14 18 18 C 1.50708 * 119.99809 * 355.05590 * 16 15 14 19 19 S 1.80997 * 109.47175 * 180.02562 * 18 16 15 20 20 C 1.76200 * 99.99984 * 179.97438 * 19 18 16 21 21 H 1.08003 * 119.99789 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00353 * 180.02562 * 20 19 18 23 23 N 1.31636 * 119.99386 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00366 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47309 * 89.99675 * 24 22 20 26 26 H 1.48500 * 109.47059 * 210.00284 * 24 22 20 27 27 H 1.48500 * 109.46852 * 329.99800 * 24 22 20 28 28 H 1.08996 * 109.47247 * 299.99851 * 1 2 3 29 29 H 1.09002 * 109.47080 * 60.00145 * 1 2 3 30 30 H 1.08996 * 109.46939 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47158 * 184.45004 * 5 3 2 32 32 H 1.09007 * 109.47074 * 304.44685 * 5 3 2 33 33 H 1.09002 * 109.47367 * 64.44540 * 5 3 2 34 34 H 1.08993 * 109.47669 * 269.99876 * 9 8 6 35 35 H 1.09008 * 109.47174 * 149.99799 * 9 8 6 36 36 H 1.09006 * 109.46858 * 30.00878 * 9 8 6 37 37 H 1.09004 * 109.47105 * 29.62247 * 10 8 6 38 38 H 1.08997 * 109.47270 * 149.62143 * 10 8 6 39 39 H 1.08998 * 113.73888 * 336.44411 * 13 11 10 40 40 H 1.09004 * 113.73804 * 107.63885 * 13 11 10 41 41 H 1.09000 * 113.76158 * 137.91197 * 14 13 11 42 42 H 1.08998 * 113.77045 * 269.19058 * 14 13 11 43 43 H 1.08996 * 109.46917 * 300.00551 * 18 16 15 44 44 H 1.09004 * 109.47219 * 59.99940 * 18 16 15 45 45 H 0.96997 * 119.99270 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 1 1.7295 2.2541 -0.8419 5 6 1.7428 2.4016 1.3073 6 6 3.7142 1.9385 -0.1238 7 8 4.4574 1.0409 0.2122 8 7 4.2227 3.0890 -0.6079 9 6 3.3335 4.2137 -0.9087 10 6 5.6648 3.2148 -0.8335 11 6 6.3330 3.7596 0.4304 12 1 6.2703 3.0728 1.2745 13 6 5.9262 5.2041 0.7740 14 6 7.4120 5.4385 1.1017 15 7 7.6863 4.3020 0.2011 16 6 8.7468 3.9147 -0.5350 17 8 8.7189 2.8582 -1.1297 18 6 9.9674 4.7947 -0.6190 19 16 11.2084 4.0059 -1.6744 20 6 12.4878 5.2149 -1.5983 21 1 12.3487 6.1123 -1.0137 22 6 13.6745 5.0141 -2.2897 23 7 13.8442 3.9201 -3.0018 24 14 15.0313 6.2955 -2.2084 25 1 15.9330 5.9901 -1.0687 26 1 15.8082 6.2748 -3.4738 27 1 14.4311 7.6404 -2.0181 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.9165 3.4771 1.2745 32 1 0.6775 2.2093 1.4352 33 1 2.2928 1.9699 2.1436 34 1 2.9936 4.1420 -1.9418 35 1 3.8723 5.1507 -0.7676 36 1 2.4729 4.1853 -0.2402 37 1 6.0820 2.2364 -1.0721 38 1 5.8445 3.8985 -1.6631 39 1 5.5704 5.7754 -0.0833 40 1 5.2669 5.2803 1.6387 41 1 7.7972 6.3908 0.7372 42 1 7.6675 5.2472 2.1439 43 1 9.6909 5.7600 -1.0429 44 1 10.3793 4.9410 0.3796 45 1 14.6737 3.7796 -3.4846 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001739771331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:43:56 Heat of formation + Delta-G solvation = -51.546077 kcal Electronic energy + Delta-G solvation = -25669.514651 eV Core-core repulsion = 21940.389210 eV Total energy + Delta-G solvation = -3729.125441 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 346.117 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.73137 -40.76147 -38.82189 -36.67113 -34.60876 -34.43843 -32.15844 -30.21434 -29.56134 -29.38127 -27.68553 -27.66675 -25.73464 -24.14078 -23.05580 -20.68026 -20.21818 -19.48078 -18.37983 -18.09970 -17.94750 -17.18872 -17.05375 -16.89627 -16.39901 -16.24638 -15.74826 -15.62664 -15.27718 -14.94365 -14.68696 -14.50041 -14.28475 -14.18878 -14.02598 -13.85153 -13.65295 -13.44833 -13.31120 -13.21059 -13.07922 -12.94327 -12.90489 -12.76362 -12.62855 -12.50304 -12.32892 -11.83171 -11.75298 -11.16310 -11.02892 -10.81290 -10.77764 -10.30923 -10.01081 -9.63244 -8.75887 -8.71296 -8.36452 -6.16100 0.43245 1.16569 1.38623 1.41673 1.44378 1.52904 1.56034 1.64094 1.74075 2.15930 2.25689 2.97543 3.19061 3.30531 3.38962 3.64974 3.77477 3.85359 3.89525 3.95065 4.05488 4.21513 4.23790 4.35812 4.37704 4.40659 4.42030 4.52180 4.57182 4.61411 4.64617 4.68956 4.77128 4.85649 4.92986 4.93632 4.97090 5.17853 5.23696 5.39063 5.39937 6.17634 6.20542 6.58829 6.98664 7.04095 7.10404 8.72986 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.027179 B = 0.001974 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.966814 B =14182.412618 C =14821.067808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 S -0.289 6.289 3 C -0.070 4.070 4 H 0.137 0.863 5 C -0.139 4.139 6 C 0.522 3.478 7 O -0.571 6.571 8 N -0.599 5.599 9 C 0.057 3.943 10 C 0.126 3.874 11 C 0.116 3.884 12 H 0.077 0.923 13 C -0.117 4.117 14 C 0.097 3.903 15 N -0.646 5.646 16 C 0.548 3.452 17 O -0.569 6.569 18 C -0.115 4.115 19 S -0.156 6.156 20 C -0.545 4.545 21 H 0.084 0.916 22 C 0.011 3.989 23 N -0.912 5.912 24 Si 1.002 2.998 25 H -0.268 1.268 26 H -0.277 1.277 27 H -0.255 1.255 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.108 0.892 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.041 0.959 38 H 0.090 0.910 39 H 0.114 0.886 40 H 0.120 0.880 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.110 0.890 44 H 0.102 0.898 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.975 8.415 10.813 36.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 S -0.064 6.064 3 C -0.202 4.202 4 H 0.155 0.845 5 C -0.198 4.198 6 C 0.310 3.690 7 O -0.449 6.449 8 N -0.332 5.332 9 C -0.084 4.084 10 C 0.001 3.999 11 C 0.011 3.989 12 H 0.095 0.905 13 C -0.154 4.154 14 C -0.024 4.024 15 N -0.384 5.384 16 C 0.337 3.663 17 O -0.448 6.448 18 C -0.266 4.266 19 S 0.071 5.929 20 C -0.693 4.693 21 H 0.102 0.898 22 C -0.193 4.193 23 N -0.549 5.549 24 Si 0.823 3.177 25 H -0.193 1.193 26 H -0.202 1.202 27 H -0.179 1.179 28 H 0.116 0.884 29 H 0.111 0.889 30 H 0.127 0.873 31 H 0.119 0.881 32 H 0.111 0.889 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.059 0.941 38 H 0.108 0.892 39 H 0.132 0.868 40 H 0.138 0.862 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.128 0.872 44 H 0.121 0.879 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -32.694 5.381 9.870 34.572 hybrid contribution 0.802 1.819 0.288 2.008 sum -31.892 7.199 10.158 34.236 Atomic orbital electron populations 1.23564 0.90524 1.07649 1.06554 1.88017 1.10575 1.09663 1.98123 1.23303 0.94313 0.96529 1.06047 0.84526 1.22085 1.03032 1.02131 0.92536 1.20463 0.90308 0.81763 0.76513 1.90781 1.61929 1.42595 1.49617 1.47696 1.06770 1.14556 1.64147 1.22462 0.94779 0.88336 1.02804 1.21256 0.80237 1.01299 0.97093 1.23271 0.79812 0.98858 0.96926 0.90531 1.23602 0.95908 0.91455 1.04473 1.23538 0.94626 0.89662 0.94538 1.50346 1.12614 1.29479 1.45919 1.19923 0.82784 0.85163 0.78421 1.90705 1.81239 1.25155 1.47651 1.23246 0.96120 1.02442 1.04827 1.85678 1.12612 1.31807 1.62832 1.23186 1.02442 1.07386 1.36263 0.89790 1.26194 1.00798 0.98624 0.93716 1.70203 1.27106 1.27503 1.30065 0.84904 0.76825 0.77926 0.78004 1.19346 1.20229 1.17906 0.88439 0.88855 0.87313 0.88098 0.88864 0.92622 0.91173 0.88262 0.87774 0.94052 0.89175 0.86798 0.86190 0.87945 0.88141 0.87225 0.87939 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.45 113.37 1.18 0.26 16 2 S -0.29 -5.76 21.08 -56.49 -1.19 -6.95 16 3 C -0.07 -0.99 2.35 29.85 0.07 -0.92 16 4 H 0.14 1.07 7.25 -2.39 -0.02 1.05 16 5 C -0.14 -1.03 8.92 71.98 0.64 -0.39 16 6 C 0.52 12.09 6.80 87.66 0.60 12.69 16 7 O -0.57 -20.40 15.73 -3.04 -0.05 -20.45 16 8 N -0.60 -10.70 2.81 -846.75 -2.38 -13.08 16 9 C 0.06 0.33 9.55 127.77 1.22 1.55 16 10 C 0.13 3.26 4.90 86.38 0.42 3.68 16 11 C 0.12 2.68 4.51 45.09 0.20 2.89 16 12 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 13 C -0.12 -1.24 6.90 31.25 0.22 -1.03 16 14 C 0.10 1.52 8.61 86.48 0.74 2.26 16 15 N -0.65 -18.35 3.49 -814.00 -2.84 -21.19 16 16 C 0.55 22.38 7.94 87.66 0.70 23.08 16 17 O -0.57 -29.28 16.11 -3.01 -0.05 -29.33 16 18 C -0.12 -4.86 5.91 71.24 0.42 -4.44 16 19 S -0.16 -9.07 20.57 -56.49 -1.16 -10.23 16 20 C -0.55 -31.79 9.50 67.95 0.65 -31.14 16 21 H 0.08 4.52 7.80 -2.91 -0.02 4.49 16 22 C 0.01 0.65 5.49 84.86 0.47 1.12 16 23 N -0.91 -57.31 13.22 21.65 0.29 -57.02 16 24 Si 1.00 44.11 29.55 68.60 2.03 46.13 16 25 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 26 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 27 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 28 H 0.10 0.42 7.03 -2.39 -0.02 0.40 16 29 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.11 0.80 8.14 -2.39 -0.02 0.79 16 31 H 0.10 0.18 6.21 -2.39 -0.01 0.16 16 32 H 0.09 0.30 6.74 -2.38 -0.02 0.28 16 33 H 0.05 0.69 8.14 -2.39 -0.02 0.68 16 34 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.10 0.24 5.95 -2.38 -0.01 0.23 16 36 H 0.10 0.02 4.86 -2.38 -0.01 0.01 16 37 H 0.04 1.55 7.45 -2.38 -0.02 1.53 16 38 H 0.09 2.21 8.07 -2.39 -0.02 2.19 16 39 H 0.11 0.81 6.72 -2.39 -0.02 0.79 16 40 H 0.12 0.54 8.14 -2.38 -0.02 0.52 16 41 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.11 4.10 8.14 -2.40 -0.02 4.08 16 44 H 0.10 3.97 8.14 -2.39 -0.02 3.95 16 45 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -95.67 393.55 3.16 -92.51 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 0.99 Total: 10.02 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: 7.53 Total: 9.60 kcal Atomic # 7 Polarization: -86.36 SS G_CDS: -4.94 Total: -91.30 kcal Atomic # 8 Polarization: -49.68 SS G_CDS: -0.10 Total: -49.78 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: -14.83 SS G_CDS: -2.35 Total: -17.19 kcal Total: -95.67 3.16 -92.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739771331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.968 kcal (2) G-P(sol) polarization free energy of solvation -95.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds