Wall clock time and date at job start Sat Apr 11 2020 07:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99774 * 2 1 4 4 H 1.48498 * 109.47058 * 269.99948 * 3 2 1 5 5 H 1.48504 * 109.47094 * 29.99903 * 3 2 1 6 6 H 1.48503 * 109.46709 * 149.99888 * 3 2 1 7 7 C 1.37873 * 120.00174 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00293 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99820 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47034 * 179.97438 * 9 7 2 11 11 C 1.50692 * 109.47199 * 179.97438 * 10 9 7 12 12 O 1.21287 * 120.00340 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00031 * 179.97438 * 11 10 9 14 14 C 1.47084 * 120.88279 * 179.97438 * 13 11 10 15 15 C 1.53238 * 108.52402 * 231.16509 * 14 13 11 16 16 N 1.46898 * 109.33831 * 306.17110 * 15 14 13 17 17 C 1.38325 * 110.99631 * 187.25299 * 16 15 14 18 18 N 1.32476 * 120.53234 * 359.72345 * 17 16 15 19 19 C 1.32086 * 121.19020 * 179.80362 * 18 17 16 20 20 N 1.31291 * 122.17830 * 0.45932 * 19 18 17 21 21 C 1.33898 * 121.04411 * 359.78749 * 20 19 18 22 22 S 1.75749 * 131.28694 * 179.97438 * 21 20 19 23 23 C 1.75355 * 92.18504 * 180.02562 * 22 21 20 24 24 C 1.31882 * 111.39371 * 0.02562 * 23 22 21 25 25 C 1.39763 * 119.10184 * 359.97438 * 21 20 19 26 26 C 1.46893 * 111.27304 * 63.10609 * 16 15 14 27 27 C 1.47079 * 120.88334 * 359.97438 * 13 11 10 28 28 H 0.96996 * 120.00188 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47075 * 59.99955 * 9 7 2 30 30 H 1.08995 * 109.46820 * 299.99349 * 9 7 2 31 31 H 1.09004 * 109.46763 * 59.99635 * 10 9 7 32 32 H 1.09000 * 109.46979 * 300.00293 * 10 9 7 33 33 H 1.09004 * 109.62758 * 111.44956 * 14 13 11 34 34 H 1.09002 * 109.62781 * 350.88142 * 14 13 11 35 35 H 1.09004 * 109.49152 * 186.21082 * 15 14 13 36 36 H 1.08997 * 109.49051 * 66.13448 * 15 14 13 37 37 H 1.07995 * 118.91278 * 180.24959 * 19 18 17 38 38 H 1.08000 * 124.30094 * 179.97438 * 23 22 21 39 39 H 1.08008 * 122.59020 * 180.02562 * 24 23 22 40 40 H 1.09002 * 109.49194 * 56.84791 * 26 16 15 41 41 H 1.08988 * 109.49944 * 176.93431 * 26 16 15 42 42 H 1.09003 * 109.62671 * 248.54546 * 27 13 11 43 43 H 1.09000 * 109.62360 * 9.12299 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4919 -4.9671 0.0012 12 8 0.2790 -4.9672 0.0021 13 7 2.1658 -6.1343 0.0008 14 6 1.4501 -7.4193 0.0019 15 6 2.0105 -8.2876 1.1334 16 7 3.4691 -8.3891 0.9919 17 6 3.9931 -9.2944 1.8970 18 7 3.2010 -9.9330 2.7454 19 6 3.6869 -10.8028 3.6125 20 7 4.9694 -11.0737 3.6872 21 6 5.8499 -10.4755 2.8749 22 16 7.5955 -10.6301 2.7418 23 6 7.6672 -9.4584 1.4392 24 6 6.4683 -8.9971 1.1405 25 6 5.3879 -9.5499 1.9352 26 6 4.1108 -7.0750 1.1303 27 6 3.6364 -6.1569 -0.0009 28 1 -0.4850 0.8400 0.0004 29 1 0.6248 -2.5571 -0.8896 30 1 0.6242 -2.5567 0.8903 31 1 2.8720 -3.6042 0.8905 32 1 2.8720 -3.6043 -0.8894 33 1 1.5989 -7.9221 -0.9537 34 1 0.3866 -7.2459 0.1658 35 1 1.5697 -9.2831 1.0803 36 1 1.7690 -7.8333 2.0942 37 1 3.0071 -11.3055 4.2845 38 1 8.5775 -9.1526 0.9450 39 1 6.3035 -8.2655 0.3632 40 1 3.8400 -6.6375 2.0913 41 1 5.1931 -7.1910 1.0751 42 1 3.9957 -6.5383 -0.9567 43 1 4.0182 -5.1489 0.1612 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292593083.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:43:16 Heat of formation + Delta-G solvation = 53.395457 kcal Electronic energy + Delta-G solvation = -27299.964176 eV Core-core repulsion = 23472.238140 eV Total energy + Delta-G solvation = -3827.726035 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 346.120 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.74855 -39.96367 -38.18896 -36.63186 -35.14715 -33.57678 -32.78934 -31.87432 -30.74792 -30.25311 -27.65396 -26.02053 -25.34548 -23.97190 -23.54508 -22.31195 -21.59704 -20.74155 -19.23745 -18.71793 -18.06175 -17.02438 -16.49756 -16.03502 -15.89721 -15.70816 -15.54753 -15.48122 -15.04370 -14.87803 -14.68934 -14.45368 -14.32971 -13.56371 -13.36538 -13.13596 -12.72451 -12.61838 -12.21188 -12.15355 -11.90518 -11.68758 -11.59734 -11.45726 -11.36535 -11.27692 -11.11948 -10.96244 -10.61948 -10.01620 -9.90758 -9.67497 -9.64849 -9.24036 -9.06649 -9.05736 -8.60755 -8.42533 -8.34964 -5.99309 -4.04126 0.02249 0.52458 0.71091 1.40188 1.72051 2.76313 3.10182 3.18583 3.30712 3.32483 3.37161 3.39269 3.75007 3.94610 4.06404 4.30741 4.43271 4.50822 4.58388 4.61899 4.87397 4.91252 4.99942 5.09346 5.19106 5.27449 5.35702 5.40826 5.48819 5.54340 5.58609 5.63975 5.76428 5.85082 6.04028 6.11511 6.13690 6.47420 6.56896 6.60935 6.82438 7.61863 7.68051 7.70311 7.81392 8.03088 8.33732 8.63838 9.04084 9.59663 11.11598 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.016867 B = 0.002255 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.640487 B =12412.637657 C =13450.548101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.129 4.129 11 C 0.514 3.486 12 O -0.529 6.529 13 N -0.630 5.630 14 C 0.112 3.888 15 C 0.052 3.948 16 N -0.467 5.467 17 C 0.417 3.583 18 N -0.562 5.562 19 C 0.341 3.659 20 N -0.516 5.516 21 C 0.103 3.897 22 S 0.161 5.839 23 C -0.204 4.204 24 C -0.093 4.093 25 C -0.196 4.196 26 C 0.036 3.964 27 C 0.114 3.886 28 H 0.261 0.739 29 H 0.024 0.976 30 H 0.023 0.977 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.062 0.938 37 H 0.204 0.796 38 H 0.179 0.821 39 H 0.157 0.843 40 H 0.060 0.940 41 H 0.103 0.897 42 H 0.078 0.922 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.138 -24.017 3.585 29.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.305 3.695 12 O -0.404 6.404 13 N -0.367 5.367 14 C -0.011 4.011 15 C -0.075 4.075 16 N -0.184 5.184 17 C 0.168 3.832 18 N -0.284 5.284 19 C 0.048 3.952 20 N -0.234 5.234 21 C -0.148 4.148 22 S 0.419 5.581 23 C -0.338 4.338 24 C -0.123 4.123 25 C -0.213 4.213 26 C -0.090 4.090 27 C -0.010 4.010 28 H 0.071 0.929 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.080 0.920 37 H 0.221 0.779 38 H 0.196 0.804 39 H 0.175 0.825 40 H 0.079 0.921 41 H 0.121 0.879 42 H 0.096 0.904 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 15.917 -25.276 4.423 30.196 hybrid contribution -0.165 2.140 -0.628 2.237 sum 15.751 -23.136 3.795 28.245 Atomic orbital electron populations 1.69994 1.06064 1.26637 1.50052 1.25026 0.94824 0.99243 0.95270 0.86595 0.79764 0.83523 0.78086 1.20645 1.21210 1.19887 1.21197 0.92879 0.90970 1.51562 0.92619 1.18909 0.93160 0.89343 0.98650 1.21896 1.00805 0.91893 1.02259 1.21627 0.88465 0.85319 0.74118 1.90673 1.14346 1.87004 1.48340 1.48408 1.06212 1.06048 1.76073 1.21677 0.98475 0.83191 0.97754 1.22547 0.83599 1.02051 0.99281 1.58617 1.08134 1.08983 1.42625 1.19989 0.87321 0.90805 0.85046 1.68316 1.39527 1.13509 1.07083 1.24791 0.88965 0.89192 0.92222 1.68065 1.03288 1.26912 1.25185 1.23842 1.00362 0.95614 0.94966 1.84343 0.95902 1.43182 1.34664 1.25266 1.02145 1.03310 1.03077 1.20762 0.89970 1.01232 1.00331 1.20190 0.94548 1.04216 1.02342 1.22978 1.00257 0.85563 1.00183 1.21798 0.80739 1.00549 0.97886 0.92907 0.95791 0.95840 0.90310 0.90120 0.91080 0.87930 0.88157 0.92002 0.77924 0.80401 0.82538 0.92125 0.87904 0.90360 0.87654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.14 13.29 55.43 0.74 -26.40 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.53 -14.65 9.11 -34.44 -0.31 -14.97 16 8 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 10 C -0.13 -2.50 4.00 -27.88 -0.11 -2.61 16 11 C 0.51 9.61 7.71 -10.99 -0.08 9.53 16 12 O -0.53 -12.18 15.44 5.55 0.09 -12.10 16 13 N -0.63 -8.71 3.01 -172.47 -0.52 -9.23 16 14 C 0.11 1.37 6.60 -3.60 -0.02 1.35 16 15 C 0.05 0.57 4.83 -3.70 -0.02 0.55 16 16 N -0.47 -4.73 4.63 -172.22 -0.80 -5.53 16 17 C 0.42 4.52 6.46 -154.57 -1.00 3.52 16 18 N -0.56 -6.21 8.78 -13.44 -0.12 -6.32 16 19 C 0.34 3.34 12.27 -92.33 -1.13 2.21 16 20 N -0.52 -5.70 10.47 -13.32 -0.14 -5.83 16 21 C 0.10 1.07 7.70 -16.08 -0.12 0.95 16 22 S 0.16 1.21 23.23 -107.50 -2.50 -1.28 16 23 C -0.20 -1.22 11.02 28.83 0.32 -0.90 16 24 C -0.09 -0.67 8.89 -38.78 -0.34 -1.02 16 25 C -0.20 -1.96 5.74 -105.24 -0.60 -2.56 16 26 C 0.04 0.33 5.33 -3.72 -0.02 0.31 16 27 C 0.11 1.13 6.50 -3.61 -0.02 1.11 16 28 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 30 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 31 H 0.08 1.38 7.66 -51.93 -0.40 0.99 16 32 H 0.08 1.41 8.00 -51.93 -0.42 1.00 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.10 1.42 7.06 -51.93 -0.37 1.06 16 35 H 0.10 1.03 7.67 -51.93 -0.40 0.64 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.20 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.18 0.54 8.06 -52.49 -0.42 0.11 16 39 H 0.16 0.85 6.50 -52.48 -0.34 0.51 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.10 0.71 4.50 -51.94 -0.23 0.48 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.11 0.99 6.02 -51.93 -0.31 0.68 16 LS Contribution 363.92 15.07 5.48 5.48 Total: -1.00 -35.53 363.92 -11.87 -47.40 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -5.38 Total: -2.39 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -3.70 Total: -0.11 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: -0.84 Total: -53.32 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.09 Total: -12.10 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.50 Total: -1.28 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.53 -11.87 -47.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292593083.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.794 kcal (2) G-P(sol) polarization free energy of solvation -35.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds