Wall clock time and date at job start Sat Apr 11 2020 07:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 C 1.81402 * 103.00181 * 2 1 4 4 C 1.53002 * 109.47451 * 179.97438 * 3 2 1 5 5 H 1.09011 * 109.46955 * 305.00407 * 4 3 2 6 6 C 1.52995 * 109.47039 * 64.99805 * 4 3 2 7 7 C 1.50695 * 109.47550 * 185.00363 * 4 3 2 8 8 O 1.21287 * 119.99372 * 325.75459 * 7 4 3 9 9 N 1.34768 * 120.00203 * 145.75725 * 7 4 3 10 10 C 1.47065 * 136.06289 * 4.60440 * 9 7 4 11 11 C 1.53752 * 87.88976 * 152.96158 * 10 9 7 12 12 C 1.53000 * 114.08411 * 139.78171 * 11 10 9 13 13 N 1.46501 * 109.47322 * 91.56371 * 12 11 10 14 14 C 1.34772 * 120.00109 * 179.97438 * 13 12 11 15 15 O 1.21285 * 120.00132 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.99865 * 179.97438 * 14 13 12 17 17 S 1.81005 * 109.47191 * 180.02562 * 16 14 13 18 18 C 1.76201 * 100.00051 * 180.02562 * 17 16 14 19 19 H 1.07994 * 119.99805 * 359.97438 * 18 17 16 20 20 C 1.38796 * 119.99926 * 180.02562 * 18 17 16 21 21 N 1.31633 * 119.99882 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00076 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47092 * 59.99794 * 22 20 18 24 24 H 1.48499 * 109.47057 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46904 * 300.00073 * 22 20 18 26 26 C 1.47067 * 136.05527 * 184.97554 * 9 7 4 27 27 H 1.09004 * 109.47030 * 60.00073 * 1 2 3 28 28 H 1.09002 * 109.47083 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47250 * 300.00089 * 1 2 3 30 30 H 1.09003 * 109.47011 * 60.00230 * 3 2 1 31 31 H 1.08995 * 109.47107 * 300.00340 * 3 2 1 32 32 H 1.09001 * 109.47157 * 53.80152 * 6 4 3 33 33 H 1.09001 * 109.47366 * 173.79924 * 6 4 3 34 34 H 1.08998 * 109.47775 * 293.80286 * 6 4 3 35 35 H 1.08997 * 113.46787 * 267.70139 * 10 9 7 36 36 H 1.09004 * 113.46118 * 38.13940 * 10 9 7 37 37 H 1.08991 * 114.58096 * 272.66646 * 11 10 9 38 38 H 1.08999 * 109.47295 * 211.56404 * 12 11 10 39 39 H 1.09000 * 109.47043 * 331.56441 * 12 11 10 40 40 H 0.96995 * 119.99905 * 359.97438 * 13 12 11 41 41 H 1.08999 * 109.47153 * 300.00228 * 16 14 13 42 42 H 1.09000 * 109.47056 * 60.00186 * 16 14 13 43 43 H 0.97000 * 119.99845 * 180.02562 * 21 20 18 44 44 H 1.08998 * 113.47039 * 321.87116 * 26 9 7 45 45 H 1.09005 * 113.46755 * 92.30575 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 1 4.1694 1.3952 0.8427 6 6 4.3183 1.3916 -1.3063 7 6 4.0819 3.4029 0.1246 8 8 3.3671 4.2370 -0.3896 9 7 5.1799 3.7844 0.8066 10 6 6.3007 3.1058 1.4744 11 6 7.1465 4.3615 1.2063 12 6 8.0629 4.7564 2.3661 13 7 9.3724 4.1232 2.1912 14 6 10.3476 4.3302 3.0982 15 8 10.1409 5.0404 4.0594 16 6 11.6944 3.6784 2.9185 17 16 12.7786 4.1457 4.2905 18 6 14.2396 3.2709 3.8376 19 1 14.2549 2.6754 2.9368 20 6 15.3702 3.3462 4.6392 21 7 15.3511 4.0716 5.7374 22 14 16.9187 2.4182 4.1595 23 1 17.3878 2.8908 2.8321 24 1 17.9760 2.6621 5.1733 25 1 16.6235 0.9645 4.0913 26 6 5.7811 5.0626 1.2162 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8031 2.2371 0.8900 31 1 1.8031 2.2371 -0.8899 32 1 3.8117 1.8586 -2.1509 33 1 5.3845 1.6129 -1.3547 34 1 4.1691 0.3125 -1.3448 35 1 6.1256 2.9184 2.5337 36 1 6.6524 2.2221 0.9418 37 1 7.6475 4.3725 0.2384 38 1 8.1824 5.8397 2.3822 39 1 7.6220 4.4254 3.3064 40 1 9.5376 3.5550 1.4227 41 1 11.5746 2.5951 2.9032 42 1 12.1352 4.0086 1.9779 43 1 16.1414 4.1245 6.2974 44 1 5.6899 5.8461 0.4640 45 1 5.4690 5.3911 2.2076 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001745950769.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:44:27 Heat of formation + Delta-G solvation = -44.787877 kcal Electronic energy + Delta-G solvation = -24390.620015 eV Core-core repulsion = 20661.787631 eV Total energy + Delta-G solvation = -3728.832384 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 346.117 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.07409 -39.31441 -38.51405 -34.98685 -34.56809 -32.44726 -31.14417 -29.60093 -29.22222 -27.74756 -26.59052 -26.19721 -25.43586 -23.26022 -21.20754 -20.34770 -19.22904 -18.00879 -17.76699 -16.76453 -16.53308 -16.44925 -16.25448 -15.66668 -15.38744 -15.08433 -14.82085 -14.58013 -14.37080 -14.12319 -13.98629 -13.74045 -13.62837 -13.27342 -13.12800 -13.05814 -12.83924 -12.61722 -12.56070 -12.48155 -11.90557 -11.86986 -11.77210 -11.70919 -11.08330 -11.06659 -11.04936 -10.78543 -10.55864 -10.12731 -9.84654 -9.47969 -9.19093 -9.08545 -8.97286 -8.26786 -8.18064 -6.52509 -6.23441 -3.94439 1.06299 2.03033 2.14709 2.36074 2.96192 3.03833 3.22192 3.25709 3.28483 3.56936 3.87537 3.93106 4.04348 4.18722 4.26306 4.39331 4.56743 4.62607 4.64180 4.70495 4.76328 4.91245 4.95921 4.98811 5.10770 5.11699 5.11969 5.15758 5.19607 5.22802 5.27929 5.39520 5.48548 5.53060 5.64474 5.68325 5.82605 5.85840 6.10452 6.51261 7.21590 7.57257 7.62047 7.66226 8.33024 8.54543 9.21839 10.83895 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.019930 B = 0.001534 C = 0.001469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.615175 B =18253.026017 C =19061.924071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.254 6.254 3 C -0.070 4.070 4 C -0.087 4.087 5 H 0.099 0.901 6 C -0.141 4.141 7 C 0.553 3.447 8 O -0.538 6.538 9 N -0.647 5.647 10 C 0.101 3.899 11 C -0.135 4.135 12 C 0.133 3.867 13 N -0.739 5.739 14 C 0.532 3.468 15 O -0.516 6.516 16 C -0.154 4.154 17 S -0.060 6.060 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.113 3.887 27 H 0.078 0.922 28 H 0.103 0.897 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.114 0.886 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.399 0.601 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.269 0.731 44 H 0.083 0.917 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.120 -6.465 -14.082 31.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.028 6.028 3 C -0.219 4.219 4 C -0.109 4.109 5 H 0.117 0.883 6 C -0.199 4.199 7 C 0.341 3.659 8 O -0.414 6.414 9 N -0.383 5.383 10 C -0.022 4.022 11 C -0.155 4.155 12 C 0.008 3.992 13 N -0.394 5.394 14 C 0.318 3.682 15 O -0.390 6.390 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.010 4.010 27 H 0.097 0.903 28 H 0.121 0.879 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.112 0.888 36 H 0.102 0.898 37 H 0.132 0.868 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.233 0.767 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.102 0.898 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -27.321 -5.706 -12.706 30.666 hybrid contribution 0.425 -0.685 -1.673 1.857 sum -26.896 -6.391 -14.379 31.161 Atomic orbital electron populations 1.23406 0.93915 1.06661 1.05135 1.86818 1.07664 1.10260 1.98085 1.23256 0.97563 0.94768 1.06282 1.20950 0.94827 0.92966 1.02181 0.88291 1.21776 1.00972 1.02311 0.94823 1.20027 0.78028 0.90533 0.77265 1.90723 1.49217 1.54240 1.47267 1.49578 1.23803 1.11230 1.53650 1.23325 0.83014 0.97184 0.98636 1.23283 0.94633 0.96805 1.00761 1.21140 0.82600 0.98737 0.96675 1.45969 1.12472 1.52892 1.28076 1.20320 0.85309 0.80696 0.81859 1.90714 1.81497 1.37129 1.29706 1.23532 0.96164 1.03408 1.07342 1.85405 1.06570 1.65173 1.26213 1.22826 0.98332 1.34803 1.12573 0.90958 1.24985 0.98610 0.95415 0.94497 1.70006 1.29921 1.37609 1.12730 0.86228 0.81081 0.79863 0.78350 1.19942 1.20803 1.19935 1.22958 0.88470 0.88367 1.01203 0.90319 0.87875 0.90400 0.89789 0.88735 0.91511 0.91860 0.90250 0.88814 0.89803 0.86829 0.90712 0.90923 0.76724 0.89176 0.89196 0.92109 0.89813 0.88983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.56 10.76 101.05 1.09 0.52 16 2 S -0.25 -1.77 21.31 -107.50 -2.29 -4.06 16 3 C -0.07 -0.50 4.95 37.16 0.18 -0.32 16 4 C -0.09 -0.62 2.61 -91.78 -0.24 -0.86 16 5 H 0.10 0.62 7.87 -51.92 -0.41 0.21 16 6 C -0.14 -0.90 8.90 37.15 0.33 -0.57 16 7 C 0.55 5.29 7.08 -10.99 -0.08 5.22 16 8 O -0.54 -7.12 17.14 5.55 0.10 -7.03 16 9 N -0.65 -5.06 3.69 -185.08 -0.68 -5.74 16 10 C 0.10 0.56 7.79 -8.39 -0.07 0.50 16 11 C -0.14 -0.80 4.12 -89.97 -0.37 -1.17 16 12 C 0.13 1.18 5.59 -4.04 -0.02 1.15 16 13 N -0.74 -8.14 5.56 -60.29 -0.33 -8.48 16 14 C 0.53 9.07 7.85 -10.99 -0.09 8.99 16 15 O -0.52 -11.03 15.86 5.55 0.09 -10.94 16 16 C -0.15 -2.91 6.16 36.01 0.22 -2.69 16 17 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 18 C -0.54 -14.98 9.50 30.94 0.29 -14.69 16 19 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 20 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -25.78 13.22 55.49 0.73 -25.05 16 22 Si 0.92 21.03 29.55 -169.99 -5.02 16.01 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 C 0.11 0.78 8.19 -8.52 -0.07 0.71 16 27 H 0.08 0.32 8.14 -51.92 -0.42 -0.11 16 28 H 0.10 0.37 8.14 -51.92 -0.42 -0.05 16 29 H 0.08 0.32 8.14 -51.92 -0.42 -0.10 16 30 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 31 H 0.09 0.74 8.01 -51.93 -0.42 0.32 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.48 7.36 -51.93 -0.38 0.09 16 35 H 0.09 0.48 7.87 -51.93 -0.41 0.07 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.68 7.80 -51.93 -0.40 0.28 16 40 H 0.40 3.20 8.47 -40.82 -0.35 2.85 16 41 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 42 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 43 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.09 0.56 8.10 -51.93 -0.42 0.14 16 LS Contribution 406.50 15.07 6.13 6.13 Total: -1.00 -36.38 406.50 -9.82 -46.19 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -7.40 Total: -2.00 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: 1.09 Total: -1.23 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: -0.28 Total: -39.27 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: 0.18 Total: -17.97 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -3.36 SS G_CDS: -4.50 Total: -7.86 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -36.38 -9.82 -46.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001745950769.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.405 kcal (2) G-P(sol) polarization free energy of solvation -36.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds