Wall clock time and date at job start Sat Apr 11 2020 07:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99859 * 2 1 4 4 H 1.48496 * 109.47180 * 271.64159 * 3 2 1 5 5 H 1.48504 * 109.47138 * 31.64064 * 3 2 1 6 6 H 1.48497 * 109.47088 * 151.64076 * 3 2 1 7 7 C 1.37871 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99918 * 359.34308 * 7 2 1 9 9 C 1.50704 * 120.00041 * 179.34651 * 7 2 1 10 10 C 1.53000 * 115.55003 * 87.84764 * 9 7 2 11 11 N 1.46500 * 109.47234 * 67.31658 * 10 9 7 12 12 C 1.34770 * 120.00427 * 175.38593 * 11 10 9 13 13 O 1.21595 * 120.00029 * 5.50413 * 12 11 10 14 14 N 1.34777 * 120.00374 * 185.50586 * 12 11 10 15 15 C 1.40076 * 120.00278 * 183.47545 * 14 12 11 16 16 C 1.38704 * 120.04300 * 333.72434 * 15 14 12 17 17 C 1.38723 * 119.89135 * 179.72007 * 16 15 14 18 18 N 1.40308 * 120.00776 * 180.30127 * 17 16 15 19 19 C 1.35054 * 127.38795 * 179.70919 * 18 17 16 20 20 N 1.30744 * 107.27910 * 179.87218 * 19 18 17 21 21 N 1.28423 * 110.63914 * 0.41390 * 20 19 18 22 22 N 1.28939 * 110.20621 * 359.73501 * 21 20 19 23 23 C 1.38843 * 119.97887 * 0.28561 * 17 16 15 24 24 C 1.38176 * 120.09228 * 0.02562 * 23 17 16 25 25 C 1.38333 * 120.10642 * 359.97438 * 24 23 17 26 26 F 1.35097 * 119.98692 * 179.97438 * 25 24 23 27 27 C 1.52995 * 117.50082 * 233.51956 * 9 7 2 28 28 C 1.52992 * 117.49974 * 302.18002 * 9 7 2 29 29 H 0.97001 * 120.00029 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.47431 * 307.31921 * 10 9 7 31 31 H 1.09000 * 109.47513 * 187.31800 * 10 9 7 32 32 H 0.97006 * 119.99832 * 355.38729 * 11 10 9 33 33 H 0.97002 * 119.99776 * 3.46789 * 14 12 11 34 34 H 1.08002 * 120.05474 * 0.02562 * 16 15 14 35 35 H 1.08005 * 126.35856 * 359.97438 * 19 18 17 36 36 H 1.08006 * 119.95425 * 179.97438 * 23 17 16 37 37 H 1.08004 * 119.94535 * 179.97438 * 24 23 17 38 38 H 1.08996 * 117.50064 * 215.00649 * 27 9 7 39 39 H 1.09009 * 117.49728 * 0.02562 * 27 9 7 40 40 H 1.09003 * 117.49908 * 359.97438 * 28 9 7 41 41 H 1.08999 * 117.50463 * 144.97271 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4619 2.0666 -1.3995 5 1 1.4643 2.6425 0.7345 6 1 3.5636 1.4305 0.6650 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 0.0098 9 6 3.5115 -1.1940 -0.0154 10 6 4.1849 -1.1349 1.3571 11 7 3.9222 -2.3794 2.0840 12 6 4.4960 -2.5927 3.2847 13 8 5.1506 -1.7131 3.8105 14 7 4.3444 -3.7808 3.9026 15 6 4.8790 -3.9780 5.1822 16 6 5.9758 -3.2379 5.5982 17 6 6.4992 -3.4316 6.8682 18 7 7.6047 -2.6798 7.2938 19 6 8.2267 -2.7417 8.4910 20 7 9.2059 -1.8757 8.4652 21 7 9.2400 -1.2645 7.3362 22 7 8.2989 -1.6959 6.5676 23 6 5.9284 -4.3695 7.7181 24 6 4.8398 -5.1110 7.3006 25 6 4.3150 -4.9208 6.0349 26 9 3.2509 -5.6474 5.6290 27 6 4.2072 -2.0066 -1.1093 28 6 4.2065 -0.4773 -1.1747 29 1 -0.4850 0.8401 0.0004 30 1 3.7852 -0.2929 1.9221 31 1 5.2601 -1.0090 1.2292 32 1 3.3351 -3.0501 1.7011 33 1 3.8649 -4.4993 3.4613 34 1 6.4187 -2.5084 4.9362 35 1 7.9649 -3.3878 9.3159 36 1 6.3365 -4.5203 8.7067 37 1 4.3980 -5.8402 7.9635 38 1 5.1446 -2.4992 -0.8511 39 1 3.5748 -2.5409 -1.8185 40 1 3.5738 -0.0061 -1.9269 41 1 5.1433 0.0366 -0.9596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000370551529.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:44:12 Heat of formation + Delta-G solvation = 119.340867 kcal Electronic energy + Delta-G solvation = -29236.121201 eV Core-core repulsion = 24877.334348 eV Total energy + Delta-G solvation = -4358.786853 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 346.129 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.30574 -43.47343 -40.78986 -39.21089 -37.34851 -35.76441 -34.40173 -33.82981 -32.59876 -32.20876 -30.68725 -29.72853 -26.80132 -25.38564 -25.34033 -24.29146 -22.60646 -22.36688 -21.83362 -20.77857 -19.50619 -19.27794 -18.33544 -17.87460 -17.24783 -16.90733 -16.46174 -16.41448 -16.10449 -15.95784 -15.41391 -15.00512 -14.64448 -14.45746 -14.20488 -14.02034 -13.86466 -13.61082 -13.36348 -13.22423 -12.88621 -12.60050 -12.56690 -12.30569 -12.11420 -11.77285 -11.32087 -11.22889 -10.93145 -10.80896 -10.75414 -10.58378 -10.26499 -10.00602 -9.69506 -9.30680 -9.10857 -8.80161 -8.68064 -8.65729 -8.31672 -6.23508 -4.29412 -0.09642 0.66474 1.15574 1.41717 1.97692 2.44593 2.89953 3.23535 3.32945 3.34903 3.39363 3.62358 3.72480 3.82813 4.18774 4.24722 4.33222 4.40498 4.48928 4.80640 4.84818 4.87136 5.05014 5.06443 5.23442 5.39879 5.55031 5.60354 5.71783 5.86878 5.92407 5.97174 6.09524 6.13373 6.29184 6.34677 6.48592 6.60871 6.78997 6.85748 6.98191 7.00023 7.58750 8.06054 8.10961 8.31746 8.58607 8.75532 9.39200 10.87568 Molecular weight = 346.13amu Principal moments of inertia in cm(-1) A = 0.012511 B = 0.002820 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.422332 B = 9925.784067 C =11192.985678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.081 3.919 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.257 1.257 7 C -0.495 4.495 8 H 0.078 0.922 9 C -0.017 4.017 10 C 0.172 3.828 11 N -0.706 5.706 12 C 0.698 3.302 13 O -0.575 6.575 14 N -0.682 5.682 15 C 0.177 3.823 16 C -0.098 4.098 17 C 0.138 3.862 18 N -0.323 5.323 19 C 0.223 3.777 20 N -0.332 5.332 21 N -0.038 5.038 22 N -0.059 5.059 23 C -0.123 4.123 24 C -0.105 4.105 25 C 0.070 3.930 26 F -0.128 7.128 27 C -0.178 4.178 28 C -0.190 4.190 29 H 0.266 0.734 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.405 0.595 33 H 0.415 0.585 34 H 0.186 0.814 35 H 0.240 0.760 36 H 0.144 0.856 37 H 0.155 0.845 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.699 -13.811 15.412 23.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.123 4.123 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.181 1.181 7 C -0.532 4.532 8 H 0.096 0.904 9 C -0.018 4.018 10 C 0.048 3.952 11 N -0.358 5.358 12 C 0.399 3.601 13 O -0.453 6.453 14 N -0.328 5.328 15 C 0.077 3.923 16 C -0.120 4.120 17 C 0.045 3.955 18 N -0.113 5.113 19 C -0.074 4.074 20 N -0.181 5.181 21 N -0.033 5.033 22 N -0.044 5.044 23 C -0.145 4.145 24 C -0.125 4.125 25 C 0.047 3.953 26 F -0.107 7.107 27 C -0.215 4.215 28 C -0.228 4.228 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.240 0.760 33 H 0.252 0.748 34 H 0.203 0.797 35 H 0.256 0.744 36 H 0.162 0.838 37 H 0.172 0.828 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.906 -11.778 15.130 22.570 hybrid contribution -1.207 -0.554 -0.235 1.348 sum 10.699 -12.333 14.895 22.100 Atomic orbital electron populations 1.69879 1.06417 1.27395 1.49283 1.24977 0.94601 0.99217 0.93474 0.86850 0.80764 0.83231 0.78481 1.20351 1.21982 1.18069 1.20173 0.85978 0.94534 1.52474 0.90389 1.19608 0.95325 1.01088 0.85812 1.21173 0.97518 0.84104 0.92370 1.45092 1.49704 1.23053 1.17932 1.15985 0.80958 0.81465 0.81730 1.90857 1.45413 1.43458 1.65608 1.42630 1.58911 1.15521 1.15770 1.17256 0.93143 0.96330 0.85592 1.21449 0.94004 1.01103 0.95478 1.17361 0.87942 0.94697 0.95491 1.49042 1.23100 1.27658 1.11527 1.27424 0.90559 0.98940 0.90509 1.74484 1.19209 1.09119 1.15250 1.78126 1.12024 1.16318 0.96867 1.82886 1.03734 1.01110 1.16695 1.20569 0.97585 0.96404 0.99950 1.20720 0.96531 1.01045 0.94212 1.17472 0.88112 0.96161 0.93598 1.91532 1.53011 1.75540 1.90585 1.22852 1.01038 0.93177 1.04439 1.22960 1.01428 0.94893 1.03530 0.92379 0.91541 0.93291 0.76017 0.74838 0.79694 0.74430 0.83846 0.82753 0.90869 0.89340 0.89047 0.90582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.88 13.96 55.43 0.77 -25.10 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 3 Si 0.88 20.94 24.80 -169.99 -4.22 16.73 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.26 -5.85 5.86 56.52 0.33 -5.52 16 7 C -0.49 -12.49 9.29 -34.44 -0.32 -12.81 16 8 H 0.08 2.12 8.06 -52.48 -0.42 1.70 16 9 C -0.02 -0.35 0.81 -155.67 -0.13 -0.48 16 10 C 0.17 3.40 5.10 -4.04 -0.02 3.38 16 11 N -0.71 -11.94 5.50 -65.23 -0.36 -12.30 16 12 C 0.70 11.45 8.44 -86.92 -0.73 10.72 16 13 O -0.58 -11.22 13.32 5.28 0.07 -11.15 16 14 N -0.68 -8.50 5.31 -14.18 -0.08 -8.57 16 15 C 0.18 2.06 6.45 -83.61 -0.54 1.52 16 16 C -0.10 -1.23 8.43 -39.23 -0.33 -1.56 16 17 C 0.14 1.37 6.70 -83.57 -0.56 0.81 16 18 N -0.32 -3.51 3.86 -11.75 -0.05 -3.56 16 19 C 0.22 1.79 12.15 -90.16 -1.10 0.69 16 20 N -0.33 -3.94 12.15 29.64 0.36 -3.58 16 21 N -0.04 -0.56 13.39 60.35 0.81 0.25 16 22 N -0.06 -0.86 13.33 60.35 0.80 -0.06 16 23 C -0.12 -0.73 9.48 -39.38 -0.37 -1.11 16 24 C -0.11 -0.66 10.01 -39.57 -0.40 -1.05 16 25 C 0.07 0.65 7.30 -39.24 -0.29 0.36 16 26 F -0.13 -1.24 16.82 2.25 0.04 -1.20 16 27 C -0.18 -3.22 9.96 -26.70 -0.27 -3.48 16 28 C -0.19 -3.74 7.49 -26.70 -0.20 -3.94 16 29 H 0.27 7.32 8.31 -40.82 -0.34 6.99 16 30 H 0.07 1.48 6.96 -51.93 -0.36 1.12 16 31 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 32 H 0.40 6.22 8.43 -40.82 -0.34 5.88 16 33 H 0.42 4.07 8.50 -40.82 -0.35 3.72 16 34 H 0.19 2.94 5.29 -52.49 -0.28 2.66 16 35 H 0.24 0.40 7.19 -52.48 -0.38 0.02 16 36 H 0.14 0.27 6.87 -52.48 -0.36 -0.09 16 37 H 0.15 0.51 8.06 -52.48 -0.42 0.09 16 38 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 40 H 0.09 1.90 7.13 -51.93 -0.37 1.53 16 41 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 356.90 15.07 5.38 5.38 Total: -1.00 -33.40 356.90 -5.98 -39.39 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -4.18 Total: 8.65 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -5.35 Total: -4.88 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: 2.27 Total: -52.91 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.07 Total: -11.15 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 0.04 Total: -1.20 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.22 Total: 16.73 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.40 -5.98 -39.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370551529.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.726 kcal (2) G-P(sol) polarization free energy of solvation -33.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds