Wall clock time and date at job start Sat Apr 11 2020 07:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99774 * 2 1 4 4 H 1.48498 * 109.47058 * 269.99948 * 3 2 1 5 5 H 1.48504 * 109.47094 * 29.99903 * 3 2 1 6 6 H 1.48503 * 109.46709 * 149.99888 * 3 2 1 7 7 C 1.37873 * 120.00174 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00293 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99820 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47034 * 179.97438 * 9 7 2 11 11 C 1.50692 * 109.47199 * 179.97438 * 10 9 7 12 12 O 1.21287 * 120.00340 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00031 * 179.97438 * 11 10 9 14 14 C 1.47084 * 120.88279 * 179.97438 * 13 11 10 15 15 C 1.53238 * 108.52402 * 231.16509 * 14 13 11 16 16 N 1.46898 * 109.33831 * 306.17110 * 15 14 13 17 17 C 1.38325 * 110.99631 * 187.25299 * 16 15 14 18 18 N 1.32476 * 120.53234 * 359.72345 * 17 16 15 19 19 C 1.32086 * 121.19020 * 179.80362 * 18 17 16 20 20 N 1.31291 * 122.17830 * 0.45932 * 19 18 17 21 21 C 1.33898 * 121.04411 * 359.78749 * 20 19 18 22 22 S 1.75749 * 131.28694 * 179.97438 * 21 20 19 23 23 C 1.75355 * 92.18504 * 180.02562 * 22 21 20 24 24 C 1.31882 * 111.39371 * 0.02562 * 23 22 21 25 25 C 1.39763 * 119.10184 * 359.97438 * 21 20 19 26 26 C 1.46893 * 111.27304 * 63.10609 * 16 15 14 27 27 C 1.47079 * 120.88334 * 359.97438 * 13 11 10 28 28 H 0.96996 * 120.00188 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47075 * 59.99955 * 9 7 2 30 30 H 1.08995 * 109.46820 * 299.99349 * 9 7 2 31 31 H 1.09004 * 109.46763 * 59.99635 * 10 9 7 32 32 H 1.09000 * 109.46979 * 300.00293 * 10 9 7 33 33 H 1.09004 * 109.62758 * 111.44956 * 14 13 11 34 34 H 1.09002 * 109.62781 * 350.88142 * 14 13 11 35 35 H 1.09004 * 109.49152 * 186.21082 * 15 14 13 36 36 H 1.08997 * 109.49051 * 66.13448 * 15 14 13 37 37 H 1.07995 * 118.91278 * 180.24959 * 19 18 17 38 38 H 1.08000 * 124.30094 * 179.97438 * 23 22 21 39 39 H 1.08008 * 122.59020 * 180.02562 * 24 23 22 40 40 H 1.09002 * 109.49194 * 56.84791 * 26 16 15 41 41 H 1.08988 * 109.49944 * 176.93431 * 26 16 15 42 42 H 1.09003 * 109.62671 * 248.54546 * 27 13 11 43 43 H 1.09000 * 109.62360 * 9.12299 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4919 -4.9671 0.0012 12 8 0.2790 -4.9672 0.0021 13 7 2.1658 -6.1343 0.0008 14 6 1.4501 -7.4193 0.0019 15 6 2.0105 -8.2876 1.1334 16 7 3.4691 -8.3891 0.9919 17 6 3.9931 -9.2944 1.8970 18 7 3.2010 -9.9330 2.7454 19 6 3.6869 -10.8028 3.6125 20 7 4.9694 -11.0737 3.6872 21 6 5.8499 -10.4755 2.8749 22 16 7.5955 -10.6301 2.7418 23 6 7.6672 -9.4584 1.4392 24 6 6.4683 -8.9971 1.1405 25 6 5.3879 -9.5499 1.9352 26 6 4.1108 -7.0750 1.1303 27 6 3.6364 -6.1569 -0.0009 28 1 -0.4850 0.8400 0.0004 29 1 0.6248 -2.5571 -0.8896 30 1 0.6242 -2.5567 0.8903 31 1 2.8720 -3.6042 0.8905 32 1 2.8720 -3.6043 -0.8894 33 1 1.5989 -7.9221 -0.9537 34 1 0.3866 -7.2459 0.1658 35 1 1.5697 -9.2831 1.0803 36 1 1.7690 -7.8333 2.0942 37 1 3.0071 -11.3055 4.2845 38 1 8.5775 -9.1526 0.9450 39 1 6.3035 -8.2655 0.3632 40 1 3.8400 -6.6375 2.0913 41 1 5.1931 -7.1910 1.0751 42 1 3.9957 -6.5383 -0.9567 43 1 4.0182 -5.1489 0.1612 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292593083.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:43:15 Heat of formation + Delta-G solvation = 30.375803 kcal Electronic energy + Delta-G solvation = -27300.962383 eV Core-core repulsion = 23472.238140 eV Total energy + Delta-G solvation = -3828.724242 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 346.120 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.49146 -41.13492 -39.30757 -37.22899 -36.23895 -35.60018 -33.66366 -33.23236 -32.18653 -30.98685 -28.78245 -27.50234 -26.35303 -24.79320 -24.52076 -23.68013 -22.47074 -21.85310 -20.17152 -19.66037 -19.09407 -18.60997 -17.57665 -17.13810 -16.85361 -16.75996 -16.62976 -16.50359 -16.38825 -15.83467 -15.67314 -15.54326 -14.99728 -14.84688 -14.65577 -14.20753 -13.87866 -13.73815 -13.49644 -13.30836 -13.23166 -12.81129 -12.72565 -12.59891 -12.43576 -12.39808 -12.30160 -12.04774 -11.92019 -11.89098 -11.56530 -11.29236 -10.70827 -10.62536 -10.55736 -10.40087 -9.82094 -9.64775 -9.08857 -8.16845 -6.30902 -0.62673 -0.22880 0.10387 0.86839 1.17298 1.43435 1.46074 1.56762 1.64975 1.85525 2.17101 2.44156 2.58529 3.06624 3.16525 3.25120 3.43932 3.54645 3.69079 3.75125 3.88080 4.03736 4.10755 4.19566 4.23071 4.36053 4.43820 4.51429 4.56753 4.67246 4.68409 4.77423 4.91526 4.94127 5.00881 5.07672 5.09305 5.22597 5.46921 5.53760 5.63311 5.70618 5.86119 5.86219 6.17923 6.34056 6.87952 6.95277 7.22128 7.39650 8.95889 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.016867 B = 0.002255 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.640487 B =12412.637657 C =13450.548101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.973 3.027 4 H -0.271 1.271 5 H -0.289 1.289 6 H -0.253 1.253 7 C -0.540 4.540 8 H 0.079 0.921 9 C 0.042 3.958 10 C -0.115 4.115 11 C 0.513 3.487 12 O -0.588 6.588 13 N -0.619 5.619 14 C 0.114 3.886 15 C 0.066 3.934 16 N -0.462 5.462 17 C 0.402 3.598 18 N -0.579 5.579 19 C 0.330 3.670 20 N -0.533 5.533 21 C 0.070 3.930 22 S 0.172 5.828 23 C -0.183 4.183 24 C -0.108 4.108 25 C -0.200 4.200 26 C 0.040 3.960 27 C 0.108 3.892 28 H 0.262 0.738 29 H -0.019 1.019 30 H -0.021 1.021 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.043 0.957 37 H 0.229 0.771 38 H 0.215 0.785 39 H 0.180 0.820 40 H 0.045 0.955 41 H 0.132 0.868 42 H 0.106 0.894 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.442 -24.197 2.874 31.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.797 3.203 4 H -0.197 1.197 5 H -0.215 1.215 6 H -0.177 1.177 7 C -0.578 4.578 8 H 0.097 0.903 9 C 0.004 3.996 10 C -0.155 4.155 11 C 0.303 3.697 12 O -0.467 6.467 13 N -0.353 5.353 14 C -0.009 4.009 15 C -0.062 4.062 16 N -0.179 5.179 17 C 0.153 3.847 18 N -0.302 5.302 19 C 0.038 3.962 20 N -0.252 5.252 21 C -0.180 4.180 22 S 0.430 5.570 23 C -0.317 4.317 24 C -0.137 4.137 25 C -0.217 4.217 26 C -0.085 4.085 27 C -0.014 4.014 28 H 0.071 0.929 29 H 0.000 1.000 30 H -0.003 1.003 31 H 0.122 0.878 32 H 0.127 0.873 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.124 0.876 36 H 0.061 0.939 37 H 0.245 0.755 38 H 0.231 0.769 39 H 0.197 0.803 40 H 0.064 0.936 41 H 0.150 0.850 42 H 0.125 0.875 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 20.305 -25.514 3.718 32.819 hybrid contribution -1.419 2.064 -0.383 2.534 sum 18.886 -23.450 3.335 30.293 Atomic orbital electron populations 1.70184 1.08384 1.27757 1.51599 1.26150 0.95689 1.04003 0.94730 0.85332 0.78730 0.77724 0.78526 1.19681 1.21501 1.17659 1.21714 0.94087 0.91417 1.50550 0.90258 1.18696 0.93734 0.92592 0.94554 1.21651 0.99309 0.89742 1.04783 1.21449 0.87661 0.86548 0.73998 1.90655 1.16723 1.87892 1.51459 1.48350 1.08147 1.05050 1.73783 1.21732 0.97300 0.82596 0.99251 1.22316 0.84658 1.01629 0.97546 1.58674 1.07208 1.09352 1.42652 1.20155 0.88028 0.91099 0.85429 1.68317 1.40154 1.14052 1.07646 1.25305 0.89254 0.89210 0.92432 1.68097 1.03846 1.27445 1.25767 1.24334 1.01768 0.96336 0.95520 1.84339 0.93803 1.43572 1.35251 1.25715 1.03098 1.01355 1.01510 1.20947 0.89401 1.02334 1.00995 1.20454 0.94660 1.04070 1.02511 1.23018 1.01793 0.84749 0.98987 1.22172 0.77733 1.01775 0.99701 0.92939 1.00035 1.00264 0.87770 0.87259 0.89123 0.90204 0.87649 0.93900 0.75489 0.76862 0.80301 0.93634 0.85009 0.87545 0.86511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.31 13.29 21.45 0.28 -59.02 16 2 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 3 Si 0.97 43.48 29.54 68.60 2.03 45.51 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.25 -10.37 7.11 99.48 0.71 -9.66 16 7 C -0.54 -29.96 9.11 25.60 0.23 -29.73 16 8 H 0.08 3.93 7.74 -2.91 -0.02 3.91 16 9 C 0.04 2.29 4.26 29.85 0.13 2.42 16 10 C -0.12 -4.41 4.00 29.85 0.12 -4.29 16 11 C 0.51 19.42 7.71 87.65 0.68 20.10 16 12 O -0.59 -28.67 15.44 -3.05 -0.05 -28.72 16 13 N -0.62 -16.45 3.01 -817.97 -2.46 -18.91 16 14 C 0.11 2.76 6.60 86.35 0.57 3.33 16 15 C 0.07 1.41 4.83 86.38 0.42 1.83 16 16 N -0.46 -8.55 4.63 -698.79 -3.24 -11.79 16 17 C 0.40 8.22 6.46 133.95 0.86 9.08 16 18 N -0.58 -12.63 8.78 -196.42 -1.73 -14.35 16 19 C 0.33 6.41 12.27 180.95 2.22 8.63 16 20 N -0.53 -11.53 10.47 -196.04 -2.05 -13.58 16 21 C 0.07 1.38 7.70 84.75 0.65 2.03 16 22 S 0.17 2.21 23.23 -56.49 -1.31 0.89 16 23 C -0.18 -1.45 11.02 66.99 0.74 -0.71 16 24 C -0.11 -1.17 8.89 23.20 0.21 -0.96 16 25 C -0.20 -3.59 5.74 -20.27 -0.12 -3.71 16 26 C 0.04 0.62 5.33 86.38 0.46 1.08 16 27 C 0.11 1.80 6.50 86.34 0.56 2.36 16 28 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 29 H -0.02 -1.17 8.10 -2.39 -0.02 -1.19 16 30 H -0.02 -1.32 8.10 -2.39 -0.02 -1.34 16 31 H 0.10 3.44 7.66 -2.39 -0.02 3.42 16 32 H 0.11 3.55 8.00 -2.39 -0.02 3.53 16 33 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 34 H 0.08 2.34 7.06 -2.39 -0.02 2.32 16 35 H 0.11 2.16 7.67 -2.39 -0.02 2.14 16 36 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.23 2.76 8.06 -2.91 -0.02 2.74 16 38 H 0.21 0.11 8.06 -2.91 -0.02 0.09 16 39 H 0.18 1.06 6.50 -2.91 -0.02 1.04 16 40 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.13 1.29 4.50 -2.39 -0.01 1.28 16 42 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.12 1.73 6.02 -2.39 -0.01 1.71 16 Total: -1.00 -82.67 363.92 0.72 -81.96 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: 1.05 Total: 6.59 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 8.19 Total: 11.43 kcal Atomic # 7 Polarization: -108.47 SS G_CDS: -9.19 Total: -117.66 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: -0.05 Total: -28.72 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -1.31 Total: 0.89 kcal Total: -82.67 0.72 -81.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292593083.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.334 kcal (2) G-P(sol) polarization free energy of solvation -82.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds