Wall clock time and date at job start Sat Apr 11 2020 07:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81399 * 103.00154 * 2 1 4 4 H 1.09001 * 109.47232 * 54.99841 * 3 2 1 5 5 C 1.53006 * 109.47004 * 295.00238 * 3 2 1 6 6 C 1.50698 * 109.46898 * 175.00372 * 3 2 1 7 7 O 1.21274 * 120.00128 * 25.00114 * 6 3 2 8 8 N 1.34778 * 119.99532 * 204.99871 * 6 3 2 9 9 C 1.46501 * 120.00145 * 0.02562 * 8 6 3 10 10 C 1.46499 * 119.99791 * 179.97438 * 8 6 3 11 11 H 1.08994 * 110.88980 * 359.30300 * 10 8 6 12 12 C 1.55157 * 111.00128 * 123.18292 * 10 8 6 13 13 C 1.54323 * 102.94261 * 153.57785 * 12 10 8 14 14 N 1.47019 * 107.27098 * 337.80669 * 13 12 10 15 15 C 1.34779 * 125.64979 * 179.00108 * 14 13 12 16 16 O 1.21281 * 119.99898 * 179.97438 * 15 14 13 17 17 C 1.50700 * 120.00165 * 359.96838 * 15 14 13 18 18 S 1.80998 * 109.47207 * 180.02562 * 17 15 14 19 19 C 1.76203 * 99.99917 * 180.02562 * 18 17 15 20 20 H 1.08001 * 119.99833 * 359.97438 * 19 18 17 21 21 C 1.38798 * 120.00082 * 179.97438 * 19 18 17 22 22 N 1.31629 * 120.00069 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99856 * 0.02562 * 21 19 18 24 24 H 1.48493 * 109.47558 * 89.99914 * 23 21 19 25 25 H 1.48504 * 109.47009 * 210.00157 * 23 21 19 26 26 H 1.48497 * 109.47319 * 329.99662 * 23 21 19 27 27 C 1.47468 * 108.72181 * 358.97453 * 14 13 12 28 28 H 1.09004 * 109.47230 * 59.99615 * 1 2 3 29 29 H 1.09003 * 109.47402 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47264 * 299.99851 * 1 2 3 31 31 H 1.09001 * 109.47002 * 179.97438 * 5 3 2 32 32 H 1.08993 * 109.46955 * 300.00150 * 5 3 2 33 33 H 1.09000 * 109.47050 * 59.99979 * 5 3 2 34 34 H 1.09003 * 109.47447 * 90.00067 * 9 8 6 35 35 H 1.09002 * 109.47242 * 209.99861 * 9 8 6 36 36 H 1.08997 * 109.46982 * 329.99684 * 9 8 6 37 37 H 1.09003 * 110.72308 * 271.93784 * 12 10 8 38 38 H 1.08999 * 110.72582 * 35.21345 * 12 10 8 39 39 H 1.09005 * 109.88920 * 97.22258 * 13 12 10 40 40 H 1.09002 * 109.88363 * 218.38846 * 13 12 10 41 41 H 1.09007 * 109.47229 * 300.00494 * 17 15 14 42 42 H 1.08997 * 109.47139 * 60.00010 * 17 15 14 43 43 H 0.96996 * 120.00033 * 179.97438 * 22 21 19 44 44 H 1.08999 * 110.35072 * 265.25383 * 27 14 13 45 45 H 1.09003 * 110.40221 * 142.91973 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 0.8418 5 6 1.7428 2.4016 -1.3074 6 6 3.7142 1.9384 0.1237 7 8 4.4584 1.0530 -0.2410 8 7 4.2217 3.0754 0.6398 9 6 3.3227 4.1448 1.0809 10 6 5.6722 3.2415 0.7606 11 1 6.1960 2.3553 0.4023 12 6 6.1509 4.5120 0.0097 13 6 7.4388 4.8969 0.7679 14 7 7.3563 4.2903 2.1045 15 6 8.2969 4.3769 3.0659 16 8 8.1215 3.8345 4.1364 17 6 9.5665 5.1476 2.8107 18 16 10.6202 5.0783 4.2807 19 6 11.9914 6.0320 3.7195 20 1 11.9872 6.4495 2.7235 21 6 13.0769 6.2467 4.5574 22 7 14.1015 6.9587 4.1380 23 14 13.0844 5.5239 6.2799 24 1 13.6945 4.1705 6.2462 25 1 13.8744 6.4007 7.1812 26 1 11.6902 5.4260 6.7818 27 6 6.0737 3.5717 2.2198 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.9876 3.4637 -1.3072 32 1 2.2353 1.9149 -2.1491 33 1 0.6635 2.2779 -1.3969 34 1 3.0695 3.9967 2.1307 35 1 3.8171 5.1085 0.9588 36 1 2.4127 4.1248 0.4813 37 1 6.3710 4.2838 -1.0332 38 1 5.4082 5.3064 0.0832 39 1 8.3101 4.5107 0.2388 40 1 7.5069 5.9812 0.8564 41 1 10.0945 4.7080 1.9645 42 1 9.3224 6.1860 2.5869 43 1 14.8599 7.1090 4.7237 44 1 5.3222 4.2097 2.6849 45 1 6.2023 2.6546 2.7948 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001743096364.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:44:06 Heat of formation + Delta-G solvation = -81.593355 kcal Electronic energy + Delta-G solvation = -25563.059298 eV Core-core repulsion = 21832.630909 eV Total energy + Delta-G solvation = -3730.428389 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 346.117 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.68205 -40.69525 -38.65066 -36.34320 -34.68390 -34.39809 -32.33499 -30.95021 -29.73562 -29.30899 -27.95965 -27.82071 -25.85981 -24.40028 -22.40500 -20.85168 -20.40132 -19.63804 -18.77111 -18.26983 -17.84045 -17.32780 -17.14317 -16.65423 -16.48483 -16.36569 -15.69997 -15.48714 -15.17316 -14.96357 -14.89390 -14.68648 -14.52753 -14.25587 -14.19463 -13.82297 -13.73864 -13.49995 -13.34764 -13.33625 -13.21488 -13.03273 -12.92207 -12.81108 -12.71694 -12.61917 -12.52091 -11.88447 -11.77270 -11.18274 -11.12763 -11.00177 -10.80384 -10.55776 -9.98446 -9.69081 -9.02652 -8.75131 -8.52484 -6.23962 0.41423 0.92628 1.30670 1.39467 1.40314 1.44913 1.50061 1.62701 1.72870 2.12823 2.24112 2.66141 2.85746 3.23512 3.29856 3.50860 3.74849 3.81370 3.87429 3.92742 4.06568 4.11848 4.16273 4.26294 4.35642 4.37234 4.38547 4.53121 4.54576 4.63352 4.66299 4.71226 4.76368 4.82965 4.92250 4.97696 5.04520 5.13249 5.16793 5.40259 5.69953 6.10462 6.14690 6.25056 6.92612 6.93860 6.97937 8.59714 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.031128 B = 0.001889 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.309367 B =14817.033273 C =15221.625276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 S -0.282 6.282 3 C -0.075 4.075 4 H 0.136 0.864 5 C -0.139 4.139 6 C 0.530 3.470 7 O -0.566 6.566 8 N -0.595 5.595 9 C 0.054 3.946 10 C 0.134 3.866 11 H 0.091 0.909 12 C -0.123 4.123 13 C 0.091 3.909 14 N -0.614 5.614 15 C 0.549 3.451 16 O -0.563 6.563 17 C -0.101 4.101 18 S -0.178 6.178 19 C -0.528 4.528 20 H 0.064 0.936 21 C 0.047 3.953 22 N -0.915 5.915 23 Si 0.912 3.088 24 H -0.264 1.264 25 H -0.257 1.257 26 H -0.237 1.237 27 C 0.102 3.898 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.112 0.888 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.110 0.890 42 H 0.117 0.883 43 H 0.277 0.723 44 H 0.091 0.909 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.173 -4.344 -13.845 37.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 S -0.057 6.057 3 C -0.206 4.206 4 H 0.154 0.846 5 C -0.198 4.198 6 C 0.318 3.682 7 O -0.444 6.444 8 N -0.327 5.327 9 C -0.087 4.087 10 C 0.028 3.972 11 H 0.109 0.891 12 C -0.162 4.162 13 C -0.031 4.031 14 N -0.350 5.350 15 C 0.337 3.663 16 O -0.442 6.442 17 C -0.252 4.252 18 S 0.049 5.951 19 C -0.675 4.675 20 H 0.083 0.917 21 C -0.158 4.158 22 N -0.552 5.552 23 Si 0.734 3.266 24 H -0.189 1.189 25 H -0.181 1.181 26 H -0.161 1.161 27 C -0.022 4.022 28 H 0.114 0.886 29 H 0.127 0.873 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.076 0.924 33 H 0.111 0.889 34 H 0.087 0.913 35 H 0.116 0.884 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.130 0.870 39 H 0.096 0.904 40 H 0.113 0.887 41 H 0.128 0.872 42 H 0.135 0.865 43 H 0.087 0.913 44 H 0.109 0.891 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -33.152 -6.376 -12.382 35.958 hybrid contribution 0.378 1.266 -0.417 1.386 sum -32.774 -5.109 -12.799 35.553 Atomic orbital electron populations 1.23566 0.90753 1.07655 1.06488 1.87911 1.10393 1.09266 1.98108 1.23331 0.94664 0.96724 1.05875 0.84629 1.22042 1.03142 1.01814 0.92756 1.20300 0.90171 0.81312 0.76454 1.90748 1.61612 1.42162 1.49925 1.47609 1.05968 1.17347 1.61764 1.22339 0.94541 0.90419 1.01358 1.21999 0.81200 1.00123 0.93844 0.89109 1.23006 0.96292 0.96805 1.00060 1.22385 0.99942 0.99802 0.80944 1.48254 1.18101 1.53358 1.15251 1.19703 0.83711 0.79993 0.82900 1.90696 1.79227 1.48183 1.26087 1.23193 0.95430 1.04311 1.02242 1.84762 1.18535 1.70567 1.21238 1.22428 1.03982 1.37324 1.03806 0.91744 1.25526 0.93866 0.94236 1.02188 1.70007 1.07642 1.38924 1.38670 0.85895 0.81143 0.79396 0.80117 1.18892 1.18140 1.16143 1.22474 0.85332 0.96848 0.97517 0.88571 0.87285 0.88943 0.88797 0.92391 0.88921 0.91274 0.88401 0.87886 0.87906 0.86968 0.90389 0.88722 0.87183 0.86523 0.91334 0.89135 0.92729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 10.45 113.37 1.19 0.44 16 2 S -0.28 -4.81 21.10 -56.49 -1.19 -6.00 16 3 C -0.07 -0.85 2.33 29.85 0.07 -0.78 16 4 H 0.14 0.77 6.92 -2.39 -0.02 0.75 16 5 C -0.14 -0.83 8.86 71.98 0.64 -0.19 16 6 C 0.53 9.86 6.80 87.66 0.60 10.45 16 7 O -0.57 -16.58 15.52 -3.01 -0.05 -16.62 16 8 N -0.59 -7.96 2.91 -814.85 -2.37 -10.33 16 9 C 0.05 0.24 8.62 127.77 1.10 1.34 16 10 C 0.13 2.31 3.45 46.38 0.16 2.47 16 11 H 0.09 2.16 7.01 -2.39 -0.02 2.14 16 12 C -0.12 -1.36 6.51 31.78 0.21 -1.15 16 13 C 0.09 1.52 6.49 86.73 0.56 2.08 16 14 N -0.61 -15.84 3.33 -811.69 -2.70 -18.54 16 15 C 0.55 19.93 7.87 87.66 0.69 20.62 16 16 O -0.56 -25.37 16.12 -3.03 -0.05 -25.42 16 17 C -0.10 -3.89 5.35 71.24 0.38 -3.51 16 18 S -0.18 -9.11 18.55 -56.49 -1.05 -10.15 16 19 C -0.53 -30.78 10.04 67.95 0.68 -30.10 16 20 H 0.06 3.94 8.03 -2.91 -0.02 3.91 16 21 C 0.05 2.79 5.50 84.86 0.47 3.26 16 22 N -0.91 -55.58 13.97 21.65 0.30 -55.28 16 23 Si 0.91 45.28 27.74 68.60 1.90 47.18 16 24 H -0.26 -12.88 7.11 99.48 0.71 -12.17 16 25 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 26 H -0.24 -11.79 6.74 99.48 0.67 -11.12 16 27 C 0.10 2.25 6.48 86.85 0.56 2.81 16 28 H 0.10 0.29 7.14 -2.39 -0.02 0.27 16 29 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.09 0.16 6.84 -2.39 -0.02 0.14 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.09 0.17 6.92 -2.39 -0.02 0.16 16 34 H 0.07 0.29 8.08 -2.39 -0.02 0.27 16 35 H 0.10 0.17 6.21 -2.39 -0.01 0.15 16 36 H 0.10 -0.07 5.17 -2.39 -0.01 -0.09 16 37 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.11 0.64 6.20 -2.39 -0.01 0.63 16 39 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 42 H 0.12 4.03 8.14 -2.40 -0.02 4.01 16 43 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 44 H 0.09 1.64 7.10 -2.39 -0.02 1.63 16 45 H 0.05 1.54 8.04 -2.39 -0.02 1.52 16 Total: -1.00 -85.67 386.04 3.05 -82.62 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: 0.95 Total: 4.80 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: 7.30 Total: 7.75 kcal Atomic # 7 Polarization: -79.38 SS G_CDS: -4.77 Total: -84.15 kcal Atomic # 8 Polarization: -41.95 SS G_CDS: -0.10 Total: -42.04 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.90 Total: 47.18 kcal Atomic # 16 Polarization: -13.91 SS G_CDS: -2.24 Total: -16.15 kcal Total: -85.67 3.05 -82.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001743096364.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.022 kcal (2) G-P(sol) polarization free energy of solvation -85.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds