Wall clock time and date at job start Sat Apr 11 2020 07:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99534 * 2 1 4 4 H 1.48501 * 109.47137 * 273.48192 * 3 2 1 5 5 H 1.48493 * 109.47301 * 33.48115 * 3 2 1 6 6 H 1.48495 * 109.47208 * 153.48083 * 3 2 1 7 7 C 1.38801 * 120.00446 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00037 * 343.43908 * 7 2 1 9 9 N 1.36943 * 120.00127 * 163.43852 * 7 2 1 10 10 C 1.46499 * 120.00043 * 317.48179 * 9 7 2 11 11 C 1.50699 * 109.47230 * 270.00258 * 10 9 7 12 12 O 1.21287 * 120.00041 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99827 * 179.97438 * 11 10 9 14 14 C 1.40049 * 119.99785 * 184.73331 * 13 11 10 15 15 C 1.38712 * 120.04288 * 22.80601 * 14 13 11 16 16 C 1.38718 * 119.88838 * 179.72092 * 15 14 13 17 17 N 1.40305 * 120.00919 * 180.29603 * 16 15 14 18 18 C 1.35051 * 127.38685 * 179.70356 * 17 16 15 19 19 N 1.30748 * 107.27685 * 179.90090 * 18 17 16 20 20 N 1.28422 * 110.64007 * 0.38057 * 19 18 17 21 21 N 1.28943 * 110.20642 * 359.76351 * 20 19 18 22 22 C 1.38848 * 119.98077 * 0.27017 * 16 15 14 23 23 C 1.38171 * 120.09459 * 0.02562 * 22 16 15 24 24 C 1.38345 * 120.10654 * 359.97438 * 23 22 16 25 25 F 1.35096 * 119.98751 * 180.02562 * 24 23 22 26 26 C 1.46503 * 119.99971 * 137.48387 * 9 7 2 27 27 C 1.53004 * 117.49873 * 13.04985 * 26 9 7 28 28 C 1.53001 * 117.49843 * 304.39392 * 26 9 7 29 29 H 0.96996 * 120.00412 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.46735 * 149.99954 * 10 9 7 31 31 H 1.09000 * 109.46808 * 30.00190 * 10 9 7 32 32 H 0.97001 * 120.00102 * 4.73937 * 13 11 10 33 33 H 1.07995 * 120.05927 * 359.97438 * 15 14 13 34 34 H 1.07997 * 126.36346 * 0.02562 * 18 17 16 35 35 H 1.07998 * 119.95621 * 179.97438 * 22 16 15 36 36 H 1.08002 * 119.94997 * 179.97438 * 23 22 16 37 37 H 1.09001 * 115.54825 * 158.71974 * 26 9 7 38 38 H 1.08998 * 117.49983 * 0.02562 * 27 26 9 39 39 H 1.09007 * 117.49876 * 145.01900 * 27 26 9 40 40 H 1.08997 * 117.49347 * 214.98084 * 28 26 9 41 41 H 1.09003 * 117.49972 * 359.97338 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4239 2.0891 -1.3975 5 1 1.4863 2.6303 0.7723 6 1 3.5825 1.4203 0.6251 7 6 2.0103 -1.2020 -0.0005 8 1 1.5040 -2.1181 0.2656 9 7 3.3371 -1.2264 -0.3386 10 6 3.8183 -0.4358 -1.4742 11 6 3.7421 -1.2638 -2.7310 12 8 3.3271 -2.4024 -2.6828 13 7 4.1351 -0.7390 -3.9086 14 6 3.9721 -1.4717 -5.0909 15 6 3.0220 -2.4802 -5.1576 16 6 2.8594 -3.2000 -6.3322 17 7 1.8948 -4.2164 -6.4044 18 6 1.6081 -5.0009 -7.4657 19 7 0.6495 -5.8119 -7.1013 20 7 0.3053 -5.5883 -5.8845 21 7 1.0153 -4.6325 -5.3893 22 6 3.6510 -2.9141 -7.4365 23 6 4.6014 -1.9136 -7.3673 24 6 4.7668 -1.1933 -6.1978 25 9 5.6964 -0.2152 -6.1329 26 6 4.2753 -2.0431 0.4354 27 6 3.6854 -3.0724 1.4016 28 6 4.3436 -1.8016 1.9446 29 1 -0.4850 0.8400 -0.0004 30 1 4.8518 -0.1378 -1.2975 31 1 3.1980 0.4534 -1.5867 32 1 4.5308 0.1462 -3.9372 33 1 2.4071 -2.7018 -4.2979 34 1 2.0837 -4.9662 -8.4347 35 1 3.5243 -3.4751 -8.3506 36 1 5.2161 -1.6934 -8.2275 37 1 5.2022 -2.3052 -0.0749 38 1 2.5993 -3.1422 1.4611 39 1 4.2244 -4.0115 1.5273 40 1 5.3154 -1.9051 2.4273 41 1 3.6908 -1.0347 2.3617 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351616053.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:43:59 Heat of formation + Delta-G solvation = 122.714343 kcal Electronic energy + Delta-G solvation = -29982.290780 eV Core-core repulsion = 25623.650212 eV Total energy + Delta-G solvation = -4358.640568 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 346.129 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -50.03606 -44.33439 -41.67572 -39.99243 -38.68066 -36.67809 -35.31001 -35.27562 -33.54569 -33.42685 -31.63202 -30.68787 -28.56265 -26.22164 -26.08671 -25.10550 -23.52510 -23.22470 -23.03844 -21.79461 -21.48477 -20.20797 -19.07126 -18.70269 -18.15653 -17.82376 -17.76784 -17.45239 -17.12355 -16.98797 -16.75044 -16.55859 -15.98932 -15.40160 -15.26306 -14.93717 -14.78017 -14.59739 -14.52453 -14.33474 -14.13072 -13.96414 -13.75624 -13.40277 -13.04986 -12.91349 -12.70517 -12.64818 -12.22528 -12.18151 -12.00002 -11.90080 -11.70391 -11.60927 -11.52542 -11.06972 -10.80639 -10.68959 -9.88173 -9.26123 -8.68523 -8.23348 -5.76582 -0.84799 -0.07193 0.36345 0.69625 1.14748 1.21396 1.38968 1.48809 1.59968 1.80308 2.34795 2.37441 2.88724 2.95920 2.99638 3.07693 3.29190 3.31873 3.62387 3.63442 3.81838 3.90168 4.08063 4.18558 4.21426 4.22191 4.29076 4.30348 4.36175 4.52327 4.57642 4.81207 4.85963 4.89490 4.94394 5.05594 5.11695 5.26417 5.36057 5.51280 5.70471 5.86293 6.18179 6.24944 6.84798 7.10130 7.22859 7.48259 7.87389 8.94986 Molecular weight = 346.13amu Principal moments of inertia in cm(-1) A = 0.010272 B = 0.003716 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2725.263088 B = 7533.826924 C = 8640.620770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.024 4.024 3 Si 0.946 3.054 4 H -0.256 1.256 5 H -0.307 1.307 6 H -0.235 1.235 7 C -0.255 4.255 8 H 0.025 0.975 9 N -0.560 5.560 10 C 0.115 3.885 11 C 0.484 3.516 12 O -0.530 6.530 13 N -0.668 5.668 14 C 0.132 3.868 15 C -0.135 4.135 16 C 0.125 3.875 17 N -0.326 5.326 18 C 0.249 3.751 19 N -0.358 5.358 20 N -0.066 5.066 21 N -0.115 5.115 22 C -0.091 4.091 23 C -0.084 4.084 24 C 0.074 3.926 25 F -0.127 7.127 26 C 0.110 3.890 27 C -0.202 4.202 28 C -0.191 4.191 29 H 0.265 0.735 30 H 0.129 0.871 31 H 0.079 0.921 32 H 0.428 0.572 33 H 0.129 0.871 34 H 0.311 0.689 35 H 0.204 0.796 36 H 0.204 0.796 37 H 0.125 0.875 38 H 0.059 0.941 39 H 0.105 0.895 40 H 0.118 0.882 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.891 0.490 -21.248 27.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.221 4.221 3 Si 0.771 3.229 4 H -0.182 1.182 5 H -0.235 1.235 6 H -0.158 1.158 7 C -0.385 4.385 8 H 0.042 0.958 9 N -0.277 5.277 10 C -0.015 4.015 11 C 0.271 3.729 12 O -0.404 6.404 13 N -0.315 5.315 14 C 0.034 3.966 15 C -0.157 4.157 16 C 0.032 3.968 17 N -0.116 5.116 18 C -0.046 4.046 19 N -0.207 5.207 20 N -0.061 5.061 21 N -0.100 5.100 22 C -0.112 4.112 23 C -0.103 4.103 24 C 0.051 3.949 25 F -0.105 7.105 26 C 0.003 3.997 27 C -0.241 4.241 28 C -0.231 4.231 29 H 0.074 0.926 30 H 0.147 0.853 31 H 0.097 0.903 32 H 0.267 0.733 33 H 0.146 0.854 34 H 0.326 0.674 35 H 0.221 0.779 36 H 0.221 0.779 37 H 0.142 0.858 38 H 0.077 0.923 39 H 0.124 0.876 40 H 0.136 0.864 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 16.452 -0.761 -20.146 26.021 hybrid contribution -0.100 1.520 0.492 1.601 sum 16.353 0.759 -19.654 25.579 Atomic orbital electron populations 1.70003 1.08270 1.27808 1.53416 1.26378 0.95845 1.02196 0.97644 0.85815 0.80121 0.78326 0.78618 1.18239 1.23524 1.15830 1.18373 0.84928 0.92193 1.42988 0.95765 1.43290 1.04360 1.52685 1.27342 1.21624 1.02467 0.93496 0.83893 1.23234 0.75405 0.88456 0.85828 1.90639 1.43488 1.20177 1.86064 1.43809 1.62471 1.20955 1.04294 1.17775 0.95739 0.95704 0.87403 1.21016 0.98947 0.97082 0.98702 1.17700 0.91989 0.90386 0.96704 1.49140 1.26117 1.26236 1.10151 1.28714 0.93400 0.85839 0.96636 1.74363 1.15433 1.24949 1.05983 1.78128 1.16706 1.07774 1.03491 1.82970 1.02841 1.11941 1.12255 1.21207 0.93804 0.99024 0.97148 1.21314 0.98597 0.93537 0.96868 1.17604 0.90222 0.92073 0.95014 1.91522 1.62563 1.59604 1.96844 1.21405 0.93926 0.96744 0.87646 1.23040 0.99569 0.94263 1.07201 1.23316 1.01916 0.98663 0.99226 0.92625 0.85305 0.90342 0.73257 0.85353 0.67405 0.77945 0.77929 0.85779 0.92273 0.87644 0.86374 0.91436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.78 13.97 21.65 0.30 -60.48 16 2 C -0.02 -1.42 5.37 84.86 0.46 -0.96 16 3 Si 0.95 42.52 24.94 68.60 1.71 44.23 16 4 H -0.26 -10.23 6.68 99.48 0.66 -9.57 16 5 H -0.31 -14.33 7.11 99.48 0.71 -13.63 16 6 H -0.24 -9.55 7.11 99.48 0.71 -8.84 16 7 C -0.25 -14.77 8.95 84.03 0.75 -14.02 16 8 H 0.02 1.67 6.75 -2.91 -0.02 1.65 16 9 N -0.56 -26.02 1.86 -682.34 -1.27 -27.28 16 10 C 0.11 4.33 4.97 85.63 0.43 4.76 16 11 C 0.48 18.40 7.73 87.66 0.68 19.08 16 12 O -0.53 -25.19 13.46 -3.05 -0.04 -25.24 16 13 N -0.67 -18.85 5.32 -303.38 -1.62 -20.46 16 14 C 0.13 3.46 6.47 38.14 0.25 3.71 16 15 C -0.13 -4.24 8.40 22.50 0.19 -4.05 16 16 C 0.12 2.77 6.70 38.05 0.25 3.03 16 17 N -0.33 -8.32 3.85 -191.09 -0.74 -9.06 16 18 C 0.25 4.14 12.15 180.19 2.19 6.33 16 19 N -0.36 -9.67 12.15 -60.14 -0.73 -10.40 16 20 N -0.07 -2.38 13.39 37.02 0.50 -1.88 16 21 N -0.11 -4.31 13.33 37.02 0.49 -3.82 16 22 C -0.09 -0.82 9.48 22.40 0.21 -0.60 16 23 C -0.08 -0.71 10.01 22.28 0.22 -0.49 16 24 C 0.07 1.26 7.31 22.50 0.16 1.42 16 25 F -0.13 -2.05 16.79 44.97 0.75 -1.29 16 26 C 0.11 4.35 6.60 44.99 0.30 4.65 16 27 C -0.20 -8.18 9.86 30.62 0.30 -7.88 16 28 C -0.19 -6.94 10.19 30.62 0.31 -6.63 16 29 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 30 H 0.13 3.55 8.07 -2.39 -0.02 3.53 16 31 H 0.08 3.12 3.44 -2.39 -0.01 3.11 16 32 H 0.43 8.88 8.42 -92.71 -0.78 8.09 16 33 H 0.13 5.61 5.32 -2.91 -0.02 5.59 16 34 H 0.31 -0.29 7.19 -2.91 -0.02 -0.31 16 35 H 0.20 -0.59 6.87 -2.91 -0.02 -0.61 16 36 H 0.20 -0.12 8.06 -2.91 -0.02 -0.15 16 37 H 0.12 4.12 8.14 -2.39 -0.02 4.10 16 38 H 0.06 2.91 6.44 -2.39 -0.02 2.90 16 39 H 0.11 3.59 8.14 -2.38 -0.02 3.57 16 40 H 0.12 3.30 8.14 -2.39 -0.02 3.28 16 41 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 Total: -1.00 -93.11 355.59 6.38 -86.73 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: 0.31 Total: 20.61 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 6.70 Total: 8.34 kcal Atomic # 7 Polarization: -130.33 SS G_CDS: -3.06 Total: -133.39 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.04 Total: -25.24 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.75 Total: -1.29 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 1.71 Total: 44.23 kcal Total: -93.11 6.38 -86.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351616053.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.447 kcal (2) G-P(sol) polarization free energy of solvation -93.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds