Wall clock time and date at job start Sat Apr 11 2020 07:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 119.99832 * 2 1 4 4 H 1.48500 * 109.47586 * 270.00222 * 3 2 1 5 5 H 1.48510 * 109.47043 * 30.00575 * 3 2 1 6 6 H 1.48504 * 109.47009 * 149.99709 * 3 2 1 7 7 C 1.38814 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99590 * 179.97438 * 7 2 1 9 9 N 1.36928 * 120.00173 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00206 * 180.02562 * 9 7 2 11 11 H 1.09006 * 109.47406 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47099 * 300.00457 * 10 9 7 13 13 C 1.53004 * 109.47099 * 294.99538 * 12 10 9 14 14 N 1.46496 * 109.46877 * 179.97438 * 13 12 10 15 15 C 1.34778 * 119.99538 * 180.02562 * 14 13 12 16 16 O 1.21623 * 120.00202 * 359.97438 * 15 14 13 17 17 C 1.47169 * 119.99668 * 180.02562 * 15 14 13 18 18 C 1.38244 * 128.47483 * 180.02562 * 17 15 14 19 19 N 1.31239 * 111.89025 * 179.97438 * 18 17 15 20 20 N 1.27337 * 120.04056 * 359.97438 * 19 18 17 21 21 S 1.56641 * 109.73392 * 359.69472 * 20 19 18 22 22 C 1.52997 * 109.46978 * 60.00233 * 10 9 7 23 23 C 1.50706 * 109.47198 * 64.99974 * 22 10 9 24 24 C 1.38238 * 119.99775 * 90.00136 * 23 22 10 25 25 C 1.38235 * 119.99712 * 179.97438 * 24 23 22 26 26 C 1.38234 * 120.00220 * 359.97124 * 25 24 23 27 27 C 1.38233 * 120.00037 * 0.28719 * 26 25 24 28 28 C 1.38233 * 120.00212 * 270.02182 * 23 22 10 29 29 H 0.96991 * 119.99810 * 359.97438 * 1 2 3 30 30 H 0.97003 * 120.00366 * 0.02562 * 9 7 2 31 31 H 1.08995 * 109.46897 * 54.99919 * 12 10 9 32 32 H 1.09002 * 109.47022 * 174.99749 * 12 10 9 33 33 H 1.08998 * 109.47299 * 300.00412 * 13 12 10 34 34 H 1.09004 * 109.46774 * 59.99731 * 13 12 10 35 35 H 0.96997 * 120.00440 * 0.02562 * 14 13 12 36 36 H 1.08004 * 124.05836 * 0.02562 * 18 17 15 37 37 H 1.09003 * 109.47286 * 305.00325 * 22 10 9 38 38 H 1.09002 * 109.47284 * 184.99747 * 22 10 9 39 39 H 1.08005 * 120.00068 * 359.97438 * 24 23 22 40 40 H 1.07999 * 119.99770 * 179.97438 * 25 24 23 41 41 H 1.08002 * 119.99744 * 180.02562 * 26 25 24 42 42 H 1.07998 * 120.00395 * 179.72811 * 27 26 25 43 43 H 1.07999 * 119.99956 * 0.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4476 2.6527 0.7002 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0904 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 1.3499 -4.4853 -0.0010 12 6 2.9379 -3.7377 -1.2497 13 6 2.0513 -3.7824 -2.4959 14 7 2.8936 -3.8593 -3.6920 15 6 2.3264 -3.9086 -4.9136 16 8 1.1152 -3.8897 -5.0229 17 6 3.1726 -3.9865 -6.1151 18 6 2.7819 -4.0441 -7.4400 19 7 3.8115 -4.1059 -8.2514 20 7 4.9948 -4.1067 -7.7810 21 16 4.9426 -4.0196 -6.2179 22 6 2.9377 -3.7378 1.2487 23 6 2.0643 -3.7817 2.4761 24 6 1.6392 -4.9972 2.9787 25 6 0.8385 -5.0375 4.1048 26 6 0.4633 -3.8623 4.7286 27 6 0.8841 -2.6466 4.2229 28 6 1.6879 -2.6064 3.0990 29 1 -0.4849 0.8400 0.0004 30 1 0.3557 -2.3881 -0.0005 31 1 3.5853 -2.8621 -1.2955 32 1 3.5488 -4.6394 -1.2060 33 1 1.4038 -4.6580 -2.4500 34 1 1.4403 -2.8807 -2.5395 35 1 3.8596 -3.8748 -3.6048 36 1 1.7529 -4.0382 -7.7680 37 1 3.5852 -2.8621 1.2947 38 1 3.5486 -4.6395 1.2051 39 1 1.9326 -5.9154 2.4916 40 1 0.5060 -5.9871 4.4973 41 1 -0.1619 -3.8939 5.6087 42 1 0.5874 -1.7282 4.7076 43 1 2.0194 -1.6568 2.7058 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755724050.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:45:00 Heat of formation + Delta-G solvation = 49.463635 kcal Electronic energy + Delta-G solvation = -26817.232563 eV Core-core repulsion = 22989.336031 eV Total energy + Delta-G solvation = -3827.896532 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 346.120 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.92709 -40.65947 -40.07060 -38.03321 -35.92361 -34.23467 -33.32652 -32.37513 -31.55081 -30.90098 -29.02052 -27.99550 -25.99152 -24.96058 -23.38766 -23.22322 -22.11088 -21.71837 -20.99532 -20.23891 -19.02795 -18.41864 -17.39943 -17.21933 -17.11504 -16.88335 -16.23193 -15.95192 -15.88307 -15.79563 -15.44256 -15.26275 -15.01115 -14.43486 -14.25348 -14.07580 -13.85584 -13.76524 -13.08456 -13.06211 -12.98946 -12.84422 -12.71732 -12.45173 -12.31390 -12.14385 -11.70790 -11.65546 -11.56582 -11.48239 -11.27233 -11.19832 -11.19273 -10.93373 -10.80063 -10.17024 -9.60660 -9.36925 -8.81028 -7.80201 -5.04321 -1.37850 -0.26962 0.40014 0.67570 0.74318 0.85723 1.47296 1.49200 1.55208 1.83157 1.92093 2.63357 2.93449 3.10405 3.54881 3.57762 3.68646 3.98156 4.03502 4.19975 4.24838 4.33453 4.43883 4.47631 4.55966 4.64223 4.71756 4.82299 4.87055 4.91740 5.01680 5.13936 5.17310 5.28413 5.40222 5.41675 5.48964 5.57376 5.69049 5.76103 5.84700 6.07424 6.30418 6.37391 6.40570 6.54234 6.97171 7.48244 8.25544 8.47064 9.43556 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.011475 B = 0.002722 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.568033 B =10284.904828 C =11760.341252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.072 4.072 3 Si 0.942 3.058 4 H -0.298 1.298 5 H -0.309 1.309 6 H -0.268 1.268 7 C -0.194 4.194 8 H 0.080 0.920 9 N -0.723 5.723 10 C 0.181 3.819 11 H 0.066 0.934 12 C -0.129 4.129 13 C 0.135 3.865 14 N -0.701 5.701 15 C 0.597 3.403 16 O -0.560 6.560 17 C -0.302 4.302 18 C 0.074 3.926 19 N -0.275 5.275 20 N -0.288 5.288 21 S 0.514 5.486 22 C -0.085 4.085 23 C -0.071 4.071 24 C -0.129 4.129 25 C -0.130 4.130 26 C -0.138 4.138 27 C -0.144 4.144 28 C -0.108 4.108 29 H 0.241 0.759 30 H 0.368 0.632 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.045 0.955 35 H 0.413 0.587 36 H 0.227 0.773 37 H 0.057 0.943 38 H 0.094 0.906 39 H 0.143 0.857 40 H 0.144 0.856 41 H 0.134 0.866 42 H 0.111 0.889 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.051 -14.411 -2.177 18.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.264 4.264 3 Si 0.774 3.226 4 H -0.227 1.227 5 H -0.237 1.237 6 H -0.193 1.193 7 C -0.327 4.327 8 H 0.098 0.902 9 N -0.360 5.360 10 C 0.071 3.929 11 H 0.084 0.916 12 C -0.168 4.168 13 C 0.012 3.988 14 N -0.353 5.353 15 C 0.380 3.620 16 O -0.439 6.439 17 C -0.443 4.443 18 C -0.093 4.093 19 N -0.138 5.138 20 N -0.269 5.269 21 S 0.648 5.352 22 C -0.124 4.124 23 C -0.072 4.072 24 C -0.146 4.146 25 C -0.148 4.148 26 C -0.156 4.156 27 C -0.162 4.162 28 C -0.126 4.126 29 H 0.050 0.950 30 H 0.199 0.801 31 H 0.084 0.916 32 H 0.117 0.883 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.250 0.750 36 H 0.243 0.757 37 H 0.075 0.925 38 H 0.112 0.888 39 H 0.161 0.839 40 H 0.162 0.838 41 H 0.152 0.848 42 H 0.129 0.871 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.237 -14.341 -2.829 19.063 hybrid contribution -1.627 1.926 0.120 2.524 sum 10.610 -12.415 -2.709 16.554 Atomic orbital electron populations 1.69794 1.06329 1.24882 1.60915 1.25209 0.95741 0.99864 1.05585 0.85591 0.78178 0.81989 0.76795 1.22665 1.23711 1.19252 1.19285 0.91109 0.84453 1.37814 0.90228 1.42526 1.05032 1.00821 1.87638 1.20359 0.92987 0.87982 0.91572 0.91611 1.22167 0.98405 1.03107 0.93142 1.21237 0.93435 1.01213 0.82873 1.45816 1.11252 1.73197 1.05021 1.16727 0.86330 0.76723 0.82176 1.90861 1.15058 1.51395 1.86592 1.27957 1.00937 1.16625 0.98807 1.24724 1.01622 0.96219 0.86765 1.70772 0.93300 1.16889 1.32802 1.78631 1.18397 1.20561 1.09331 1.82187 0.98507 1.46968 1.07501 1.21069 0.96835 1.02339 0.92200 1.19961 0.98267 0.92726 0.96196 1.21309 0.98864 0.97487 0.96969 1.21378 0.98505 0.98640 0.96298 1.21298 1.00951 0.92394 1.00994 1.21290 0.99060 0.98515 0.97324 1.21140 0.97983 0.98462 0.95019 0.94962 0.80097 0.91613 0.88293 0.91708 0.93699 0.75010 0.75699 0.92464 0.88808 0.83949 0.83831 0.84775 0.87060 0.88411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.04 13.06 21.65 0.28 -56.76 16 2 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 3 Si 0.94 44.38 29.55 68.60 2.03 46.41 16 4 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 5 H -0.31 -15.31 7.11 99.48 0.71 -14.60 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.19 -9.24 7.87 84.04 0.66 -8.58 16 8 H 0.08 3.59 6.64 -2.91 -0.02 3.57 16 9 N -0.72 -30.80 4.13 -322.94 -1.33 -32.14 16 10 C 0.18 5.55 2.67 44.99 0.12 5.67 16 11 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 12 C -0.13 -3.19 4.73 30.60 0.14 -3.04 16 13 C 0.14 3.88 5.56 86.38 0.48 4.36 16 14 N -0.70 -16.11 5.55 -466.63 -2.59 -18.70 16 15 C 0.60 15.95 7.80 86.59 0.68 16.62 16 16 O -0.56 -20.07 16.98 -4.10 -0.07 -20.14 16 17 C -0.30 -6.25 6.81 24.62 0.17 -6.09 16 18 C 0.07 1.55 11.55 84.78 0.98 2.53 16 19 N -0.27 -6.25 11.54 -57.87 -0.67 -6.91 16 20 N -0.29 -6.00 12.51 37.02 0.46 -5.53 16 21 S 0.51 7.48 23.05 -56.49 -1.30 6.18 16 22 C -0.09 -2.40 4.75 29.85 0.14 -2.26 16 23 C -0.07 -2.25 4.95 -19.86 -0.10 -2.34 16 24 C -0.13 -3.35 9.70 22.27 0.22 -3.13 16 25 C -0.13 -3.25 10.05 22.27 0.22 -3.03 16 26 C -0.14 -3.85 10.05 22.27 0.22 -3.62 16 27 C -0.14 -4.84 10.05 22.27 0.22 -4.62 16 28 C -0.11 -4.00 9.31 22.27 0.21 -3.79 16 29 H 0.24 14.30 8.31 -92.72 -0.77 13.53 16 30 H 0.37 18.35 8.03 -92.71 -0.74 17.60 16 31 H 0.07 1.79 7.11 -2.39 -0.02 1.78 16 32 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.04 1.75 7.75 -2.38 -0.02 1.73 16 35 H 0.41 6.38 7.90 -92.71 -0.73 5.65 16 36 H 0.23 3.94 8.06 -2.91 -0.02 3.92 16 37 H 0.06 1.82 7.05 -2.39 -0.02 1.80 16 38 H 0.09 1.93 8.09 -2.39 -0.02 1.91 16 39 H 0.14 2.81 8.06 -2.91 -0.02 2.78 16 40 H 0.14 2.62 8.06 -2.91 -0.02 2.59 16 41 H 0.13 2.99 8.06 -2.91 -0.02 2.96 16 42 H 0.11 3.60 8.06 -2.91 -0.02 3.58 16 43 H 0.10 4.24 7.36 -2.91 -0.02 4.22 16 Total: -1.00 -69.66 382.01 1.23 -68.44 By element: Atomic # 1 Polarization: 34.28 SS G_CDS: -0.41 Total: 33.87 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: 4.83 Total: -14.72 kcal Atomic # 7 Polarization: -116.20 SS G_CDS: -3.85 Total: -120.04 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.07 Total: -20.14 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: 7.48 SS G_CDS: -1.30 Total: 6.18 kcal Total: -69.66 1.23 -68.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755724050.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.899 kcal (2) G-P(sol) polarization free energy of solvation -69.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds