Wall clock time and date at job start Sat Apr 11 2020 07:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81391 * 102.99942 * 2 1 4 4 H 1.08999 * 109.47443 * 55.00124 * 3 2 1 5 5 C 1.52998 * 109.47397 * 294.99853 * 3 2 1 6 6 C 1.50703 * 109.47263 * 174.99868 * 3 2 1 7 7 O 1.21283 * 119.99488 * 24.99736 * 6 3 2 8 8 N 1.34777 * 120.00290 * 205.00176 * 6 3 2 9 9 C 1.46498 * 119.99828 * 180.27728 * 8 6 3 10 10 H 1.08999 * 109.50107 * 34.65933 * 9 8 6 11 11 C 1.53042 * 109.49741 * 154.72127 * 9 8 6 12 12 C 1.53039 * 109.53625 * 181.31420 * 11 9 8 13 13 C 1.53192 * 109.31600 * 298.63332 * 12 11 9 14 14 N 1.46932 * 108.77338 * 54.63336 * 13 12 11 15 15 C 1.34777 * 120.62529 * 126.41363 * 14 13 12 16 16 O 1.21288 * 119.99746 * 180.02562 * 15 14 13 17 17 C 1.50698 * 120.00395 * 359.97438 * 15 14 13 18 18 S 1.80995 * 109.47342 * 179.97438 * 17 15 14 19 19 C 1.76195 * 100.00279 * 180.02562 * 18 17 15 20 20 H 1.08004 * 120.00008 * 0.02562 * 19 18 17 21 21 C 1.38798 * 120.00321 * 180.02562 * 19 18 17 22 22 N 1.31629 * 119.99800 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00138 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47413 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47036 * 120.00005 * 23 21 19 26 26 H 1.48502 * 109.47219 * 239.99629 * 23 21 19 27 27 C 1.46916 * 118.74113 * 306.39513 * 14 13 12 28 28 H 1.09004 * 109.47324 * 299.99982 * 1 2 3 29 29 H 1.09002 * 109.47718 * 59.99975 * 1 2 3 30 30 H 1.09005 * 109.47503 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47045 * 300.00514 * 5 3 2 32 32 H 1.09007 * 109.47256 * 59.99915 * 5 3 2 33 33 H 1.08995 * 109.47315 * 180.02562 * 5 3 2 34 34 H 0.97001 * 119.99727 * 359.97438 * 8 6 3 35 35 H 1.08996 * 109.46301 * 301.33597 * 11 9 8 36 36 H 1.09005 * 109.45928 * 61.31110 * 11 9 8 37 37 H 1.08999 * 109.49829 * 58.58792 * 12 11 9 38 38 H 1.09006 * 109.49757 * 178.68837 * 12 11 9 39 39 H 1.08991 * 109.58961 * 174.42381 * 13 12 11 40 40 H 1.09007 * 109.58762 * 294.71223 * 13 12 11 41 41 H 1.08991 * 109.47444 * 300.00772 * 17 15 14 42 42 H 1.09008 * 109.46803 * 60.00309 * 17 15 14 43 43 H 0.97001 * 119.99917 * 180.02562 * 22 21 19 44 44 H 1.08993 * 109.58911 * 293.82038 * 27 14 13 45 45 H 1.08999 * 109.58829 * 173.39100 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7674 0.0000 4 1 1.7294 2.2541 0.8418 5 6 1.7428 2.4015 -1.3073 6 6 3.7142 1.9385 0.1239 7 8 4.4583 1.0530 -0.2408 8 7 4.2216 3.0755 0.6399 9 6 5.6723 3.2442 0.7547 10 1 6.1632 2.7550 -0.0866 11 6 6.0151 4.7357 0.7491 12 6 7.5328 4.9123 0.8359 13 6 8.0394 4.3048 2.1478 14 7 7.5888 2.9085 2.2273 15 6 8.4715 1.9135 2.4448 16 8 8.0871 0.7649 2.5079 17 6 9.9362 2.2279 2.6084 18 16 10.8554 0.6936 2.8857 19 6 12.4880 1.3384 3.0392 20 1 12.6588 2.4016 2.9555 21 6 13.5546 0.4801 3.2676 22 7 13.3463 -0.8156 3.3701 23 14 15.2854 1.1636 3.4297 24 1 15.2508 2.6404 3.2772 25 1 15.8313 0.8172 4.7666 26 1 16.1502 0.5767 2.3747 27 6 6.1578 2.6177 2.0657 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 2.2354 1.9149 -2.1491 32 1 0.6635 2.2778 -1.3970 33 1 1.9884 3.4635 -1.3075 34 1 3.6263 3.7838 0.9313 35 1 5.6489 5.1891 -0.1720 36 1 5.5439 5.2198 1.6045 37 1 8.0066 4.4073 -0.0058 38 1 7.7777 5.9742 0.8084 39 1 9.1285 4.3391 2.1698 40 1 7.6389 4.8686 2.9904 41 1 10.3061 2.7157 1.7067 42 1 10.0721 2.8918 3.4623 43 1 14.0917 -1.4154 3.5301 44 1 5.6019 3.0424 2.9014 45 1 6.0055 1.5388 2.0334 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001745757203.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:44:17 Heat of formation + Delta-G solvation = -102.854013 kcal Electronic energy + Delta-G solvation = -25692.015712 eV Core-core repulsion = 21960.665391 eV Total energy + Delta-G solvation = -3731.350320 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 346.117 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.57172 -40.65102 -38.50229 -35.85276 -34.59876 -34.46640 -33.21807 -31.82888 -30.03098 -29.55296 -27.71374 -26.24683 -25.91899 -23.93860 -22.23294 -21.66100 -20.43722 -19.50877 -18.54878 -18.23310 -17.84831 -17.16589 -16.89334 -16.84930 -16.48471 -16.11572 -15.80025 -15.50405 -15.31732 -15.16474 -14.93438 -14.54107 -14.40283 -14.36542 -14.24410 -13.87124 -13.76170 -13.49658 -13.31485 -13.17644 -12.99998 -12.92117 -12.72874 -12.66382 -12.59481 -12.09137 -12.00485 -11.70885 -11.67324 -11.17022 -11.10731 -10.90902 -10.79616 -10.48054 -10.26629 -9.64894 -8.77259 -8.70439 -8.35341 -6.14982 0.43160 1.22122 1.41413 1.42118 1.46182 1.52472 1.56504 1.64718 1.86882 2.23730 2.26915 2.98741 3.22996 3.52198 3.58713 3.71440 3.80815 3.87621 3.93068 3.95675 4.05468 4.17329 4.22937 4.34764 4.36236 4.39535 4.52724 4.55345 4.61709 4.66374 4.74309 4.77057 4.90189 4.91486 5.03341 5.11912 5.12783 5.19922 5.37357 5.40730 5.54771 6.18944 6.23332 6.40755 7.05222 7.09719 7.14179 8.74433 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.018559 B = 0.002173 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.354523 B =12879.809655 C =14042.134615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.292 6.292 3 C -0.071 4.071 4 H 0.142 0.858 5 C -0.137 4.137 6 C 0.523 3.477 7 O -0.570 6.570 8 N -0.698 5.698 9 C 0.140 3.860 10 H 0.053 0.947 11 C -0.112 4.112 12 C -0.128 4.128 13 C 0.093 3.907 14 N -0.605 5.605 15 C 0.527 3.473 16 O -0.571 6.571 17 C -0.118 4.118 18 S -0.162 6.162 19 C -0.542 4.542 20 H 0.086 0.914 21 C 0.009 3.991 22 N -0.913 5.913 23 Si 1.003 2.997 24 H -0.253 1.253 25 H -0.274 1.274 26 H -0.275 1.275 27 C 0.105 3.895 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.051 0.949 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.424 0.576 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.052 0.948 38 H 0.120 0.880 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.109 0.891 42 H 0.113 0.887 43 H 0.271 0.729 44 H 0.095 0.905 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.272 21.418 -6.840 36.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.067 6.067 3 C -0.203 4.203 4 H 0.160 0.840 5 C -0.195 4.195 6 C 0.309 3.691 7 O -0.448 6.448 8 N -0.352 5.352 9 C 0.034 3.966 10 H 0.072 0.928 11 C -0.150 4.150 12 C -0.167 4.167 13 C -0.029 4.029 14 N -0.339 5.339 15 C 0.315 3.685 16 O -0.450 6.450 17 C -0.269 4.269 18 S 0.065 5.935 19 C -0.689 4.689 20 H 0.104 0.896 21 C -0.195 4.195 22 N -0.550 5.550 23 Si 0.824 3.176 24 H -0.176 1.176 25 H -0.199 1.199 26 H -0.200 1.200 27 C -0.019 4.019 28 H 0.113 0.887 29 H 0.115 0.885 30 H 0.126 0.874 31 H 0.070 0.930 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.263 0.737 35 H 0.113 0.887 36 H 0.122 0.878 37 H 0.071 0.929 38 H 0.138 0.862 39 H 0.108 0.892 40 H 0.121 0.879 41 H 0.127 0.873 42 H 0.131 0.869 43 H 0.080 0.920 44 H 0.113 0.887 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -27.592 18.085 -6.973 33.719 hybrid contribution 0.621 1.680 0.186 1.801 sum -26.971 19.765 -6.787 34.120 Atomic orbital electron populations 1.23553 0.90543 1.07605 1.06549 1.88154 1.10604 1.09866 1.98119 1.23290 0.94530 0.96406 1.06051 0.83978 1.22002 1.03037 1.01837 0.92662 1.20411 0.90194 0.82043 0.76496 1.90829 1.61860 1.42449 1.49621 1.45644 1.07272 1.18631 1.63668 1.21181 0.80533 0.98869 0.96065 0.92822 1.21796 0.96674 0.91115 1.05431 1.21921 0.95234 1.03321 0.96223 1.22223 1.01486 0.79008 1.00141 1.48043 1.06610 1.07896 1.71392 1.20322 0.87965 0.84784 0.75439 1.90706 1.80256 1.22550 1.51446 1.23334 0.93756 1.03487 1.06303 1.85760 1.03934 1.09572 1.94256 1.23219 0.92215 0.96507 1.57006 0.89569 1.26214 1.04602 0.94836 0.93851 1.70215 1.33725 1.04025 1.47034 0.84846 0.75653 0.79026 0.78027 1.17620 1.19903 1.20037 1.21910 0.80641 1.00668 0.98689 0.88711 0.88536 0.87439 0.92970 0.88923 0.88579 0.73675 0.88703 0.87784 0.92912 0.86191 0.89234 0.87943 0.87326 0.86859 0.92024 0.88725 0.93666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 10.45 113.37 1.18 0.09 16 2 S -0.29 -6.31 21.10 -56.49 -1.19 -7.50 16 3 C -0.07 -1.02 3.17 29.85 0.09 -0.92 16 4 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 5 C -0.14 -1.21 9.08 71.98 0.65 -0.56 16 6 C 0.52 11.75 6.92 87.66 0.61 12.36 16 7 O -0.57 -20.78 15.80 -3.04 -0.05 -20.83 16 8 N -0.70 -10.14 5.08 -442.15 -2.25 -12.38 16 9 C 0.14 2.73 2.61 45.07 0.12 2.85 16 10 H 0.05 1.53 7.57 -2.39 -0.02 1.52 16 11 C -0.11 -1.04 5.35 30.62 0.16 -0.88 16 12 C -0.13 -1.53 6.08 30.67 0.19 -1.34 16 13 C 0.09 1.61 6.34 86.36 0.55 2.16 16 14 N -0.60 -17.49 2.97 -818.91 -2.43 -19.92 16 15 C 0.53 21.96 7.72 87.66 0.68 22.64 16 16 O -0.57 -30.35 15.28 -3.05 -0.05 -30.40 16 17 C -0.12 -4.96 4.50 71.24 0.32 -4.64 16 18 S -0.16 -9.51 20.57 -56.49 -1.16 -10.67 16 19 C -0.54 -31.66 9.50 67.95 0.65 -31.01 16 20 H 0.09 4.62 7.80 -2.91 -0.02 4.60 16 21 C 0.01 0.54 5.49 84.86 0.47 1.01 16 22 N -0.91 -57.83 13.22 21.65 0.29 -57.55 16 23 Si 1.00 44.34 29.55 68.60 2.03 46.37 16 24 H -0.25 -10.28 7.11 99.48 0.71 -9.57 16 25 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 26 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 27 C 0.11 2.79 6.01 86.37 0.52 3.31 16 28 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.10 0.57 7.14 -2.39 -0.02 0.55 16 30 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.09 0.42 6.92 -2.38 -0.02 0.40 16 33 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.42 1.95 8.60 -92.71 -0.80 1.15 16 35 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.10 0.39 8.14 -2.38 -0.02 0.37 16 37 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.12 0.66 8.14 -2.38 -0.02 0.64 16 39 H 0.09 1.65 5.93 -2.39 -0.01 1.64 16 40 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 41 H 0.11 4.13 7.69 -2.40 -0.02 4.11 16 42 H 0.11 4.20 7.94 -2.39 -0.02 4.18 16 43 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 44 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.04 1.72 7.01 -2.39 -0.02 1.70 16 Total: -1.00 -97.13 392.62 1.57 -95.56 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 0.20 Total: 12.26 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 6.18 Total: 5.06 kcal Atomic # 7 Polarization: -85.46 SS G_CDS: -4.39 Total: -89.85 kcal Atomic # 8 Polarization: -51.13 SS G_CDS: -0.09 Total: -51.23 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: -15.82 SS G_CDS: -2.35 Total: -18.17 kcal Total: -97.13 1.57 -95.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001745757203.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.292 kcal (2) G-P(sol) polarization free energy of solvation -97.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds