Wall clock time and date at job start Sat Apr 11 2020 07:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 C 1.81399 * 102.99831 * 2 1 4 4 H 1.08998 * 109.47175 * 304.99999 * 3 2 1 5 5 C 1.53004 * 109.47125 * 65.00003 * 3 2 1 6 6 C 1.50699 * 109.47103 * 184.99616 * 3 2 1 7 7 O 1.21281 * 119.99954 * 340.00284 * 6 3 2 8 8 N 1.34777 * 119.99912 * 159.99780 * 6 3 2 9 9 C 1.46498 * 120.00085 * 354.85408 * 8 6 3 10 10 C 1.46501 * 120.00039 * 174.84892 * 8 6 3 11 11 C 1.53003 * 109.46727 * 94.89238 * 10 8 6 12 12 H 1.08994 * 112.78365 * 316.03045 * 11 10 8 13 13 C 1.53494 * 113.46712 * 86.81894 * 11 10 8 14 14 C 1.53234 * 83.43381 * 140.67363 * 13 11 10 15 15 N 1.47061 * 88.08371 * 334.10445 * 14 13 11 16 16 C 1.34781 * 136.05771 * 207.20764 * 15 14 13 17 17 O 1.21285 * 119.99977 * 174.65398 * 16 15 14 18 18 C 1.50701 * 119.99780 * 354.64838 * 16 15 14 19 19 S 1.81004 * 109.46799 * 180.02562 * 18 16 15 20 20 C 1.76202 * 99.99755 * 180.02562 * 19 18 16 21 21 H 1.08001 * 120.00117 * 359.97438 * 20 19 18 22 22 C 1.38804 * 119.99774 * 180.02562 * 20 19 18 23 23 N 1.31625 * 120.00086 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99717 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.46983 * 90.00040 * 24 22 20 26 26 H 1.48498 * 109.46710 * 209.99949 * 24 22 20 27 27 H 1.48503 * 109.47162 * 329.99892 * 24 22 20 28 28 H 1.09001 * 109.46683 * 60.00119 * 1 2 3 29 29 H 1.08997 * 109.46645 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46627 * 300.00074 * 1 2 3 31 31 H 1.08996 * 109.47338 * 179.97438 * 5 3 2 32 32 H 1.09004 * 109.47014 * 299.99938 * 5 3 2 33 33 H 1.08998 * 109.47097 * 59.99948 * 5 3 2 34 34 H 1.08997 * 109.47123 * 269.99511 * 9 8 6 35 35 H 1.08998 * 109.47186 * 30.00178 * 9 8 6 36 36 H 1.09000 * 109.47002 * 149.99926 * 9 8 6 37 37 H 1.09001 * 109.47111 * 334.89945 * 10 8 6 38 38 H 1.08997 * 109.47291 * 214.89458 * 10 8 6 39 39 H 1.08997 * 114.20539 * 254.43292 * 13 11 10 40 40 H 1.09008 * 114.20762 * 27.06199 * 13 11 10 41 41 H 1.08996 * 113.38489 * 219.28992 * 14 13 11 42 42 H 1.08999 * 113.46550 * 88.93032 * 14 13 11 43 43 H 1.08990 * 109.46889 * 60.00580 * 18 16 15 44 44 H 1.08998 * 109.47084 * 299.99926 * 18 16 15 45 45 H 0.96998 * 120.00020 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 -0.8418 5 6 1.7428 2.4016 1.3074 6 6 3.7142 1.9386 -0.1237 7 8 4.4551 1.0200 0.1556 8 7 4.2253 3.1124 -0.5450 9 6 3.3302 4.1835 -0.9897 10 6 5.6758 3.3173 -0.5579 11 6 6.2240 2.9944 -1.9494 12 1 5.8027 2.0801 -2.3673 13 6 6.1784 4.1859 -2.9160 14 6 7.5409 3.6478 -3.3653 15 7 7.6914 3.0528 -2.0289 16 6 8.7209 2.7152 -1.2272 17 8 8.5075 2.3147 -0.1025 18 6 10.1370 2.8353 -1.7284 19 16 11.2832 2.3106 -0.4295 20 6 12.8180 2.5471 -1.2621 21 1 12.8306 2.9167 -2.2768 22 6 14.0108 2.2575 -0.6141 23 7 13.9955 1.8066 0.6224 24 14 15.6380 2.5076 -1.4970 25 1 16.1275 3.8878 -1.2511 26 1 16.6333 1.5310 -0.9864 27 1 15.4465 2.3027 -2.9553 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.9883 3.4635 1.3076 32 1 0.6635 2.2778 1.3969 33 1 2.2354 1.9150 2.1492 34 1 3.1510 4.0860 -2.0604 35 1 2.3834 4.1115 -0.4547 36 1 3.7906 5.1501 -0.7850 37 1 6.1420 2.6614 0.1773 38 1 5.8984 4.3555 -0.3116 39 1 5.3969 4.1178 -3.6728 40 1 6.2215 5.1595 -2.4277 41 1 8.2679 4.4322 -3.5756 42 1 7.4739 2.9093 -4.1643 43 1 10.3409 3.8719 -1.9963 44 1 10.2671 2.2010 -2.6053 45 1 14.8291 1.6038 1.0751 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001739771332.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:44:00 Heat of formation + Delta-G solvation = -20.538500 kcal Electronic energy + Delta-G solvation = -25676.105177 eV Core-core repulsion = 21948.324325 eV Total energy + Delta-G solvation = -3727.780852 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 346.117 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.76519 -39.76138 -37.45721 -35.77712 -33.75846 -32.40487 -30.78163 -29.40602 -28.96345 -28.07281 -26.98237 -25.45959 -25.08098 -23.14949 -22.12611 -19.74486 -18.92920 -17.75129 -17.50701 -17.20458 -16.58735 -16.25937 -15.94866 -15.22556 -15.00164 -14.78178 -14.64915 -14.36089 -14.27654 -13.98178 -13.83423 -13.69671 -13.38278 -13.22055 -12.95545 -12.78820 -12.62843 -12.59947 -12.45887 -12.33389 -12.06382 -12.00159 -11.71951 -11.62676 -11.04569 -11.00575 -10.80335 -10.73918 -10.18407 -10.03565 -9.79544 -9.28094 -9.04586 -9.03085 -8.52454 -8.20010 -7.98789 -6.47135 -6.18849 -3.89420 1.09949 2.13890 2.36278 2.50814 2.93222 3.13169 3.23942 3.27409 3.32068 3.61088 4.00918 4.14662 4.22675 4.36212 4.47042 4.62734 4.67687 4.71000 4.74946 4.76634 4.88270 4.95305 5.01787 5.02982 5.09822 5.16030 5.22348 5.28164 5.32250 5.35289 5.46241 5.53524 5.55841 5.61296 5.83897 5.87648 5.99136 6.02955 6.17500 6.31581 7.00218 7.61935 7.85898 7.92500 8.37761 8.60110 9.26050 10.88570 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.020847 B = 0.002091 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.780910 B =13388.834841 C =14123.094900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.185 6.185 3 C -0.094 4.094 4 H 0.107 0.893 5 C -0.144 4.144 6 C 0.530 3.470 7 O -0.501 6.501 8 N -0.610 5.610 9 C 0.072 3.928 10 C 0.110 3.890 11 C 0.124 3.876 12 H 0.090 0.910 13 C -0.153 4.153 14 C 0.102 3.898 15 N -0.648 5.648 16 C 0.560 3.440 17 O -0.507 6.507 18 C -0.144 4.144 19 S -0.059 6.059 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.075 0.925 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.108 0.892 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.844 7.410 -7.570 32.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.041 5.959 3 C -0.226 4.226 4 H 0.126 0.874 5 C -0.203 4.203 6 C 0.314 3.686 7 O -0.374 6.374 8 N -0.345 5.345 9 C -0.071 4.071 10 C -0.013 4.013 11 C 0.018 3.982 12 H 0.108 0.892 13 C -0.191 4.191 14 C -0.021 4.021 15 N -0.388 5.388 16 C 0.350 3.650 17 O -0.381 6.381 18 C -0.294 4.294 19 S 0.168 5.832 20 C -0.683 4.683 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.094 0.906 29 H 0.123 0.877 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.126 0.874 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.113 0.887 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -29.753 5.290 -5.423 30.702 hybrid contribution 0.400 1.738 -2.103 2.758 sum -29.352 7.029 -7.527 31.106 Atomic orbital electron populations 1.23557 0.95865 1.06737 1.04780 1.87671 1.04584 1.05841 1.97823 1.23369 0.97334 0.98516 1.03349 0.87441 1.22041 1.01892 1.01197 0.95188 1.19712 0.88789 0.82578 0.77472 1.90841 1.60162 1.38943 1.47429 1.47658 1.07067 1.14274 1.65518 1.21952 0.94315 0.90810 1.00022 1.21818 0.78320 1.03157 0.98048 1.22949 0.81257 0.98100 0.95854 0.89183 1.23526 0.97746 0.98408 0.99391 1.22794 0.96376 0.96812 0.86128 1.49778 1.05303 1.65369 1.18384 1.19974 0.85039 0.75591 0.84393 1.90728 1.84525 1.44320 1.18493 1.23474 0.94662 1.05052 1.06254 1.85439 0.96671 1.85521 1.15616 1.22859 0.91707 1.51352 1.02411 0.90961 1.24999 0.99051 0.94575 0.95005 1.70019 1.27841 1.41484 1.10873 0.86162 0.81658 0.78143 0.79495 1.20285 1.20739 1.19709 0.90609 0.87748 0.90396 0.91009 0.91213 0.90355 0.92210 0.90945 0.90479 0.87353 0.89842 0.89562 0.88694 0.90127 0.89970 0.89427 0.89374 0.92179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 10.45 101.05 1.06 0.28 16 2 S -0.18 -1.91 21.04 -107.50 -2.26 -4.17 16 3 C -0.09 -0.79 2.33 -27.88 -0.06 -0.85 16 4 H 0.11 0.61 6.98 -51.93 -0.36 0.24 16 5 C -0.14 -0.92 8.83 37.16 0.33 -0.59 16 6 C 0.53 6.47 6.83 -10.99 -0.08 6.40 16 7 O -0.50 -8.90 15.60 5.56 0.09 -8.81 16 8 N -0.61 -5.96 2.87 -181.57 -0.52 -6.48 16 9 C 0.07 0.35 10.00 59.85 0.60 0.94 16 10 C 0.11 1.38 5.21 -4.04 -0.02 1.36 16 11 C 0.12 1.48 4.29 -72.39 -0.31 1.17 16 12 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 13 C -0.15 -1.16 8.00 -26.36 -0.21 -1.37 16 14 C 0.10 1.02 8.41 -8.64 -0.07 0.95 16 15 N -0.65 -9.75 3.57 -177.61 -0.63 -10.39 16 16 C 0.56 11.40 8.02 -10.98 -0.09 11.31 16 17 O -0.51 -12.38 15.21 5.55 0.08 -12.29 16 18 C -0.14 -3.09 5.99 36.01 0.22 -2.87 16 19 S -0.06 -1.66 20.57 -107.50 -2.21 -3.88 16 20 C -0.54 -15.59 9.50 30.94 0.29 -15.30 16 21 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.67 13.22 55.49 0.73 -25.93 16 24 Si 0.92 21.77 29.55 -169.99 -5.02 16.75 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 28 H 0.07 0.32 8.14 -51.92 -0.42 -0.11 16 29 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.34 7.14 -51.93 -0.37 -0.03 16 31 H 0.07 0.36 6.75 -51.93 -0.35 0.01 16 32 H 0.07 0.31 6.92 -51.93 -0.36 -0.05 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.07 0.23 4.96 -51.93 -0.26 -0.03 16 36 H 0.08 0.29 7.94 -51.93 -0.41 -0.12 16 37 H 0.11 1.92 6.20 -51.93 -0.32 1.60 16 38 H 0.08 0.92 7.69 -51.93 -0.40 0.52 16 39 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.09 0.65 7.93 -51.92 -0.41 0.24 16 41 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 44 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 45 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 396.38 15.07 5.97 5.97 Total: -1.00 -39.24 396.38 -9.24 -48.48 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -7.02 Total: -2.71 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 1.55 Total: 3.45 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: -0.42 Total: -42.80 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: 0.17 Total: -21.10 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -4.47 Total: -8.05 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -39.24 -9.24 -48.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739771332.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.940 kcal (2) G-P(sol) polarization free energy of solvation -39.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds