Wall clock time and date at job start Sat Apr 11 2020 07:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 C 1.81399 * 102.99831 * 2 1 4 4 H 1.08998 * 109.47175 * 304.99999 * 3 2 1 5 5 C 1.53004 * 109.47125 * 65.00003 * 3 2 1 6 6 C 1.50699 * 109.47103 * 184.99616 * 3 2 1 7 7 O 1.21281 * 119.99954 * 340.00284 * 6 3 2 8 8 N 1.34777 * 119.99912 * 159.99780 * 6 3 2 9 9 C 1.46498 * 120.00085 * 354.85408 * 8 6 3 10 10 C 1.46501 * 120.00039 * 174.84892 * 8 6 3 11 11 C 1.53003 * 109.46727 * 94.89238 * 10 8 6 12 12 H 1.08994 * 112.78365 * 316.03045 * 11 10 8 13 13 C 1.53494 * 113.46712 * 86.81894 * 11 10 8 14 14 C 1.53234 * 83.43381 * 140.67363 * 13 11 10 15 15 N 1.47061 * 88.08371 * 334.10445 * 14 13 11 16 16 C 1.34781 * 136.05771 * 207.20764 * 15 14 13 17 17 O 1.21285 * 119.99977 * 174.65398 * 16 15 14 18 18 C 1.50701 * 119.99780 * 354.64838 * 16 15 14 19 19 S 1.81004 * 109.46799 * 180.02562 * 18 16 15 20 20 C 1.76202 * 99.99755 * 180.02562 * 19 18 16 21 21 H 1.08001 * 120.00117 * 359.97438 * 20 19 18 22 22 C 1.38804 * 119.99774 * 180.02562 * 20 19 18 23 23 N 1.31625 * 120.00086 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99717 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.46983 * 90.00040 * 24 22 20 26 26 H 1.48498 * 109.46710 * 209.99949 * 24 22 20 27 27 H 1.48503 * 109.47162 * 329.99892 * 24 22 20 28 28 H 1.09001 * 109.46683 * 60.00119 * 1 2 3 29 29 H 1.08997 * 109.46645 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46627 * 300.00074 * 1 2 3 31 31 H 1.08996 * 109.47338 * 179.97438 * 5 3 2 32 32 H 1.09004 * 109.47014 * 299.99938 * 5 3 2 33 33 H 1.08998 * 109.47097 * 59.99948 * 5 3 2 34 34 H 1.08997 * 109.47123 * 269.99511 * 9 8 6 35 35 H 1.08998 * 109.47186 * 30.00178 * 9 8 6 36 36 H 1.09000 * 109.47002 * 149.99926 * 9 8 6 37 37 H 1.09001 * 109.47111 * 334.89945 * 10 8 6 38 38 H 1.08997 * 109.47291 * 214.89458 * 10 8 6 39 39 H 1.08997 * 114.20539 * 254.43292 * 13 11 10 40 40 H 1.09008 * 114.20762 * 27.06199 * 13 11 10 41 41 H 1.08996 * 113.38489 * 219.28992 * 14 13 11 42 42 H 1.08999 * 113.46550 * 88.93032 * 14 13 11 43 43 H 1.08990 * 109.46889 * 60.00580 * 18 16 15 44 44 H 1.08998 * 109.47084 * 299.99926 * 18 16 15 45 45 H 0.96998 * 120.00020 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 -0.8418 5 6 1.7428 2.4016 1.3074 6 6 3.7142 1.9386 -0.1237 7 8 4.4551 1.0200 0.1556 8 7 4.2253 3.1124 -0.5450 9 6 3.3302 4.1835 -0.9897 10 6 5.6758 3.3173 -0.5579 11 6 6.2240 2.9944 -1.9494 12 1 5.8027 2.0801 -2.3673 13 6 6.1784 4.1859 -2.9160 14 6 7.5409 3.6478 -3.3653 15 7 7.6914 3.0528 -2.0289 16 6 8.7209 2.7152 -1.2272 17 8 8.5075 2.3147 -0.1025 18 6 10.1370 2.8353 -1.7284 19 16 11.2832 2.3106 -0.4295 20 6 12.8180 2.5471 -1.2621 21 1 12.8306 2.9167 -2.2768 22 6 14.0108 2.2575 -0.6141 23 7 13.9955 1.8066 0.6224 24 14 15.6380 2.5076 -1.4970 25 1 16.1275 3.8878 -1.2511 26 1 16.6333 1.5310 -0.9864 27 1 15.4465 2.3027 -2.9553 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.9883 3.4635 1.3076 32 1 0.6635 2.2778 1.3969 33 1 2.2354 1.9150 2.1492 34 1 3.1510 4.0860 -2.0604 35 1 2.3834 4.1115 -0.4547 36 1 3.7906 5.1501 -0.7850 37 1 6.1420 2.6614 0.1773 38 1 5.8984 4.3555 -0.3116 39 1 5.3969 4.1178 -3.6728 40 1 6.2215 5.1595 -2.4277 41 1 8.2679 4.4322 -3.5756 42 1 7.4739 2.9093 -4.1643 43 1 10.3409 3.8719 -1.9963 44 1 10.2671 2.2010 -2.6053 45 1 14.8291 1.6038 1.0751 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001739771332.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:44:00 Heat of formation + Delta-G solvation = -49.084706 kcal Electronic energy + Delta-G solvation = -25677.343033 eV Core-core repulsion = 21948.324325 eV Total energy + Delta-G solvation = -3729.018708 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 346.117 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.78880 -40.79924 -38.90940 -36.69479 -34.61996 -34.45162 -32.21924 -30.13118 -29.54114 -29.44639 -27.68101 -27.59617 -25.79136 -23.96766 -23.21285 -20.57176 -20.33689 -19.51206 -18.38843 -18.15015 -17.89164 -17.19718 -17.02566 -16.90441 -16.49376 -16.17035 -15.78586 -15.46261 -15.28865 -14.97666 -14.69308 -14.50690 -14.29087 -14.20558 -13.87753 -13.82891 -13.68043 -13.43489 -13.36463 -13.21497 -13.17309 -12.95841 -12.90816 -12.68145 -12.62922 -12.61734 -12.41493 -11.77103 -11.72336 -11.16997 -11.01253 -10.81463 -10.77424 -10.32368 -9.95232 -9.66017 -8.76105 -8.72601 -8.37242 -6.17201 0.44527 1.16265 1.39107 1.41041 1.42284 1.52173 1.55391 1.64514 1.76889 2.15920 2.24767 2.96536 3.17553 3.29334 3.38538 3.66983 3.76949 3.85926 3.90716 3.95161 4.05134 4.20715 4.26216 4.35945 4.38182 4.39913 4.45056 4.56156 4.57204 4.58141 4.62727 4.71179 4.75394 4.88044 4.93188 4.96629 4.99960 5.13567 5.24167 5.38000 5.43525 6.16712 6.22010 6.62166 7.01111 7.03016 7.10102 8.72277 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.020847 B = 0.002091 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.780910 B =13388.834841 C =14123.094900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 S -0.288 6.288 3 C -0.069 4.069 4 H 0.146 0.854 5 C -0.141 4.141 6 C 0.518 3.482 7 O -0.573 6.573 8 N -0.601 5.601 9 C 0.060 3.940 10 C 0.115 3.885 11 C 0.115 3.885 12 H 0.078 0.922 13 C -0.116 4.116 14 C 0.093 3.907 15 N -0.651 5.651 16 C 0.554 3.446 17 O -0.565 6.565 18 C -0.115 4.115 19 S -0.156 6.156 20 C -0.546 4.546 21 H 0.083 0.917 22 C 0.011 3.989 23 N -0.912 5.912 24 Si 1.003 2.997 25 H -0.265 1.265 26 H -0.278 1.278 27 H -0.257 1.257 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.048 0.952 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.045 0.955 38 H 0.101 0.899 39 H 0.129 0.871 40 H 0.113 0.887 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.109 0.891 44 H 0.100 0.900 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.345 10.684 -11.122 36.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 S -0.063 6.063 3 C -0.200 4.200 4 H 0.164 0.836 5 C -0.199 4.199 6 C 0.305 3.695 7 O -0.452 6.452 8 N -0.334 5.334 9 C -0.081 4.081 10 C -0.009 4.009 11 C 0.011 3.989 12 H 0.096 0.904 13 C -0.153 4.153 14 C -0.028 4.028 15 N -0.389 5.389 16 C 0.344 3.656 17 O -0.444 6.444 18 C -0.266 4.266 19 S 0.072 5.928 20 C -0.693 4.693 21 H 0.102 0.898 22 C -0.194 4.194 23 N -0.549 5.549 24 Si 0.824 3.176 25 H -0.190 1.190 26 H -0.203 1.203 27 H -0.181 1.181 28 H 0.115 0.885 29 H 0.127 0.873 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.116 0.884 33 H 0.067 0.933 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.063 0.937 38 H 0.119 0.881 39 H 0.147 0.853 40 H 0.131 0.869 41 H 0.114 0.886 42 H 0.118 0.882 43 H 0.127 0.873 44 H 0.119 0.881 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -32.335 8.640 -9.054 34.673 hybrid contribution 0.986 0.759 -1.054 1.631 sum -31.349 9.399 -10.108 34.253 Atomic orbital electron populations 1.23565 0.90535 1.07651 1.06570 1.88070 1.10523 1.09597 1.98115 1.23306 0.94363 0.96567 1.05785 0.83638 1.22059 1.03257 1.01732 0.92900 1.20525 0.90346 0.82268 0.76356 1.90814 1.62136 1.41589 1.50635 1.47742 1.06438 1.14840 1.64392 1.22388 0.94187 0.89655 1.01823 1.21567 0.80077 1.02352 0.96952 1.23229 0.78918 1.00157 0.96631 0.90413 1.23489 0.97137 0.96615 0.98045 1.23265 0.98268 0.97469 0.83829 1.49876 1.05755 1.63260 1.19997 1.19749 0.85775 0.75734 0.84368 1.90711 1.85341 1.47218 1.21099 1.23249 0.93847 1.06062 1.03467 1.85679 0.99800 1.86641 1.20718 1.23182 0.91793 1.51549 1.02805 0.89844 1.26211 1.03609 0.93776 0.95785 1.70198 1.29121 1.42636 1.12901 0.84892 0.75649 0.78488 0.78545 1.18982 1.20271 1.18121 0.88459 0.87320 0.88775 0.88932 0.88368 0.93315 0.89624 0.88811 0.88699 0.93654 0.88121 0.85320 0.86908 0.88635 0.88240 0.87269 0.88123 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 10.45 113.37 1.19 0.17 16 2 S -0.29 -6.10 21.04 -56.49 -1.19 -7.29 16 3 C -0.07 -1.07 2.33 29.85 0.07 -1.00 16 4 H 0.15 1.08 6.98 -2.39 -0.02 1.07 16 5 C -0.14 -1.54 8.83 71.98 0.64 -0.91 16 6 C 0.52 13.03 6.83 87.66 0.60 13.63 16 7 O -0.57 -22.52 15.60 -3.03 -0.05 -22.57 16 8 N -0.60 -11.11 2.87 -846.77 -2.43 -13.54 16 9 C 0.06 0.32 10.00 127.77 1.28 1.59 16 10 C 0.11 2.94 5.21 86.38 0.45 3.39 16 11 C 0.11 2.64 4.29 41.79 0.18 2.82 16 12 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 13 C -0.12 -1.22 8.00 30.84 0.25 -0.97 16 14 C 0.09 1.54 8.41 83.09 0.70 2.23 16 15 N -0.65 -19.29 3.57 -834.22 -2.98 -22.26 16 16 C 0.55 23.47 8.02 87.66 0.70 24.18 16 17 O -0.57 -29.89 15.21 -3.05 -0.05 -29.94 16 18 C -0.12 -5.03 5.99 71.24 0.43 -4.60 16 19 S -0.16 -9.20 20.57 -56.49 -1.16 -10.37 16 20 C -0.55 -32.36 9.50 67.96 0.65 -31.72 16 21 H 0.08 4.58 7.80 -2.91 -0.02 4.55 16 22 C 0.01 0.63 5.49 84.86 0.47 1.10 16 23 N -0.91 -57.95 13.22 21.65 0.29 -57.66 16 24 Si 1.00 44.73 29.55 68.60 2.03 46.76 16 25 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 26 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 27 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 28 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.09 0.53 7.14 -2.39 -0.02 0.52 16 31 H 0.09 0.63 6.75 -2.39 -0.02 0.62 16 32 H 0.10 0.54 6.92 -2.38 -0.02 0.52 16 33 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.09 0.09 8.14 -2.39 -0.02 0.08 16 35 H 0.09 0.13 4.96 -2.39 -0.01 0.12 16 36 H 0.09 0.24 7.94 -2.39 -0.02 0.22 16 37 H 0.04 1.78 6.20 -2.39 -0.01 1.77 16 38 H 0.10 2.14 7.69 -2.39 -0.02 2.12 16 39 H 0.13 0.44 8.14 -2.39 -0.02 0.43 16 40 H 0.11 0.90 7.93 -2.38 -0.02 0.88 16 41 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.11 4.23 8.14 -2.40 -0.02 4.22 16 44 H 0.10 4.10 8.14 -2.40 -0.02 4.08 16 45 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 Total: -1.00 -98.72 396.38 3.03 -95.70 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 0.98 Total: 11.25 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 7.58 Total: 9.92 kcal Atomic # 7 Polarization: -88.35 SS G_CDS: -5.12 Total: -93.47 kcal Atomic # 8 Polarization: -52.41 SS G_CDS: -0.09 Total: -52.51 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 16 Polarization: -15.30 SS G_CDS: -2.35 Total: -17.66 kcal Total: -98.72 3.03 -95.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739771332.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.611 kcal (2) G-P(sol) polarization free energy of solvation -98.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds