Wall clock time and date at job start Sat Apr 11 2020 07:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 S 1.81405 * 109.46817 * 2 1 4 4 C 1.81399 * 102.99706 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47162 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.46925 * 179.97438 * 5 4 3 7 7 O 1.21279 * 120.00072 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99766 * 179.97438 * 6 5 4 9 9 C 1.47069 * 136.05381 * 359.63413 * 8 6 5 10 10 C 1.53764 * 87.88386 * 152.95944 * 9 8 6 11 11 N 1.46503 * 114.26607 * 139.79116 * 10 9 8 12 12 C 1.46500 * 119.99687 * 326.47521 * 11 10 9 13 13 C 1.34771 * 120.00039 * 146.47457 * 11 10 9 14 14 O 1.21277 * 120.00161 * 359.97438 * 13 11 10 15 15 C 1.50703 * 119.99892 * 180.02562 * 13 11 10 16 16 S 1.81001 * 109.46925 * 180.02562 * 15 13 11 17 17 C 1.76200 * 100.00025 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99545 * 359.97438 * 17 16 15 19 19 C 1.38796 * 120.00243 * 180.02562 * 17 16 15 20 20 N 1.31633 * 119.99764 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00157 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47148 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47675 * 119.99809 * 21 19 17 24 24 H 1.48500 * 109.47362 * 239.99904 * 21 19 17 25 25 C 1.47060 * 136.05953 * 179.97438 * 8 6 5 26 26 H 1.09004 * 109.46853 * 300.00228 * 1 2 3 27 27 H 1.09007 * 109.47210 * 59.99627 * 1 2 3 28 28 H 1.08990 * 109.47082 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46988 * 240.00255 * 2 1 3 30 30 H 1.08998 * 109.46864 * 119.99849 * 2 1 3 31 31 H 1.09004 * 109.47089 * 299.99939 * 4 3 2 32 32 H 1.09004 * 109.47568 * 59.99949 * 4 3 2 33 33 H 1.09000 * 109.46497 * 299.99702 * 5 4 3 34 34 H 1.08996 * 109.46876 * 60.00092 * 5 4 3 35 35 H 1.08999 * 113.46933 * 267.68802 * 9 8 6 36 36 H 1.08999 * 113.46973 * 38.13379 * 9 8 6 37 37 H 1.09002 * 114.39341 * 272.66826 * 10 9 8 38 38 H 1.08999 * 109.47307 * 90.00140 * 12 11 10 39 39 H 1.09004 * 109.46688 * 210.00116 * 12 11 10 40 40 H 1.08997 * 109.47251 * 329.99740 * 12 11 10 41 41 H 1.09001 * 109.46890 * 299.99770 * 15 13 11 42 42 H 1.08996 * 109.47382 * 59.99972 * 15 13 11 43 43 H 0.96996 * 119.99715 * 180.02562 * 20 19 17 44 44 H 1.09004 * 113.46777 * 321.86864 * 25 8 6 45 45 H 1.08997 * 113.47079 * 92.24669 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.9371 1.5059 -0.0008 5 6 4.6064 2.8817 -0.0002 6 6 6.1039 2.7118 -0.0002 7 8 6.5880 1.5999 -0.0002 8 7 6.9050 3.7956 -0.0003 9 6 6.7137 5.2538 -0.0069 10 6 8.0745 5.3783 0.6982 11 7 8.9005 6.4901 0.2208 12 6 8.8433 6.8935 -1.1864 13 6 9.7129 7.1417 1.0762 14 8 9.7599 6.8080 2.2412 15 6 10.5622 8.2858 0.5852 16 16 11.5354 8.9481 1.9601 17 6 12.4066 10.2333 1.1272 18 1 12.2448 10.3996 0.0724 19 6 13.3017 11.0312 1.8263 20 7 13.4992 10.8280 3.1117 21 14 14.2258 12.3932 0.9430 22 1 13.8286 12.4138 -0.4878 23 1 13.8973 13.6999 1.5672 24 1 15.6868 12.1483 1.0471 25 6 8.3551 4.0406 0.0001 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 4.2406 0.9542 0.8890 32 1 4.2399 0.9545 -0.8910 33 1 4.3030 3.4337 -0.8898 34 1 4.3037 3.4327 0.8902 35 1 6.7023 5.6856 -1.0076 36 1 5.8744 5.5843 0.6049 37 1 8.0259 5.3135 1.7852 38 1 8.0706 7.6513 -1.3160 39 1 9.8079 7.3031 -1.4864 40 1 8.6089 6.0264 -1.8037 41 1 11.2334 7.9305 -0.1966 42 1 9.9195 9.0693 0.1839 43 1 14.1244 11.3859 3.6004 44 1 8.9139 3.3376 0.6179 45 1 8.7769 4.1512 -0.9988 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001759946505.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:45:49 Heat of formation + Delta-G solvation = -56.534904 kcal Electronic energy + Delta-G solvation = -24480.001342 eV Core-core repulsion = 20750.659569 eV Total energy + Delta-G solvation = -3729.341773 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 346.117 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.97083 -40.50203 -39.07786 -35.94247 -34.56249 -34.06384 -33.67258 -31.55757 -29.75675 -27.90377 -27.64991 -27.24812 -25.73594 -24.11042 -22.85058 -20.59199 -20.00010 -19.59500 -18.57232 -18.26324 -17.41858 -17.16874 -17.04726 -16.86347 -16.69969 -16.60571 -16.13151 -15.68934 -15.31453 -15.02673 -14.67848 -14.55293 -14.45639 -14.23337 -13.90478 -13.82384 -13.68290 -13.44237 -13.20560 -13.10994 -13.10111 -13.04069 -12.90366 -12.61645 -12.56897 -12.31321 -12.24530 -12.09961 -11.69038 -11.15711 -11.13970 -10.98604 -10.87388 -10.22761 -9.91386 -9.70702 -8.73329 -8.64691 -8.32831 -6.10536 0.53229 1.22849 1.40998 1.43006 1.45338 1.52938 1.54198 1.56467 1.70266 2.21574 2.29681 3.01960 3.23858 3.27117 3.36217 3.61187 3.73135 3.79605 3.84154 4.00353 4.06148 4.06303 4.18685 4.28975 4.34424 4.41234 4.45078 4.50254 4.51911 4.55578 4.60889 4.68218 4.73716 4.80523 4.86599 4.90081 4.90360 5.03596 5.22029 5.44646 5.49642 6.19418 6.22666 6.54328 6.92370 7.09100 7.11450 8.76582 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.038866 B = 0.001482 C = 0.001481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.249917 B =18893.711322 C =18904.116687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.085 4.085 3 S -0.285 6.285 4 C -0.063 4.063 5 C -0.107 4.107 6 C 0.549 3.451 7 O -0.584 6.584 8 N -0.644 5.644 9 C 0.104 3.896 10 C 0.108 3.892 11 N -0.595 5.595 12 C 0.062 3.938 13 C 0.536 3.464 14 O -0.563 6.563 15 C -0.123 4.123 16 S -0.158 6.158 17 C -0.542 4.542 18 H 0.085 0.915 19 C 0.014 3.986 20 N -0.912 5.912 21 Si 0.997 3.003 22 H -0.254 1.254 23 H -0.275 1.275 24 H -0.276 1.276 25 C 0.087 3.913 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.125 0.875 34 H 0.117 0.883 35 H 0.126 0.874 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.100 0.900 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.270 0.730 44 H 0.063 0.937 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.583 -16.252 -14.493 32.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.233 4.233 3 S -0.059 6.059 4 C -0.212 4.212 5 C -0.148 4.148 6 C 0.339 3.661 7 O -0.464 6.464 8 N -0.379 5.379 9 C -0.019 4.019 10 C 0.002 3.998 11 N -0.329 5.329 12 C -0.079 4.079 13 C 0.324 3.676 14 O -0.441 6.441 15 C -0.274 4.274 16 S 0.070 5.930 17 C -0.690 4.690 18 H 0.103 0.897 19 C -0.191 4.191 20 N -0.549 5.549 21 Si 0.819 3.181 22 H -0.178 1.178 23 H -0.201 1.201 24 H -0.202 1.202 25 C -0.037 4.037 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.143 0.857 34 H 0.135 0.865 35 H 0.144 0.856 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.118 0.882 41 H 0.129 0.871 42 H 0.131 0.869 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -24.947 -16.563 -12.654 32.508 hybrid contribution 1.722 -0.127 -1.174 2.088 sum -23.225 -16.690 -13.828 31.767 Atomic orbital electron populations 1.21530 0.91129 1.03636 1.03011 1.23406 1.00946 0.93317 1.05616 1.86857 1.05146 1.15638 1.98216 1.22972 0.92596 0.99934 1.05721 1.21283 0.88199 0.97830 1.07446 1.20540 0.89254 0.81871 0.74469 1.90718 1.77654 1.25555 1.52480 1.49298 1.08579 1.07266 1.72782 1.23697 0.97366 0.77659 1.03191 1.22750 0.91770 0.85191 1.00066 1.47603 1.41625 1.32676 1.10997 1.22234 1.04487 1.02617 0.78597 1.20187 0.79481 0.82660 0.85310 1.90698 1.66789 1.67225 1.19407 1.23387 1.01406 0.99138 1.03456 1.85648 1.51544 1.41263 1.14573 1.23228 1.28634 1.18770 0.98347 0.89688 1.26105 0.97109 1.00232 0.95661 1.70194 1.35396 1.40044 1.09278 0.84926 0.77488 0.76888 0.78780 1.17766 1.20076 1.20206 1.23553 0.82698 0.95324 1.02127 0.91966 0.91770 0.89350 0.89376 0.89635 0.90330 0.89835 0.85726 0.86465 0.85614 0.87409 0.87254 0.89714 0.90198 0.88179 0.87103 0.86860 0.92089 0.91801 0.87216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.02 9.92 71.98 0.71 -0.31 16 2 C -0.08 -0.85 6.66 71.98 0.48 -0.37 16 3 S -0.28 -3.97 21.74 -56.49 -1.23 -5.20 16 4 C -0.06 -0.93 5.23 71.98 0.38 -0.56 16 5 C -0.11 -1.35 5.54 29.85 0.17 -1.19 16 6 C 0.55 10.84 8.08 87.66 0.71 11.55 16 7 O -0.58 -16.72 16.76 -3.03 -0.05 -16.77 16 8 N -0.64 -10.86 3.69 -857.87 -3.16 -14.02 16 9 C 0.10 1.14 7.85 83.27 0.65 1.79 16 10 C 0.11 2.09 4.57 45.55 0.21 2.30 16 11 N -0.60 -12.94 3.12 -821.43 -2.56 -15.49 16 12 C 0.06 0.74 8.92 127.77 1.14 1.88 16 13 C 0.54 18.31 7.69 87.66 0.67 18.98 16 14 O -0.56 -24.93 15.37 -3.02 -0.05 -24.98 16 15 C -0.12 -4.51 4.71 71.24 0.34 -4.18 16 16 S -0.16 -8.49 20.57 -56.49 -1.16 -9.65 16 17 C -0.54 -30.00 9.50 67.95 0.65 -29.36 16 18 H 0.09 4.33 7.80 -2.91 -0.02 4.30 16 19 C 0.01 0.75 5.49 84.86 0.47 1.22 16 20 N -0.91 -55.35 13.22 21.65 0.29 -55.06 16 21 Si 1.00 42.60 29.55 68.60 2.03 44.63 16 22 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 23 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 24 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16 25 C 0.09 1.61 8.17 83.17 0.68 2.29 16 26 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 27 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 28 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.08 1.33 8.10 -2.39 -0.02 1.31 16 32 H 0.08 1.32 8.10 -2.39 -0.02 1.30 16 33 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.13 0.67 6.57 -2.39 -0.02 0.66 16 36 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.11 2.78 7.29 -2.39 -0.02 2.76 16 38 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.08 1.05 6.44 -2.38 -0.02 1.03 16 40 H 0.10 0.64 6.18 -2.39 -0.01 0.62 16 41 H 0.11 3.63 7.40 -2.39 -0.02 3.61 16 42 H 0.11 3.66 8.11 -2.40 -0.02 3.64 16 43 H 0.27 15.21 8.31 -92.71 -0.77 14.43 16 44 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 45 H 0.11 1.58 6.97 -2.39 -0.02 1.56 16 Total: -1.00 -82.32 400.35 2.33 -79.99 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 0.98 Total: 12.51 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: 7.25 Total: 4.04 kcal Atomic # 7 Polarization: -79.14 SS G_CDS: -5.44 Total: -84.57 kcal Atomic # 8 Polarization: -41.65 SS G_CDS: -0.10 Total: -41.75 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: -12.46 SS G_CDS: -2.39 Total: -14.85 kcal Total: -82.32 2.33 -79.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759946505.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.457 kcal (2) G-P(sol) polarization free energy of solvation -82.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds