Wall clock time and date at job start Sat Apr 11 2020 07:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 C 1.81402 * 103.00181 * 2 1 4 4 C 1.53002 * 109.47451 * 179.97438 * 3 2 1 5 5 H 1.09011 * 109.46955 * 305.00407 * 4 3 2 6 6 C 1.52995 * 109.47039 * 64.99805 * 4 3 2 7 7 C 1.50695 * 109.47550 * 185.00363 * 4 3 2 8 8 O 1.21287 * 119.99372 * 325.75459 * 7 4 3 9 9 N 1.34768 * 120.00203 * 145.75725 * 7 4 3 10 10 C 1.47065 * 136.06289 * 4.60440 * 9 7 4 11 11 C 1.53752 * 87.88976 * 152.96158 * 10 9 7 12 12 C 1.53000 * 114.08411 * 139.78171 * 11 10 9 13 13 N 1.46501 * 109.47322 * 91.56371 * 12 11 10 14 14 C 1.34772 * 120.00109 * 179.97438 * 13 12 11 15 15 O 1.21285 * 120.00132 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.99865 * 179.97438 * 14 13 12 17 17 S 1.81005 * 109.47191 * 180.02562 * 16 14 13 18 18 C 1.76201 * 100.00051 * 180.02562 * 17 16 14 19 19 H 1.07994 * 119.99805 * 359.97438 * 18 17 16 20 20 C 1.38796 * 119.99926 * 180.02562 * 18 17 16 21 21 N 1.31633 * 119.99882 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00076 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47092 * 59.99794 * 22 20 18 24 24 H 1.48499 * 109.47057 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46904 * 300.00073 * 22 20 18 26 26 C 1.47067 * 136.05527 * 184.97554 * 9 7 4 27 27 H 1.09004 * 109.47030 * 60.00073 * 1 2 3 28 28 H 1.09002 * 109.47083 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47250 * 300.00089 * 1 2 3 30 30 H 1.09003 * 109.47011 * 60.00230 * 3 2 1 31 31 H 1.08995 * 109.47107 * 300.00340 * 3 2 1 32 32 H 1.09001 * 109.47157 * 53.80152 * 6 4 3 33 33 H 1.09001 * 109.47366 * 173.79924 * 6 4 3 34 34 H 1.08998 * 109.47775 * 293.80286 * 6 4 3 35 35 H 1.08997 * 113.46787 * 267.70139 * 10 9 7 36 36 H 1.09004 * 113.46118 * 38.13940 * 10 9 7 37 37 H 1.08991 * 114.58096 * 272.66646 * 11 10 9 38 38 H 1.08999 * 109.47295 * 211.56404 * 12 11 10 39 39 H 1.09000 * 109.47043 * 331.56441 * 12 11 10 40 40 H 0.96995 * 119.99905 * 359.97438 * 13 12 11 41 41 H 1.08999 * 109.47153 * 300.00228 * 16 14 13 42 42 H 1.09000 * 109.47056 * 60.00186 * 16 14 13 43 43 H 0.97000 * 119.99845 * 180.02562 * 21 20 18 44 44 H 1.08998 * 113.47039 * 321.87116 * 26 9 7 45 45 H 1.09005 * 113.46755 * 92.30575 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 1 4.1694 1.3952 0.8427 6 6 4.3183 1.3916 -1.3063 7 6 4.0819 3.4029 0.1246 8 8 3.3671 4.2370 -0.3896 9 7 5.1799 3.7844 0.8066 10 6 6.3007 3.1058 1.4744 11 6 7.1465 4.3615 1.2063 12 6 8.0629 4.7564 2.3661 13 7 9.3724 4.1232 2.1912 14 6 10.3476 4.3302 3.0982 15 8 10.1409 5.0404 4.0594 16 6 11.6944 3.6784 2.9185 17 16 12.7786 4.1457 4.2905 18 6 14.2396 3.2709 3.8376 19 1 14.2549 2.6754 2.9368 20 6 15.3702 3.3462 4.6392 21 7 15.3511 4.0716 5.7374 22 14 16.9187 2.4182 4.1595 23 1 17.3878 2.8908 2.8321 24 1 17.9760 2.6621 5.1733 25 1 16.6235 0.9645 4.0913 26 6 5.7811 5.0626 1.2162 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8031 2.2371 0.8900 31 1 1.8031 2.2371 -0.8899 32 1 3.8117 1.8586 -2.1509 33 1 5.3845 1.6129 -1.3547 34 1 4.1691 0.3125 -1.3448 35 1 6.1256 2.9184 2.5337 36 1 6.6524 2.2221 0.9418 37 1 7.6475 4.3725 0.2384 38 1 8.1824 5.8397 2.3822 39 1 7.6220 4.4254 3.3064 40 1 9.5376 3.5550 1.4227 41 1 11.5746 2.5951 2.9032 42 1 12.1352 4.0086 1.9779 43 1 16.1414 4.1245 6.2974 44 1 5.6899 5.8461 0.4640 45 1 5.4690 5.3911 2.2076 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001745950769.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:44:26 Heat of formation + Delta-G solvation = -69.868880 kcal Electronic energy + Delta-G solvation = -24391.707609 eV Core-core repulsion = 20661.787631 eV Total energy + Delta-G solvation = -3729.919978 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 346.117 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.72388 -40.48938 -39.34672 -35.69291 -35.58998 -34.55143 -32.12357 -30.45931 -29.94785 -28.26806 -27.70760 -27.12191 -26.89083 -23.90505 -21.96213 -21.49614 -19.86571 -19.74947 -18.51124 -17.75190 -17.55090 -17.17246 -17.00003 -16.84763 -16.53242 -16.45362 -15.93316 -15.64976 -15.35647 -14.93557 -14.65159 -14.54644 -14.39186 -14.36197 -14.19451 -13.82051 -13.58533 -13.54724 -13.35820 -13.13467 -13.08182 -12.95458 -12.83109 -12.60862 -12.44778 -12.39291 -12.27126 -11.73285 -11.65335 -11.11662 -11.09924 -10.92282 -10.78216 -10.23090 -10.04293 -9.83316 -8.71084 -8.62484 -8.31597 -6.09077 0.55834 1.30582 1.45057 1.46042 1.50099 1.55875 1.59548 1.68624 1.77271 2.28817 2.34293 3.02687 3.19685 3.36421 3.38239 3.50023 3.71247 3.81855 3.96802 4.10240 4.16922 4.21532 4.29301 4.32883 4.36690 4.39837 4.41334 4.54044 4.57513 4.58482 4.59204 4.70169 4.77163 4.79443 4.84514 4.86781 4.94870 5.18598 5.21531 5.44866 5.50034 6.22624 6.56428 6.60407 6.96730 7.10015 7.32196 8.77180 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.019930 B = 0.001534 C = 0.001469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.615175 B =18253.026017 C =19061.924071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.276 6.276 3 C -0.064 4.064 4 C -0.081 4.081 5 H 0.112 0.888 6 C -0.136 4.136 7 C 0.549 3.451 8 O -0.583 6.583 9 N -0.649 5.649 10 C 0.103 3.897 11 C -0.115 4.115 12 C 0.134 3.866 13 N -0.709 5.709 14 C 0.534 3.466 15 O -0.567 6.567 16 C -0.130 4.130 17 S -0.154 6.154 18 C -0.547 4.547 19 H 0.084 0.916 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.996 3.004 23 H -0.263 1.263 24 H -0.281 1.281 25 H -0.262 1.262 26 C 0.106 3.894 27 H 0.084 0.916 28 H 0.115 0.885 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.128 0.872 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.418 0.582 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.270 0.730 44 H 0.078 0.922 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.179 -8.477 -15.836 32.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 S -0.051 6.051 3 C -0.212 4.212 4 C -0.103 4.103 5 H 0.130 0.870 6 C -0.194 4.194 7 C 0.339 3.661 8 O -0.464 6.464 9 N -0.383 5.383 10 C -0.019 4.019 11 C -0.134 4.134 12 C 0.010 3.990 13 N -0.364 5.364 14 C 0.320 3.680 15 O -0.445 6.445 16 C -0.282 4.282 17 S 0.073 5.927 18 C -0.695 4.695 19 H 0.102 0.898 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.818 3.182 23 H -0.187 1.187 24 H -0.206 1.206 25 H -0.186 1.186 26 C -0.017 4.017 27 H 0.103 0.897 28 H 0.133 0.867 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.146 0.854 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.256 0.744 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.079 0.921 44 H 0.096 0.904 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -27.392 -7.754 -14.502 31.949 hybrid contribution 0.294 -0.041 -1.179 1.216 sum -27.098 -7.795 -15.681 32.264 Atomic orbital electron populations 1.23484 0.91760 1.07640 1.05740 1.86832 1.10167 1.09963 1.98121 1.23158 0.97743 0.94812 1.05518 1.20953 0.94814 0.91458 1.03085 0.87016 1.21740 1.01309 1.02393 0.93916 1.20431 0.77843 0.91113 0.76762 1.90698 1.50824 1.55521 1.49320 1.49653 1.23609 1.12128 1.52908 1.23490 0.81598 0.97531 0.99280 1.23093 0.93457 0.96804 1.00075 1.21234 0.81581 0.98185 0.97977 1.45662 1.11908 1.51842 1.26974 1.20007 0.85603 0.80211 0.82187 1.90707 1.82225 1.39510 1.32086 1.23383 0.95663 1.04808 1.04304 1.85586 1.09169 1.66444 1.31534 1.23188 0.98672 1.34681 1.12918 0.89820 1.26098 1.02431 0.96262 0.94270 1.70178 1.30986 1.39451 1.14176 0.85033 0.76200 0.78682 0.78267 1.18718 1.20586 1.18623 1.23080 0.88941 0.88236 1.01458 0.89743 0.86669 0.89823 0.90254 0.89804 0.92550 0.90932 0.89728 0.87987 0.87690 0.85395 0.91495 0.91042 0.74413 0.86993 0.87229 0.92070 0.90388 0.88288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 10.76 113.37 1.22 0.29 16 2 S -0.28 -3.55 21.31 -56.49 -1.20 -4.76 16 3 C -0.06 -0.89 4.95 71.98 0.36 -0.53 16 4 C -0.08 -1.05 2.61 -11.54 -0.03 -1.08 16 5 H 0.11 1.16 7.87 -2.38 -0.02 1.14 16 6 C -0.14 -1.52 8.90 71.98 0.64 -0.88 16 7 C 0.55 10.01 7.08 87.66 0.62 10.63 16 8 O -0.58 -15.57 17.14 -3.05 -0.05 -15.62 16 9 N -0.65 -8.94 3.69 -857.87 -3.16 -12.10 16 10 C 0.10 0.82 7.79 83.26 0.65 1.46 16 11 C -0.12 -1.03 4.12 -10.37 -0.04 -1.07 16 12 C 0.13 2.06 5.59 86.38 0.48 2.55 16 13 N -0.71 -13.62 5.56 -463.06 -2.57 -16.20 16 14 C 0.53 17.47 7.85 87.66 0.69 18.16 16 15 O -0.57 -24.32 15.86 -3.05 -0.05 -24.37 16 16 C -0.13 -4.74 6.16 71.24 0.44 -4.30 16 17 S -0.15 -8.29 20.57 -56.49 -1.16 -9.45 16 18 C -0.55 -30.40 9.50 67.95 0.65 -29.75 16 19 H 0.08 4.28 7.80 -2.91 -0.02 4.25 16 20 C 0.01 0.79 5.49 84.86 0.47 1.26 16 21 N -0.91 -55.19 13.22 21.65 0.29 -54.90 16 22 Si 1.00 42.63 29.55 68.60 2.03 44.66 16 23 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 24 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 25 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 26 C 0.11 1.28 8.19 83.17 0.68 1.96 16 27 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.08 1.33 8.01 -2.39 -0.02 1.31 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.08 0.87 7.36 -2.39 -0.02 0.86 16 35 H 0.10 0.72 7.87 -2.39 -0.02 0.70 16 36 H 0.10 0.47 8.14 -2.38 -0.02 0.45 16 37 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.07 1.19 7.80 -2.39 -0.02 1.18 16 40 H 0.42 4.98 8.47 -92.71 -0.79 4.19 16 41 H 0.11 3.58 8.14 -2.40 -0.02 3.56 16 42 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 43 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 44 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.10 1.07 8.10 -2.38 -0.02 1.05 16 Total: -1.00 -81.99 406.50 1.12 -80.87 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.20 Total: 13.18 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: 6.81 Total: -1.31 kcal Atomic # 7 Polarization: -77.75 SS G_CDS: -5.45 Total: -83.20 kcal Atomic # 8 Polarization: -39.88 SS G_CDS: -0.10 Total: -39.98 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 16 Polarization: -11.84 SS G_CDS: -2.37 Total: -14.21 kcal Total: -81.99 1.12 -80.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001745950769.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.998 kcal (2) G-P(sol) polarization free energy of solvation -81.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds