Wall clock time and date at job start Sat Apr 11 2020 07:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 119.99832 * 2 1 4 4 H 1.48500 * 109.47586 * 270.00222 * 3 2 1 5 5 H 1.48510 * 109.47043 * 30.00575 * 3 2 1 6 6 H 1.48504 * 109.47009 * 149.99709 * 3 2 1 7 7 C 1.38814 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99590 * 179.97438 * 7 2 1 9 9 N 1.36928 * 120.00173 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00206 * 180.02562 * 9 7 2 11 11 H 1.09006 * 109.47406 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47099 * 300.00457 * 10 9 7 13 13 C 1.53004 * 109.47099 * 294.99538 * 12 10 9 14 14 N 1.46496 * 109.46877 * 179.97438 * 13 12 10 15 15 C 1.34778 * 119.99538 * 180.02562 * 14 13 12 16 16 O 1.21623 * 120.00202 * 359.97438 * 15 14 13 17 17 C 1.47169 * 119.99668 * 180.02562 * 15 14 13 18 18 C 1.38244 * 128.47483 * 180.02562 * 17 15 14 19 19 N 1.31239 * 111.89025 * 179.97438 * 18 17 15 20 20 N 1.27337 * 120.04056 * 359.97438 * 19 18 17 21 21 S 1.56641 * 109.73392 * 359.69472 * 20 19 18 22 22 C 1.52997 * 109.46978 * 60.00233 * 10 9 7 23 23 C 1.50706 * 109.47198 * 64.99974 * 22 10 9 24 24 C 1.38238 * 119.99775 * 90.00136 * 23 22 10 25 25 C 1.38235 * 119.99712 * 179.97438 * 24 23 22 26 26 C 1.38234 * 120.00220 * 359.97124 * 25 24 23 27 27 C 1.38233 * 120.00037 * 0.28719 * 26 25 24 28 28 C 1.38233 * 120.00212 * 270.02182 * 23 22 10 29 29 H 0.96991 * 119.99810 * 359.97438 * 1 2 3 30 30 H 0.97003 * 120.00366 * 0.02562 * 9 7 2 31 31 H 1.08995 * 109.46897 * 54.99919 * 12 10 9 32 32 H 1.09002 * 109.47022 * 174.99749 * 12 10 9 33 33 H 1.08998 * 109.47299 * 300.00412 * 13 12 10 34 34 H 1.09004 * 109.46774 * 59.99731 * 13 12 10 35 35 H 0.96997 * 120.00440 * 0.02562 * 14 13 12 36 36 H 1.08004 * 124.05836 * 0.02562 * 18 17 15 37 37 H 1.09003 * 109.47286 * 305.00325 * 22 10 9 38 38 H 1.09002 * 109.47284 * 184.99747 * 22 10 9 39 39 H 1.08005 * 120.00068 * 359.97438 * 24 23 22 40 40 H 1.07999 * 119.99770 * 179.97438 * 25 24 23 41 41 H 1.08002 * 119.99744 * 180.02562 * 26 25 24 42 42 H 1.07998 * 120.00395 * 179.72811 * 27 26 25 43 43 H 1.07999 * 119.99956 * 0.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4476 2.6527 0.7002 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0904 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 1.3499 -4.4853 -0.0010 12 6 2.9379 -3.7377 -1.2497 13 6 2.0513 -3.7824 -2.4959 14 7 2.8936 -3.8593 -3.6920 15 6 2.3264 -3.9086 -4.9136 16 8 1.1152 -3.8897 -5.0229 17 6 3.1726 -3.9865 -6.1151 18 6 2.7819 -4.0441 -7.4400 19 7 3.8115 -4.1059 -8.2514 20 7 4.9948 -4.1067 -7.7810 21 16 4.9426 -4.0196 -6.2179 22 6 2.9377 -3.7378 1.2487 23 6 2.0643 -3.7817 2.4761 24 6 1.6392 -4.9972 2.9787 25 6 0.8385 -5.0375 4.1048 26 6 0.4633 -3.8623 4.7286 27 6 0.8841 -2.6466 4.2229 28 6 1.6879 -2.6064 3.0990 29 1 -0.4849 0.8400 0.0004 30 1 0.3557 -2.3881 -0.0005 31 1 3.5853 -2.8621 -1.2955 32 1 3.5488 -4.6394 -1.2060 33 1 1.4038 -4.6580 -2.4500 34 1 1.4403 -2.8807 -2.5395 35 1 3.8596 -3.8748 -3.6048 36 1 1.7529 -4.0382 -7.7680 37 1 3.5852 -2.8621 1.2947 38 1 3.5486 -4.6395 1.2051 39 1 1.9326 -5.9154 2.4916 40 1 0.5060 -5.9871 4.4973 41 1 -0.1619 -3.8939 5.6087 42 1 0.5874 -1.7282 4.7076 43 1 2.0194 -1.6568 2.7058 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755724050.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:45:01 Heat of formation + Delta-G solvation = 68.651453 kcal Electronic energy + Delta-G solvation = -26816.400517 eV Core-core repulsion = 22989.336031 eV Total energy + Delta-G solvation = -3827.064486 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 346.120 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -41.05713 -39.53385 -38.84395 -36.67103 -34.64289 -32.56889 -32.38220 -31.10491 -30.33414 -29.39952 -27.89265 -26.86712 -24.32206 -23.75184 -22.30587 -22.00137 -20.92866 -20.64225 -19.69545 -19.27298 -17.67009 -17.06489 -16.20599 -16.16621 -16.04703 -15.49978 -15.00112 -14.94548 -14.62835 -14.38769 -14.21208 -13.98490 -13.33846 -13.09088 -12.98368 -12.92809 -12.86212 -12.44744 -12.24930 -11.74016 -11.52610 -11.39957 -11.09268 -10.93756 -10.86763 -10.57825 -10.56554 -10.41970 -10.39537 -10.34665 -10.18808 -10.09874 -9.84988 -9.63421 -9.05045 -8.95913 -8.37469 -8.10634 -7.02144 -5.82132 -3.11259 -0.51954 0.53777 1.20734 1.73734 1.88564 1.97147 2.88146 2.95918 3.36338 3.41470 3.45070 3.77097 4.33222 4.44947 4.52557 4.58837 5.23281 5.28760 5.32901 5.35916 5.39499 5.47852 5.54023 5.63466 5.74690 5.88191 5.97514 6.04162 6.08025 6.18583 6.30355 6.33979 6.37614 6.55422 6.61305 6.64740 6.71266 6.86790 6.94582 7.10626 7.28552 7.33392 7.40772 7.59587 7.62441 7.99636 8.34555 9.46854 10.03744 10.38533 11.39464 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.011475 B = 0.002722 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.568033 B =10284.904828 C =11760.341252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.005 4.005 3 Si 0.894 3.106 4 H -0.292 1.292 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.236 4.236 8 H 0.069 0.931 9 N -0.715 5.715 10 C 0.187 3.813 11 H 0.056 0.944 12 C -0.141 4.141 13 C 0.126 3.874 14 N -0.713 5.713 15 C 0.594 3.406 16 O -0.513 6.513 17 C -0.276 4.276 18 C 0.069 3.931 19 N -0.251 5.251 20 N -0.260 5.260 21 S 0.417 5.583 22 C -0.093 4.093 23 C -0.058 4.058 24 C -0.130 4.130 25 C -0.133 4.133 26 C -0.136 4.136 27 C -0.124 4.124 28 C -0.079 4.079 29 H 0.255 0.745 30 H 0.386 0.614 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.093 0.907 35 H 0.396 0.604 36 H 0.217 0.783 37 H 0.075 0.925 38 H 0.054 0.946 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.537 -11.378 -2.643 14.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.202 4.202 3 Si 0.726 3.274 4 H -0.219 1.219 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.367 4.367 8 H 0.087 0.913 9 N -0.355 5.355 10 C 0.075 3.925 11 H 0.074 0.926 12 C -0.181 4.181 13 C 0.004 3.996 14 N -0.364 5.364 15 C 0.376 3.624 16 O -0.389 6.389 17 C -0.417 4.417 18 C -0.097 4.097 19 N -0.116 5.116 20 N -0.242 5.242 21 S 0.551 5.449 22 C -0.133 4.133 23 C -0.058 4.058 24 C -0.148 4.148 25 C -0.151 4.151 26 C -0.154 4.154 27 C -0.142 4.142 28 C -0.097 4.097 29 H 0.065 0.935 30 H 0.220 0.780 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.111 0.889 35 H 0.229 0.771 36 H 0.233 0.767 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.131 0.869 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 9.604 -11.265 -3.297 15.166 hybrid contribution -0.955 1.142 0.179 1.499 sum 8.649 -10.122 -3.118 13.675 Atomic orbital electron populations 1.69649 1.04978 1.25571 1.56900 1.24674 0.95288 0.97321 1.02954 0.86401 0.78785 0.84718 0.77505 1.21910 1.21883 1.20819 1.19003 0.90769 0.83900 1.43073 0.91274 1.42378 1.05688 0.99540 1.87891 1.20050 0.92432 0.90120 0.89929 0.92573 1.22303 0.99114 1.01302 0.95416 1.21534 0.93224 1.03438 0.81417 1.46024 1.10535 1.73848 1.05980 1.16481 0.86678 0.77857 0.81387 1.90884 1.12880 1.49284 1.85846 1.28234 0.99054 1.14586 0.99821 1.24489 1.01128 0.97310 0.86809 1.70692 0.93169 1.15528 1.32210 1.78876 1.18166 1.19992 1.07126 1.82591 1.01765 1.50348 1.10163 1.21146 0.97306 1.01292 0.93563 1.19788 0.97708 0.92578 0.95702 1.20962 0.99585 0.97267 0.96963 1.20929 0.99688 0.97574 0.96912 1.20983 1.01186 0.92950 1.00299 1.21150 0.98563 0.97284 0.97210 1.21287 0.95942 0.99039 0.93443 0.93518 0.78023 0.90682 0.92883 0.91923 0.88850 0.77077 0.76708 0.90656 0.92701 0.87043 0.87197 0.87239 0.86897 0.84841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.86 13.06 55.49 0.72 -25.14 16 2 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 3 Si 0.89 20.87 29.55 -169.99 -5.02 15.84 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.24 -5.54 7.87 -15.06 -0.12 -5.65 16 8 H 0.07 1.58 6.64 -52.48 -0.35 1.23 16 9 N -0.72 -15.06 4.13 -53.43 -0.22 -15.28 16 10 C 0.19 3.04 2.67 -67.93 -0.18 2.86 16 11 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 12 C -0.14 -1.96 4.73 -26.73 -0.13 -2.08 16 13 C 0.13 1.87 5.56 -4.04 -0.02 1.85 16 14 N -0.71 -8.85 5.55 -61.47 -0.34 -9.19 16 15 C 0.59 8.18 7.80 -12.63 -0.10 8.08 16 16 O -0.51 -9.05 16.98 5.26 0.09 -8.96 16 17 C -0.28 -3.06 6.81 -35.96 -0.25 -3.31 16 18 C 0.07 0.75 11.55 -17.80 -0.21 0.55 16 19 N -0.25 -3.01 11.54 30.36 0.35 -2.66 16 20 N -0.26 -2.98 12.51 60.35 0.75 -2.22 16 21 S 0.42 3.64 23.05 -107.50 -2.48 1.16 16 22 C -0.09 -1.44 4.75 -27.88 -0.13 -1.57 16 23 C -0.06 -0.95 4.95 -104.62 -0.52 -1.47 16 24 C -0.13 -1.92 9.70 -39.58 -0.38 -2.30 16 25 C -0.13 -1.89 10.05 -39.58 -0.40 -2.29 16 26 C -0.14 -2.02 10.05 -39.58 -0.40 -2.42 16 27 C -0.12 -2.06 10.05 -39.58 -0.40 -2.46 16 28 C -0.08 -1.44 9.31 -39.58 -0.37 -1.81 16 29 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.39 9.28 8.03 -40.82 -0.33 8.95 16 31 H 0.07 1.13 7.11 -51.93 -0.37 0.76 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.09 1.79 7.75 -51.93 -0.40 1.38 16 35 H 0.40 3.70 7.90 -40.82 -0.32 3.38 16 36 H 0.22 1.91 8.06 -52.48 -0.42 1.49 16 37 H 0.07 1.26 7.05 -51.93 -0.37 0.90 16 38 H 0.05 0.70 8.09 -51.93 -0.42 0.28 16 39 H 0.11 1.40 8.06 -52.48 -0.42 0.97 16 40 H 0.11 1.28 8.06 -52.49 -0.42 0.85 16 41 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 42 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 43 H 0.13 2.72 7.36 -52.49 -0.39 2.34 16 LS Contribution 382.01 15.07 5.76 5.76 Total: -1.00 -29.88 382.01 -9.54 -39.42 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -5.46 Total: 13.53 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -3.69 Total: -12.26 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: 1.27 Total: -54.49 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 3.64 SS G_CDS: -2.48 Total: 1.16 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.88 -9.54 -39.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755724050.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.070 kcal (2) G-P(sol) polarization free energy of solvation -29.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds