Wall clock time and date at job start Sat Apr 11 2020 07:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81393 * 109.47336 * 2 1 4 4 C 1.81401 * 103.00369 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47450 * 180.02562 * 4 3 2 6 6 C 1.50704 * 109.47235 * 179.97438 * 5 4 3 7 7 O 1.21281 * 120.00002 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00164 * 179.97438 * 6 5 4 9 9 C 1.47068 * 136.05342 * 354.65000 * 8 6 5 10 10 C 1.53240 * 88.08147 * 207.19951 * 9 8 6 11 11 C 1.47061 * 136.05878 * 175.01089 * 8 6 5 12 12 H 1.08995 * 113.46945 * 267.68134 * 11 8 6 13 13 C 1.52996 * 113.46660 * 38.06831 * 11 8 6 14 14 N 1.46501 * 109.47237 * 184.10391 * 13 11 8 15 15 C 1.34776 * 120.00126 * 184.98113 * 14 13 11 16 16 O 1.21284 * 119.99947 * 359.97438 * 15 14 13 17 17 C 1.50705 * 120.00213 * 179.97438 * 15 14 13 18 18 S 1.80998 * 109.47268 * 180.02562 * 17 15 14 19 19 C 1.76192 * 99.99970 * 180.02562 * 18 17 15 20 20 H 1.08001 * 120.00145 * 0.02562 * 19 18 17 21 21 C 1.38796 * 120.00358 * 179.97438 * 19 18 17 22 22 N 1.31633 * 120.00738 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99796 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47101 * 89.99542 * 23 21 19 25 25 H 1.48497 * 109.47429 * 210.00089 * 23 21 19 26 26 H 1.48500 * 109.47057 * 330.00385 * 23 21 19 27 27 H 1.08999 * 109.47567 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46879 * 300.00050 * 1 2 3 29 29 H 1.08996 * 109.47001 * 60.00329 * 1 2 3 30 30 H 1.09002 * 109.46939 * 120.00140 * 2 1 3 31 31 H 1.08997 * 109.47071 * 239.99696 * 2 1 3 32 32 H 1.09001 * 109.46542 * 300.00077 * 4 3 2 33 33 H 1.09000 * 109.47017 * 59.99096 * 4 3 2 34 34 H 1.09001 * 109.47296 * 299.99598 * 5 4 3 35 35 H 1.08996 * 109.47369 * 59.99787 * 5 4 3 36 36 H 1.09001 * 113.46662 * 321.92512 * 9 8 6 37 37 H 1.09000 * 113.47314 * 92.37355 * 9 8 6 38 38 H 1.08998 * 114.32809 * 220.46749 * 10 9 8 39 39 H 1.09004 * 114.19960 * 87.72080 * 10 9 8 40 40 H 1.09002 * 109.47275 * 304.10039 * 13 11 8 41 41 H 1.09005 * 109.47639 * 64.10377 * 13 11 8 42 42 H 0.97001 * 119.99868 * 4.97885 * 14 13 11 43 43 H 1.09005 * 109.46843 * 300.00308 * 17 15 14 44 44 H 1.09001 * 109.46460 * 60.00148 * 17 15 14 45 45 H 0.96991 * 120.00314 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9371 1.5058 -0.0008 5 6 4.6065 2.8815 -0.0002 6 6 6.1039 2.7117 -0.0002 7 8 6.5881 1.5997 -0.0002 8 7 6.9051 3.7954 -0.0003 9 6 6.7174 5.2510 -0.0955 10 6 8.1236 5.3411 -0.6978 11 6 8.3521 4.0426 0.0884 12 1 8.7027 4.2071 1.1072 13 6 9.1936 3.0126 -0.6677 14 7 10.6155 3.2829 -0.4415 15 6 11.5503 2.5618 -1.0916 16 8 11.2143 1.6887 -1.8635 17 6 13.0131 2.8402 -0.8594 18 16 14.0091 1.7158 -1.8693 19 6 15.6262 2.2464 -1.4135 20 1 15.7506 3.0485 -0.7010 21 6 16.7403 1.6331 -1.9694 22 7 17.9485 2.0298 -1.6293 23 14 16.5252 0.2444 -3.2002 24 1 16.4576 0.8060 -4.5732 25 1 17.6779 -0.6868 -3.1024 26 1 15.2691 -0.4899 -2.9035 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 4.2405 0.9541 0.8890 33 1 4.2399 0.9543 -0.8909 34 1 4.3031 3.4336 -0.8898 35 1 4.3037 3.4325 0.8901 36 1 5.9298 5.5425 -0.7904 37 1 6.6280 5.7415 0.8737 38 1 8.7108 6.1879 -0.3426 39 1 8.1546 5.2192 -1.7806 40 1 8.9524 2.0121 -0.3085 41 1 8.9764 3.0780 -1.7339 42 1 10.8843 3.9809 0.1761 43 1 13.2353 3.8707 -1.1369 44 1 13.2490 2.6886 0.1939 45 1 18.7270 1.6008 -2.0175 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759815285.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:45:42 Heat of formation + Delta-G solvation = -46.054490 kcal Electronic energy + Delta-G solvation = -24366.615446 eV Core-core repulsion = 20637.728138 eV Total energy + Delta-G solvation = -3728.887308 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 346.117 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.06381 -39.17307 -38.36738 -34.55398 -33.40451 -33.25989 -32.43167 -30.59850 -29.96478 -27.81375 -25.62726 -25.49512 -23.74306 -23.44823 -21.98821 -20.61545 -19.21658 -17.99914 -17.65294 -16.83244 -16.56385 -16.49263 -16.08170 -15.82439 -15.39737 -15.28842 -14.99866 -14.88763 -14.64613 -13.96112 -13.87887 -13.84842 -13.51340 -13.33622 -13.05338 -12.97249 -12.78776 -12.59122 -12.44716 -12.12543 -11.99912 -11.84972 -11.82360 -11.77080 -11.26099 -11.08264 -10.99794 -10.59366 -10.45001 -10.14230 -9.84908 -9.52685 -9.20109 -9.00945 -8.94519 -8.48707 -8.16240 -6.90841 -6.28331 -3.99930 1.08370 2.06597 2.19901 2.28497 2.81894 2.99518 3.33252 3.37721 3.52366 3.69187 3.79094 4.03952 4.21318 4.34247 4.35088 4.41441 4.46544 4.46734 4.50500 4.66978 4.75388 4.82945 4.87939 4.90003 4.94779 5.10897 5.16482 5.21809 5.23856 5.27493 5.29163 5.31977 5.41174 5.53835 5.56207 5.70512 5.79047 5.95470 6.01402 6.48685 7.25330 7.58789 7.72788 7.94721 8.41906 8.50354 9.18088 10.80865 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.020079 B = 0.001638 C = 0.001534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.139883 B =17090.056412 C =18250.742906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.087 4.087 3 S -0.268 6.268 4 C -0.070 4.070 5 C -0.116 4.116 6 C 0.545 3.455 7 O -0.527 6.527 8 N -0.643 5.643 9 C 0.100 3.900 10 C -0.152 4.152 11 C 0.124 3.876 12 H 0.101 0.899 13 C 0.117 3.883 14 N -0.735 5.735 15 C 0.531 3.469 16 O -0.516 6.516 17 C -0.123 4.123 18 S -0.142 6.142 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.881 5.881 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.399 0.601 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.935 7.887 6.497 35.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.235 4.235 3 S -0.042 6.042 4 C -0.219 4.219 5 C -0.157 4.157 6 C 0.333 3.667 7 O -0.403 6.403 8 N -0.381 5.381 9 C -0.023 4.023 10 C -0.189 4.189 11 C 0.020 3.980 12 H 0.119 0.881 13 C -0.008 4.008 14 N -0.390 5.390 15 C 0.316 3.684 16 O -0.390 6.390 17 C -0.274 4.274 18 S 0.084 5.916 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.112 4.112 22 N -0.517 5.517 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.232 0.768 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -34.824 6.493 5.184 35.801 hybrid contribution 1.447 -0.236 0.809 1.674 sum -33.377 6.257 5.993 34.483 Atomic orbital electron populations 1.21520 0.92066 1.02709 1.03222 1.23307 1.00211 0.94709 1.05277 1.86749 1.05479 1.13768 1.98218 1.23078 0.92285 0.99731 1.06782 1.21273 0.90968 0.97795 1.05636 1.20112 0.88122 0.82824 0.75616 1.90782 1.76493 1.23750 1.49253 1.49676 1.07971 1.06630 1.73800 1.22960 0.98660 0.79480 1.01215 1.23547 0.96311 0.97532 1.01538 1.22903 0.81427 0.93797 0.99882 0.88120 1.21449 0.79797 0.99213 1.00371 1.45802 1.05420 1.39889 1.47883 1.20281 0.87364 0.80978 0.79744 1.90720 1.82173 1.31118 1.35018 1.23271 0.93280 1.05304 1.05499 1.84832 1.01789 1.46991 1.57939 1.22319 0.88940 1.24130 1.31525 0.89375 1.24700 0.94109 0.96554 0.95860 1.69934 0.97578 1.41406 1.42811 0.86744 0.80166 0.82839 0.82177 1.19202 1.19927 1.15914 0.90936 0.91652 0.91616 0.89909 0.89858 0.89138 0.89022 0.87969 0.87959 0.89911 0.89268 0.88543 0.88144 0.90105 0.90898 0.76755 0.88426 0.88423 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.64 9.92 37.16 0.37 -0.27 16 2 C -0.09 -0.51 6.66 37.16 0.25 -0.26 16 3 S -0.27 -2.01 21.74 -107.50 -2.34 -4.35 16 4 C -0.07 -0.55 5.23 37.15 0.19 -0.36 16 5 C -0.12 -0.79 5.54 -27.88 -0.15 -0.95 16 6 C 0.55 5.48 8.00 -10.98 -0.09 5.39 16 7 O -0.53 -7.65 15.36 5.56 0.09 -7.57 16 8 N -0.64 -5.14 3.57 -177.61 -0.63 -5.77 16 9 C 0.10 0.40 8.41 -8.64 -0.07 0.33 16 10 C -0.15 -0.74 8.00 -26.35 -0.21 -0.95 16 11 C 0.12 0.97 4.09 -72.40 -0.30 0.67 16 12 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 13 C 0.12 1.44 5.39 -4.04 -0.02 1.41 16 14 N -0.73 -9.33 5.55 -60.29 -0.33 -9.67 16 15 C 0.53 9.63 7.85 -10.98 -0.09 9.55 16 16 O -0.52 -11.69 15.86 5.55 0.09 -11.60 16 17 C -0.12 -2.37 6.16 36.01 0.22 -2.15 16 18 S -0.14 -3.64 18.55 -107.50 -1.99 -5.64 16 19 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 20 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 21 C 0.10 2.83 5.50 -17.43 -0.10 2.74 16 22 N -0.88 -26.64 13.97 55.49 0.78 -25.87 16 23 Si 0.86 21.99 27.74 -169.99 -4.71 17.28 16 24 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.24 -6.07 6.74 56.52 0.38 -5.69 16 27 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.46 8.14 -51.92 -0.42 0.03 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.77 8.10 -51.92 -0.42 0.35 16 33 H 0.09 0.81 8.10 -51.92 -0.42 0.39 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 38 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.10 0.59 7.95 -51.93 -0.41 0.18 16 40 H 0.08 1.27 7.05 -51.93 -0.37 0.91 16 41 H 0.07 1.00 7.89 -51.93 -0.41 0.59 16 42 H 0.40 3.59 8.48 -40.82 -0.35 3.24 16 43 H 0.10 1.71 8.14 -51.91 -0.42 1.29 16 44 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 45 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 403.82 15.07 6.09 6.09 Total: -1.00 -37.62 403.82 -10.11 -47.73 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -7.45 Total: -1.00 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: 0.32 Total: 0.36 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: -0.19 Total: -41.31 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: 0.17 Total: -19.17 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.71 Total: 17.28 kcal Atomic # 16 Polarization: -5.66 SS G_CDS: -4.33 Total: -9.99 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -37.62 -10.11 -47.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759815285.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.677 kcal (2) G-P(sol) polarization free energy of solvation -37.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds