Wall clock time and date at job start Sat Apr 11 2020 07:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81393 * 103.00012 * 2 1 4 4 H 1.08995 * 109.47369 * 305.00139 * 3 2 1 5 5 C 1.52995 * 109.47246 * 65.00231 * 3 2 1 6 6 C 1.50702 * 109.47016 * 184.99765 * 3 2 1 7 7 O 1.21283 * 120.00262 * 340.00314 * 6 3 2 8 8 N 1.34777 * 119.99928 * 159.72220 * 6 3 2 9 9 C 1.46499 * 120.00199 * 180.27479 * 8 6 3 10 10 H 1.09003 * 109.49725 * 34.94046 * 9 8 6 11 11 C 1.53043 * 109.50050 * 155.00334 * 9 8 6 12 12 C 1.53035 * 109.53915 * 181.31959 * 11 9 8 13 13 C 1.53191 * 109.31464 * 298.63427 * 12 11 9 14 14 N 1.46925 * 108.77575 * 54.63468 * 13 12 11 15 15 C 1.34777 * 120.63166 * 126.41359 * 14 13 12 16 16 O 1.21283 * 120.00154 * 180.02562 * 15 14 13 17 17 C 1.50700 * 119.99979 * 0.02562 * 15 14 13 18 18 S 1.80995 * 109.47197 * 179.97438 * 17 15 14 19 19 C 1.76201 * 100.00288 * 180.02562 * 18 17 15 20 20 H 1.08001 * 119.99631 * 0.02562 * 19 18 17 21 21 C 1.38790 * 120.00224 * 180.02562 * 19 18 17 22 22 N 1.31630 * 120.00342 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00110 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46893 * 59.99579 * 23 21 19 25 25 H 1.48496 * 109.47280 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.46987 * 299.99976 * 23 21 19 27 27 C 1.46927 * 118.73967 * 306.39697 * 14 13 12 28 28 H 1.08995 * 109.47215 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47288 * 300.00244 * 1 2 3 30 30 H 1.09004 * 109.47179 * 60.00049 * 1 2 3 31 31 H 1.09007 * 109.46893 * 299.99444 * 5 3 2 32 32 H 1.09001 * 109.47419 * 59.99797 * 5 3 2 33 33 H 1.09007 * 109.47499 * 180.02562 * 5 3 2 34 34 H 0.97000 * 120.00317 * 0.28382 * 8 6 3 35 35 H 1.09003 * 109.45506 * 301.33897 * 11 9 8 36 36 H 1.08994 * 109.45536 * 61.31148 * 11 9 8 37 37 H 1.09006 * 109.49967 * 58.58371 * 12 11 9 38 38 H 1.09001 * 109.49781 * 178.68303 * 12 11 9 39 39 H 1.08998 * 109.58977 * 174.42170 * 13 12 11 40 40 H 1.08996 * 109.58459 * 294.70605 * 13 12 11 41 41 H 1.08998 * 109.46967 * 300.00169 * 17 15 14 42 42 H 1.09009 * 109.46789 * 59.99952 * 17 15 14 43 43 H 0.97003 * 120.00329 * 180.02562 * 22 21 19 44 44 H 1.09010 * 109.58195 * 293.81834 * 27 14 13 45 45 H 1.09003 * 109.58971 * 173.39595 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 1 1.7295 2.2541 -0.8417 5 6 1.7429 2.4015 1.3073 6 6 3.7142 1.9385 -0.1238 7 8 4.4552 1.0198 0.1556 8 7 4.2251 3.1105 -0.5503 9 6 5.6753 3.2748 -0.6764 10 1 6.1216 2.3337 -0.9978 11 6 5.9783 4.3628 -1.7093 12 6 7.4933 4.5123 -1.8658 13 6 8.1018 4.9355 -0.5251 14 7 7.6940 3.9705 0.5050 15 6 8.6146 3.3601 1.2771 16 8 8.2652 2.5651 2.1238 17 6 10.0783 3.6654 1.0885 18 16 11.0534 2.6961 2.2656 19 6 12.6752 3.2341 1.8358 20 1 12.8124 3.9583 1.0464 21 6 13.7764 2.7273 2.5116 22 7 13.6093 1.8451 3.4741 23 14 15.4958 3.2983 2.0564 24 1 15.5982 4.7666 2.2537 25 1 16.4901 2.6127 2.9204 26 1 15.7659 2.9701 0.6336 27 6 6.2633 3.6840 0.6777 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.6635 2.2778 1.3969 32 1 2.2354 1.9149 2.1492 33 1 1.9877 3.4637 1.3072 34 1 3.6325 3.8452 -0.7737 35 1 5.5398 4.0855 -2.6679 36 1 5.5528 5.3090 -1.3753 37 1 7.9229 3.5596 -2.1757 38 1 7.7082 5.2708 -2.6185 39 1 9.1888 4.9474 -0.6047 40 1 7.7440 5.9301 -0.2592 41 1 10.3750 3.4081 0.0717 42 1 10.2530 4.7276 1.2603 43 1 14.3789 1.4911 3.9467 44 1 5.7536 4.5756 1.0430 45 1 6.1372 2.8701 1.3918 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001745757204.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:44:20 Heat of formation + Delta-G solvation = -102.635318 kcal Electronic energy + Delta-G solvation = -25715.904185 eV Core-core repulsion = 21984.563348 eV Total energy + Delta-G solvation = -3731.340837 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 346.117 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.57275 -40.64924 -38.50014 -35.85662 -34.59531 -34.48476 -33.20706 -31.82893 -30.02450 -29.54616 -27.70617 -26.26245 -25.88041 -23.99017 -22.23676 -21.61885 -20.45373 -19.51015 -18.53653 -18.24559 -17.84239 -17.13134 -16.88623 -16.84518 -16.40128 -16.25097 -15.75303 -15.56282 -15.26763 -15.19161 -14.90752 -14.52382 -14.43538 -14.33120 -14.22712 -13.98069 -13.65646 -13.49811 -13.34498 -13.18108 -12.99098 -12.86483 -12.77153 -12.65489 -12.61367 -12.09488 -12.00989 -11.74179 -11.67411 -11.13377 -11.10529 -10.90581 -10.79724 -10.48214 -10.27365 -9.64699 -8.76064 -8.70155 -8.34678 -6.14592 0.45176 1.21434 1.39273 1.44118 1.46609 1.53744 1.54961 1.63852 1.88270 2.23708 2.27384 2.99103 3.23186 3.52219 3.58749 3.72022 3.79067 3.87621 3.93496 3.95419 4.05475 4.17585 4.23061 4.35130 4.37069 4.39733 4.52822 4.55139 4.59827 4.64701 4.74216 4.77068 4.90211 4.91692 5.03259 5.11668 5.12578 5.19841 5.37130 5.40339 5.54927 6.18733 6.23313 6.40734 7.05547 7.09742 7.14309 8.74505 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.019206 B = 0.002139 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.561326 B =13088.709066 C =14046.309648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 S -0.287 6.287 3 C -0.071 4.071 4 H 0.147 0.853 5 C -0.140 4.140 6 C 0.523 3.477 7 O -0.570 6.570 8 N -0.698 5.698 9 C 0.140 3.860 10 H 0.052 0.948 11 C -0.113 4.113 12 C -0.129 4.129 13 C 0.093 3.907 14 N -0.605 5.605 15 C 0.528 3.472 16 O -0.571 6.571 17 C -0.118 4.118 18 S -0.161 6.161 19 C -0.544 4.544 20 H 0.086 0.914 21 C 0.010 3.990 22 N -0.913 5.913 23 Si 1.002 2.998 24 H -0.259 1.259 25 H -0.280 1.280 26 H -0.261 1.261 27 C 0.106 3.894 28 H 0.108 0.892 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.047 0.953 33 H 0.094 0.906 34 H 0.424 0.576 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.051 0.949 38 H 0.120 0.880 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.108 0.892 42 H 0.113 0.887 43 H 0.271 0.729 44 H 0.097 0.903 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.157 12.416 -16.246 35.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 S -0.062 6.062 3 C -0.203 4.203 4 H 0.165 0.835 5 C -0.199 4.199 6 C 0.308 3.692 7 O -0.447 6.447 8 N -0.352 5.352 9 C 0.033 3.967 10 H 0.070 0.930 11 C -0.150 4.150 12 C -0.167 4.167 13 C -0.028 4.028 14 N -0.340 5.340 15 C 0.315 3.685 16 O -0.449 6.449 17 C -0.270 4.270 18 S 0.066 5.934 19 C -0.692 4.692 20 H 0.104 0.896 21 C -0.194 4.194 22 N -0.550 5.550 23 Si 0.823 3.177 24 H -0.183 1.183 25 H -0.205 1.205 26 H -0.185 1.185 27 C -0.019 4.019 28 H 0.126 0.874 29 H 0.111 0.889 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.066 0.934 33 H 0.113 0.887 34 H 0.263 0.737 35 H 0.111 0.889 36 H 0.123 0.877 37 H 0.070 0.930 38 H 0.138 0.862 39 H 0.107 0.893 40 H 0.121 0.879 41 H 0.126 0.874 42 H 0.132 0.868 43 H 0.080 0.920 44 H 0.115 0.885 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -28.419 9.624 -14.696 33.410 hybrid contribution 0.609 1.547 -0.608 1.771 sum -27.810 11.172 -15.304 33.652 Atomic orbital electron populations 1.23562 0.90729 1.07619 1.06504 1.88060 1.10358 1.09636 1.98110 1.23290 0.94543 0.96635 1.05793 0.83536 1.22028 1.03115 1.01854 0.92928 1.20416 0.90183 0.82595 0.75989 1.90830 1.62062 1.42165 1.49686 1.45631 1.07254 1.14804 1.67503 1.21183 0.80261 1.00098 0.95151 0.92989 1.21792 0.96807 0.98120 0.98323 1.21921 0.94859 1.03171 0.96773 1.22215 1.01640 0.92245 0.86718 1.48045 1.05598 1.43726 1.36595 1.20306 0.87892 0.79673 0.80592 1.90701 1.81909 1.36188 1.36125 1.23341 0.93658 1.05279 1.04673 1.85740 1.02115 1.58088 1.47466 1.23155 0.91503 1.30382 1.24123 0.89589 1.26204 1.04504 0.94527 0.94192 1.70201 1.32792 1.29235 1.22729 0.84955 0.75267 0.78847 0.78609 1.18345 1.20516 1.18544 1.21920 0.80337 1.01528 0.98065 0.87354 0.88875 0.88520 0.88791 0.93387 0.88712 0.73670 0.88921 0.87665 0.93002 0.86220 0.89255 0.87862 0.87389 0.86845 0.92019 0.88530 0.93520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 10.45 113.37 1.19 0.14 16 2 S -0.29 -5.93 21.04 -56.49 -1.19 -7.12 16 3 C -0.07 -1.01 3.18 29.85 0.09 -0.92 16 4 H 0.15 0.89 8.14 -2.39 -0.02 0.87 16 5 C -0.14 -1.47 9.08 71.98 0.65 -0.82 16 6 C 0.52 11.73 6.97 87.66 0.61 12.34 16 7 O -0.57 -20.79 15.71 -3.04 -0.05 -20.83 16 8 N -0.70 -10.09 5.08 -442.16 -2.25 -12.34 16 9 C 0.14 2.72 2.60 45.07 0.12 2.84 16 10 H 0.05 1.51 7.58 -2.39 -0.02 1.49 16 11 C -0.11 -1.07 5.35 30.62 0.16 -0.91 16 12 C -0.13 -1.55 6.08 30.67 0.19 -1.37 16 13 C 0.09 1.60 6.34 86.36 0.55 2.15 16 14 N -0.61 -17.27 2.97 -818.90 -2.43 -19.70 16 15 C 0.53 21.78 7.72 87.66 0.68 22.46 16 16 O -0.57 -30.01 15.28 -3.04 -0.05 -30.06 16 17 C -0.12 -4.97 4.50 71.24 0.32 -4.65 16 18 S -0.16 -9.41 20.57 -56.49 -1.16 -10.57 16 19 C -0.54 -31.72 9.50 67.95 0.65 -31.08 16 20 H 0.09 4.58 7.80 -2.91 -0.02 4.56 16 21 C 0.01 0.59 5.49 84.86 0.47 1.06 16 22 N -0.91 -57.70 13.22 21.65 0.29 -57.42 16 23 Si 1.00 44.20 29.55 68.60 2.03 46.23 16 24 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 25 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 26 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 27 C 0.11 2.73 6.01 86.36 0.52 3.25 16 28 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.09 0.57 7.14 -2.39 -0.02 0.56 16 30 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.09 0.54 6.92 -2.38 -0.02 0.53 16 32 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 34 H 0.42 1.91 8.60 -92.71 -0.80 1.12 16 35 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.09 1.64 5.93 -2.39 -0.01 1.63 16 40 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.11 4.10 7.69 -2.40 -0.02 4.08 16 42 H 0.11 4.18 7.94 -2.39 -0.02 4.16 16 43 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 44 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 45 H 0.05 1.73 7.01 -2.39 -0.02 1.71 16 Total: -1.00 -96.44 392.52 1.57 -94.86 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 0.20 Total: 12.45 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: 6.19 Total: 4.51 kcal Atomic # 7 Polarization: -85.07 SS G_CDS: -4.39 Total: -89.46 kcal Atomic # 8 Polarization: -50.80 SS G_CDS: -0.09 Total: -50.89 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: -15.34 SS G_CDS: -2.35 Total: -17.69 kcal Total: -96.44 1.57 -94.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001745757204.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.770 kcal (2) G-P(sol) polarization free energy of solvation -96.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds