Wall clock time and date at job start Sat Apr 11 2020 07:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99534 * 2 1 4 4 H 1.48501 * 109.47137 * 273.48192 * 3 2 1 5 5 H 1.48493 * 109.47301 * 33.48115 * 3 2 1 6 6 H 1.48495 * 109.47208 * 153.48083 * 3 2 1 7 7 C 1.38801 * 120.00446 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00037 * 343.43908 * 7 2 1 9 9 N 1.36943 * 120.00127 * 163.43852 * 7 2 1 10 10 C 1.46499 * 120.00043 * 317.48179 * 9 7 2 11 11 C 1.50699 * 109.47230 * 270.00258 * 10 9 7 12 12 O 1.21287 * 120.00041 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99827 * 179.97438 * 11 10 9 14 14 C 1.40049 * 119.99785 * 184.73331 * 13 11 10 15 15 C 1.38712 * 120.04288 * 22.80601 * 14 13 11 16 16 C 1.38718 * 119.88838 * 179.72092 * 15 14 13 17 17 N 1.40305 * 120.00919 * 180.29603 * 16 15 14 18 18 C 1.35051 * 127.38685 * 179.70356 * 17 16 15 19 19 N 1.30748 * 107.27685 * 179.90090 * 18 17 16 20 20 N 1.28422 * 110.64007 * 0.38057 * 19 18 17 21 21 N 1.28943 * 110.20642 * 359.76351 * 20 19 18 22 22 C 1.38848 * 119.98077 * 0.27017 * 16 15 14 23 23 C 1.38171 * 120.09459 * 0.02562 * 22 16 15 24 24 C 1.38345 * 120.10654 * 359.97438 * 23 22 16 25 25 F 1.35096 * 119.98751 * 180.02562 * 24 23 22 26 26 C 1.46503 * 119.99971 * 137.48387 * 9 7 2 27 27 C 1.53004 * 117.49873 * 13.04985 * 26 9 7 28 28 C 1.53001 * 117.49843 * 304.39392 * 26 9 7 29 29 H 0.96996 * 120.00412 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.46735 * 149.99954 * 10 9 7 31 31 H 1.09000 * 109.46808 * 30.00190 * 10 9 7 32 32 H 0.97001 * 120.00102 * 4.73937 * 13 11 10 33 33 H 1.07995 * 120.05927 * 359.97438 * 15 14 13 34 34 H 1.07997 * 126.36346 * 0.02562 * 18 17 16 35 35 H 1.07998 * 119.95621 * 179.97438 * 22 16 15 36 36 H 1.08002 * 119.94997 * 179.97438 * 23 22 16 37 37 H 1.09001 * 115.54825 * 158.71974 * 26 9 7 38 38 H 1.08998 * 117.49983 * 0.02562 * 27 26 9 39 39 H 1.09007 * 117.49876 * 145.01900 * 27 26 9 40 40 H 1.08997 * 117.49347 * 214.98084 * 28 26 9 41 41 H 1.09003 * 117.49972 * 359.97338 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4239 2.0891 -1.3975 5 1 1.4863 2.6303 0.7723 6 1 3.5825 1.4203 0.6251 7 6 2.0103 -1.2020 -0.0005 8 1 1.5040 -2.1181 0.2656 9 7 3.3371 -1.2264 -0.3386 10 6 3.8183 -0.4358 -1.4742 11 6 3.7421 -1.2638 -2.7310 12 8 3.3271 -2.4024 -2.6828 13 7 4.1351 -0.7390 -3.9086 14 6 3.9721 -1.4717 -5.0909 15 6 3.0220 -2.4802 -5.1576 16 6 2.8594 -3.2000 -6.3322 17 7 1.8948 -4.2164 -6.4044 18 6 1.6081 -5.0009 -7.4657 19 7 0.6495 -5.8119 -7.1013 20 7 0.3053 -5.5883 -5.8845 21 7 1.0153 -4.6325 -5.3893 22 6 3.6510 -2.9141 -7.4365 23 6 4.6014 -1.9136 -7.3673 24 6 4.7668 -1.1933 -6.1978 25 9 5.6964 -0.2152 -6.1329 26 6 4.2753 -2.0431 0.4354 27 6 3.6854 -3.0724 1.4016 28 6 4.3436 -1.8016 1.9446 29 1 -0.4850 0.8400 -0.0004 30 1 4.8518 -0.1378 -1.2975 31 1 3.1980 0.4534 -1.5867 32 1 4.5308 0.1462 -3.9372 33 1 2.4071 -2.7018 -4.2979 34 1 2.0837 -4.9662 -8.4347 35 1 3.5243 -3.4751 -8.3506 36 1 5.2161 -1.6934 -8.2275 37 1 5.2022 -2.3052 -0.0749 38 1 2.5993 -3.1422 1.4611 39 1 4.2244 -4.0115 1.5273 40 1 5.3154 -1.9051 2.4273 41 1 3.6908 -1.0347 2.3617 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351616053.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:44:03 Heat of formation + Delta-G solvation = 148.056368 kcal Electronic energy + Delta-G solvation = -29981.191867 eV Core-core repulsion = 25623.650212 eV Total energy + Delta-G solvation = -4357.541655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 346.129 amu Computer time = 2.78 seconds Orbital eigenvalues (eV) -49.22451 -43.31056 -40.50767 -38.84741 -37.10230 -35.53609 -34.21089 -33.54188 -32.44805 -31.58814 -30.61250 -29.68083 -26.98518 -25.21167 -24.49540 -23.91827 -22.46096 -22.21706 -21.52633 -20.51862 -19.77397 -19.14702 -18.03071 -17.55868 -16.77043 -16.72510 -16.53485 -16.19837 -16.01204 -15.72179 -15.55000 -15.21831 -14.60557 -14.19770 -13.84958 -13.81652 -13.71767 -13.55758 -13.33955 -13.04363 -12.60358 -12.42073 -12.38573 -12.22685 -11.98348 -11.60715 -11.25043 -11.14600 -10.93344 -10.66617 -10.61455 -10.55661 -10.27869 -10.19717 -9.66611 -9.51874 -9.34486 -8.93356 -8.69473 -8.29368 -6.85566 -6.12997 -3.65946 0.04766 0.78702 1.30364 1.57782 2.13820 2.81937 2.93290 3.06318 3.27921 3.31456 3.35787 3.76485 3.85128 3.96950 4.30371 4.36871 4.50219 4.58880 4.63904 4.80201 4.94219 4.99225 5.03167 5.22417 5.24462 5.51098 5.53020 5.68099 5.73634 5.75949 5.83513 5.86039 5.97202 6.03402 6.08492 6.29751 6.39564 6.42635 6.65890 6.88798 7.11090 7.37206 7.88740 8.27811 8.30478 8.40743 8.79813 9.49651 9.86397 11.00587 Molecular weight = 346.13amu Principal moments of inertia in cm(-1) A = 0.010272 B = 0.003716 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2725.263088 B = 7533.826924 C = 8640.620770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.040 3.960 3 Si 0.871 3.129 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.260 1.260 7 C -0.267 4.267 8 H 0.086 0.914 9 N -0.544 5.544 10 C 0.121 3.879 11 C 0.482 3.518 12 O -0.482 6.482 13 N -0.680 5.680 14 C 0.162 3.838 15 C -0.101 4.101 16 C 0.143 3.857 17 N -0.325 5.325 18 C 0.220 3.780 19 N -0.333 5.333 20 N -0.038 5.038 21 N -0.052 5.052 22 C -0.127 4.127 23 C -0.105 4.105 24 C 0.062 3.938 25 F -0.132 7.132 26 C 0.123 3.877 27 C -0.189 4.189 28 C -0.214 4.214 29 H 0.266 0.734 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.413 0.587 33 H 0.184 0.816 34 H 0.239 0.761 35 H 0.143 0.857 36 H 0.152 0.848 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.858 -0.971 -16.689 21.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.162 4.162 3 Si 0.700 3.300 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.184 1.184 7 C -0.396 4.396 8 H 0.104 0.896 9 N -0.260 5.260 10 C -0.010 4.010 11 C 0.269 3.731 12 O -0.352 6.352 13 N -0.326 5.326 14 C 0.063 3.937 15 C -0.123 4.123 16 C 0.049 3.951 17 N -0.115 5.115 18 C -0.077 4.077 19 N -0.181 5.181 20 N -0.033 5.033 21 N -0.037 5.037 22 C -0.150 4.150 23 C -0.125 4.125 24 C 0.039 3.961 25 F -0.110 7.110 26 C 0.015 3.985 27 C -0.227 4.227 28 C -0.255 4.255 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.250 0.750 33 H 0.201 0.799 34 H 0.255 0.745 35 H 0.160 0.840 36 H 0.170 0.830 37 H 0.111 0.889 38 H 0.121 0.879 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 11.349 -2.243 -15.535 19.369 hybrid contribution 1.398 2.115 -0.699 2.630 sum 12.747 -0.128 -16.233 20.640 Atomic orbital electron populations 1.69810 1.05907 1.26931 1.50294 1.25604 0.95187 0.97807 0.97613 0.87017 0.81163 0.84629 0.77202 1.21247 1.22178 1.18447 1.18749 0.82879 0.94164 1.43818 0.89638 1.43277 1.05681 1.51733 1.25291 1.21520 1.00246 0.94625 0.84618 1.23690 0.75657 0.89204 0.84588 1.90613 1.41261 1.18144 1.85163 1.44338 1.63097 1.20352 1.04812 1.17714 0.94187 0.95071 0.86768 1.21397 0.97820 0.94567 0.98539 1.17365 0.91080 0.90531 0.96084 1.49076 1.26484 1.25719 1.10235 1.27391 0.95601 0.88910 0.95804 1.74473 1.13586 1.23232 1.06837 1.78148 1.15862 1.07327 1.01933 1.82989 1.00628 1.10521 1.09523 1.20530 0.96960 1.00202 0.97283 1.20693 0.99300 0.95552 0.96985 1.17471 0.91207 0.92156 0.95296 1.91499 1.62935 1.59734 1.96854 1.21067 0.93471 0.97073 0.86891 1.23097 1.01673 0.92190 1.05751 1.23342 1.00925 1.00792 1.00393 0.92354 0.90172 0.89329 0.75028 0.79901 0.74530 0.83955 0.83000 0.88943 0.87885 0.90493 0.90633 0.88854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.31 13.97 55.49 0.78 -25.53 16 2 C 0.04 1.09 5.37 -17.43 -0.09 0.99 16 3 Si 0.87 20.09 24.94 -169.99 -4.24 15.85 16 4 H -0.28 -6.13 6.68 56.52 0.38 -5.75 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.27 -7.17 8.95 -15.06 -0.13 -7.31 16 8 H 0.09 2.58 6.75 -52.49 -0.35 2.23 16 9 N -0.54 -12.27 1.86 -167.02 -0.31 -12.58 16 10 C 0.12 2.32 4.97 -5.19 -0.03 2.29 16 11 C 0.48 8.93 7.73 -10.99 -0.08 8.84 16 12 O -0.48 -10.62 13.46 5.55 0.07 -10.55 16 13 N -0.68 -9.76 5.32 -9.82 -0.05 -9.81 16 14 C 0.16 2.20 6.47 -83.62 -0.54 1.66 16 15 C -0.10 -1.53 8.40 -39.23 -0.33 -1.86 16 16 C 0.14 1.72 6.70 -83.57 -0.56 1.16 16 17 N -0.32 -4.27 3.85 -11.75 -0.05 -4.32 16 18 C 0.22 2.18 12.15 -90.16 -1.10 1.09 16 19 N -0.33 -4.60 12.15 29.64 0.36 -4.24 16 20 N -0.04 -0.64 13.39 60.35 0.81 0.17 16 21 N -0.05 -0.90 13.33 60.35 0.80 -0.10 16 22 C -0.13 -0.97 9.48 -39.38 -0.37 -1.35 16 23 C -0.11 -0.80 10.01 -39.57 -0.40 -1.20 16 24 C 0.06 0.65 7.31 -39.23 -0.29 0.37 16 25 F -0.13 -1.36 16.79 2.25 0.04 -1.32 16 26 C 0.12 2.44 6.60 -67.93 -0.45 1.99 16 27 C -0.19 -3.66 9.86 -26.69 -0.26 -3.92 16 28 C -0.21 -3.97 10.19 -26.69 -0.27 -4.24 16 29 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 31 H 0.09 1.80 3.44 -51.93 -0.18 1.62 16 32 H 0.41 4.66 8.42 -40.82 -0.34 4.32 16 33 H 0.18 3.57 5.32 -52.49 -0.28 3.29 16 34 H 0.24 0.78 7.19 -52.49 -0.38 0.40 16 35 H 0.14 0.49 6.87 -52.49 -0.36 0.13 16 36 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 37 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 38 H 0.10 2.28 6.44 -51.93 -0.33 1.94 16 39 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.09 1.93 8.14 -51.93 -0.42 1.50 16 LS Contribution 355.59 15.07 5.36 5.36 Total: -1.00 -34.59 355.59 -5.25 -39.84 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -3.92 Total: 8.72 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -4.90 Total: -1.49 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: 2.34 Total: -56.42 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.07 Total: -10.55 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.24 Total: 15.85 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.59 -5.25 -39.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351616053.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.901 kcal (2) G-P(sol) polarization free energy of solvation -34.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.78 seconds