Wall clock time and date at job start Sat Apr 11 2020 07:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31566 * 1 3 3 Si 1.86792 * 120.00354 * 2 1 4 4 H 1.48496 * 109.47201 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47463 * 300.00395 * 3 2 1 6 6 H 1.48501 * 109.47188 * 60.00106 * 3 2 1 7 7 C 1.38658 * 119.99263 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99358 * 180.02562 * 7 2 1 9 9 O 1.34828 * 120.00538 * 359.97438 * 7 2 1 10 10 C 1.35748 * 117.00223 * 185.05503 * 9 7 2 11 11 C 1.38903 * 120.06719 * 354.46949 * 10 9 7 12 12 C 1.38071 * 119.92886 * 179.97438 * 11 10 9 13 13 C 1.38325 * 120.07224 * 359.97438 * 12 11 10 14 14 C 1.38279 * 120.13636 * 0.02562 * 13 12 11 15 15 C 1.50706 * 119.96772 * 180.02562 * 14 13 12 16 16 C 1.50695 * 109.47049 * 89.99784 * 15 14 13 17 17 O 1.21284 * 120.00300 * 359.97438 * 16 15 14 18 18 N 1.34781 * 120.00087 * 180.02562 * 16 15 14 19 19 C 1.46817 * 120.12091 * 359.97438 * 18 16 15 20 20 C 1.53717 * 109.05650 * 236.26782 * 19 18 16 21 21 N 1.46957 * 107.38719 * 313.89646 * 20 19 18 22 22 C 1.33399 * 128.36615 * 233.38720 * 21 20 19 23 23 O 1.21500 * 123.19765 * 350.44550 * 22 21 20 24 24 O 1.33992 * 113.60221 * 170.44435 * 22 21 20 25 25 C 1.45836 * 109.47587 * 3.85666 * 24 22 21 26 26 C 1.47892 * 122.82180 * 51.94682 * 21 20 19 27 27 H 1.08994 * 111.64358 * 69.92589 * 26 21 20 28 28 C 1.47095 * 120.12813 * 179.72224 * 18 16 15 29 29 C 1.38124 * 120.06866 * 0.27208 * 14 13 12 30 30 H 0.97007 * 119.99215 * 359.97438 * 1 2 3 31 31 H 1.08001 * 120.03372 * 359.97415 * 11 10 9 32 32 H 1.08001 * 119.96716 * 180.02562 * 12 11 10 33 33 H 1.08004 * 119.93679 * 180.02562 * 13 12 11 34 34 H 1.08996 * 109.47316 * 209.99967 * 15 14 13 35 35 H 1.09005 * 109.46714 * 330.00046 * 15 14 13 36 36 H 1.08996 * 109.54714 * 356.14614 * 19 18 16 37 37 H 1.09008 * 109.53894 * 116.39926 * 19 18 16 38 38 H 1.09003 * 109.86958 * 73.36304 * 20 19 18 39 39 H 1.09000 * 109.87928 * 194.35499 * 20 19 18 40 40 H 1.08998 * 110.52325 * 120.62905 * 25 24 22 41 41 H 1.09000 * 110.52353 * 243.23634 * 25 24 22 42 42 H 1.09001 * 109.74313 * 242.25801 * 28 18 16 43 43 H 1.09001 * 109.74384 * 2.97258 * 28 18 16 44 44 H 1.08000 * 120.03303 * 179.71047 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.7097 1.3462 -0.0006 5 1 1.8910 2.3964 -1.2124 6 1 1.8910 2.3963 1.2125 7 6 2.0088 -1.2009 -0.0005 8 1 3.0888 -1.2009 -0.0001 9 8 1.3346 -2.3685 -0.0005 10 6 2.0698 -3.5047 0.1055 11 6 3.4573 -3.4396 0.0921 12 6 4.2023 -4.5970 0.2006 13 6 3.5684 -5.8204 0.3232 14 6 2.1874 -5.8885 0.3369 15 6 1.5008 -7.2233 0.4712 16 6 1.2792 -7.5297 1.9299 17 8 1.6433 -6.7419 2.7772 18 7 0.6772 -8.6796 2.2932 19 6 0.2358 -9.6353 1.2699 20 6 -1.2668 -9.9050 1.4499 21 7 -1.5029 -10.1374 2.8816 22 6 -2.1093 -11.1734 3.4634 23 8 -2.7152 -12.0240 2.8424 24 8 -1.9867 -11.1868 4.7976 25 6 -1.2844 -9.9853 5.2334 26 6 -1.0418 -9.2039 3.9319 27 1 -1.6036 -8.2700 3.9146 28 6 0.4649 -8.9842 3.7165 29 6 1.4365 -4.7349 0.2225 30 1 -0.4849 0.8402 0.0004 31 1 3.9527 -2.4847 -0.0032 32 1 5.2811 -4.5471 0.1907 33 1 4.1534 -6.7243 0.4084 34 1 0.5405 -7.1913 -0.0433 35 1 2.1250 -7.9992 0.0277 36 1 0.4151 -9.2176 0.2792 37 1 0.7892 -10.5681 1.3792 38 1 -1.8410 -9.0411 1.1151 39 1 -1.5563 -10.7865 0.8777 40 1 -1.9056 -9.4062 5.9166 41 1 -0.3380 -10.2464 5.7070 42 1 1.0132 -9.8870 3.9856 43 1 0.8078 -8.1488 4.3270 44 1 0.3578 -4.7892 0.2285 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378310638.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:44:14 Heat of formation + Delta-G solvation = -108.982396 kcal Electronic energy + Delta-G solvation = -29778.253361 eV Core-core repulsion = 25468.440472 eV Total energy + Delta-G solvation = -4309.812889 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.141 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.89683 -41.22536 -40.48207 -38.55592 -38.32974 -37.85164 -35.15160 -34.33807 -33.72045 -32.94362 -30.88531 -29.77563 -28.92199 -27.37688 -26.60643 -25.06584 -23.49795 -23.19256 -22.77022 -22.10416 -20.19114 -19.39137 -18.75858 -18.69431 -18.29341 -17.93618 -17.48325 -17.00139 -16.83021 -16.61029 -16.26571 -16.07694 -15.99957 -15.48986 -15.33375 -15.07945 -14.97801 -14.82792 -14.50336 -14.45617 -14.22999 -13.99400 -13.58722 -13.37550 -13.04754 -12.90692 -12.80140 -12.64163 -12.60000 -12.45899 -12.27633 -12.19953 -12.07762 -11.80863 -11.75836 -11.18701 -10.95785 -10.79094 -10.57230 -9.61428 -9.56835 -8.95541 -8.46780 -6.14676 0.53567 0.78009 1.27721 1.34455 1.42903 1.48699 1.52759 1.63740 1.90843 2.17790 2.47494 2.84042 3.14188 3.18338 3.35227 3.45371 3.51531 3.74500 3.88006 3.93097 3.99309 4.11493 4.13920 4.33074 4.36748 4.42689 4.46541 4.53228 4.57133 4.60523 4.65800 4.69802 4.76075 4.76489 4.90478 5.08290 5.14499 5.27906 5.32733 5.38162 5.67222 5.74918 5.77572 6.04034 6.17385 6.22591 6.31001 6.84153 6.98486 7.14001 7.80321 8.76962 Molecular weight = 346.14amu Principal moments of inertia in cm(-1) A = 0.018054 B = 0.002189 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.567051 B =12787.142405 C =13440.152287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.018 2.982 4 H -0.252 1.252 5 H -0.267 1.267 6 H -0.269 1.269 7 C -0.411 4.411 8 H 0.100 0.900 9 O -0.234 6.234 10 C 0.111 3.889 11 C -0.247 4.247 12 C -0.075 4.075 13 C -0.179 4.179 14 C -0.025 4.025 15 C -0.093 4.093 16 C 0.520 3.480 17 O -0.569 6.569 18 N -0.614 5.614 19 C 0.091 3.909 20 C 0.124 3.876 21 N -0.622 5.622 22 C 0.646 3.354 23 O -0.571 6.571 24 O -0.344 6.344 25 C 0.047 3.953 26 C 0.078 3.922 27 H 0.113 0.887 28 C 0.108 3.892 29 C -0.190 4.190 30 H 0.272 0.728 31 H 0.115 0.885 32 H 0.143 0.857 33 H 0.148 0.852 34 H 0.125 0.875 35 H 0.146 0.854 36 H 0.133 0.867 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.113 0.887 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.097 0.903 43 H 0.101 0.899 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.263 -22.170 5.446 23.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.176 1.176 5 H -0.192 1.192 6 H -0.194 1.194 7 C -0.488 4.488 8 H 0.117 0.883 9 O -0.142 6.142 10 C 0.061 3.939 11 C -0.267 4.267 12 C -0.093 4.093 13 C -0.197 4.197 14 C -0.026 4.026 15 C -0.132 4.132 16 C 0.310 3.690 17 O -0.447 6.447 18 N -0.348 5.348 19 C -0.031 4.031 20 C 0.004 3.996 21 N -0.369 5.369 22 C 0.400 3.600 23 O -0.460 6.460 24 O -0.254 6.254 25 C -0.027 4.027 26 C -0.026 4.026 27 H 0.131 0.869 28 C -0.016 4.016 29 C -0.209 4.209 30 H 0.081 0.919 31 H 0.133 0.867 32 H 0.161 0.839 33 H 0.165 0.835 34 H 0.143 0.857 35 H 0.164 0.836 36 H 0.151 0.849 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.131 0.869 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.116 0.884 43 H 0.120 0.880 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.668 -22.208 5.696 23.082 hybrid contribution -0.096 1.332 0.075 1.337 sum 2.572 -20.877 5.771 21.812 Atomic orbital electron populations 1.70197 1.07973 1.28629 1.49243 1.26577 0.96880 1.02682 0.96001 0.84534 0.78213 0.74906 0.78585 1.17561 1.19158 1.19444 1.21836 0.92440 0.81528 1.52959 0.88315 1.83929 1.35897 1.12546 1.81780 1.19898 0.91622 0.87995 0.94391 1.21293 0.93233 1.00160 1.11985 1.21125 1.00165 0.91572 0.96419 1.20972 0.93589 0.98051 1.07130 1.19184 0.93649 0.93058 0.96687 1.20782 1.04323 0.95203 0.92848 1.20972 0.76255 0.80087 0.91701 1.90766 1.51504 1.48288 1.54107 1.48074 1.59704 1.19642 1.07412 1.22487 0.93332 0.94037 0.93271 1.22249 0.96656 1.04131 0.76567 1.48323 1.58528 1.21317 1.08774 1.18376 0.78569 0.81877 0.81139 1.91004 1.47174 1.43385 1.64403 1.87340 1.73254 1.44336 1.20466 1.24648 1.00568 0.82039 0.95423 1.23311 0.97148 0.94967 0.87203 0.86926 1.22180 0.92894 1.03705 0.82795 1.20211 0.99292 0.90333 1.11107 0.91906 0.86727 0.83923 0.83458 0.85695 0.83619 0.84930 0.88678 0.89410 0.86930 0.84705 0.84682 0.88447 0.88039 0.87448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.16 13.67 21.62 0.30 -56.87 16 2 C -0.02 -1.40 5.49 84.83 0.47 -0.94 16 3 Si 1.02 43.44 29.55 68.60 2.03 45.47 16 4 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 7 C -0.41 -24.40 9.49 67.92 0.64 -23.76 16 8 H 0.10 5.42 5.20 -2.91 -0.02 5.40 16 9 O -0.23 -14.36 9.76 -22.70 -0.22 -14.59 16 10 C 0.11 5.62 6.65 22.58 0.15 5.77 16 11 C -0.25 -11.03 9.17 22.39 0.21 -10.82 16 12 C -0.07 -2.59 10.04 22.25 0.22 -2.36 16 13 C -0.18 -5.38 9.70 22.30 0.22 -5.17 16 14 C -0.03 -0.79 4.37 -19.88 -0.09 -0.88 16 15 C -0.09 -1.73 4.15 29.10 0.12 -1.61 16 16 C 0.52 11.39 7.68 87.65 0.67 12.07 16 17 O -0.57 -18.82 15.40 -3.04 -0.05 -18.87 16 18 N -0.61 -8.53 2.91 -816.57 -2.38 -10.90 16 19 C 0.09 0.66 6.49 86.56 0.56 1.22 16 20 C 0.12 1.28 7.10 86.53 0.61 1.90 16 21 N -0.62 -9.12 2.98 -923.21 -2.75 -11.88 16 22 C 0.65 13.84 8.88 130.01 1.15 14.99 16 23 O -0.57 -17.04 17.64 19.66 0.35 -16.70 16 24 O -0.34 -6.19 11.10 -49.39 -0.55 -6.74 16 25 C 0.05 0.37 7.83 72.23 0.57 0.94 16 26 C 0.08 0.85 4.16 45.23 0.19 1.04 16 27 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 28 C 0.11 1.27 5.89 86.53 0.51 1.78 16 29 C -0.19 -8.03 9.64 22.39 0.22 -7.82 16 30 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 31 H 0.11 5.23 5.64 -2.91 -0.02 5.21 16 32 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 33 H 0.15 3.20 8.06 -2.91 -0.02 3.17 16 34 H 0.13 1.81 7.66 -2.39 -0.02 1.79 16 35 H 0.15 1.46 7.81 -2.38 -0.02 1.44 16 36 H 0.13 0.34 5.82 -2.39 -0.01 0.33 16 37 H 0.10 0.48 8.14 -2.38 -0.02 0.46 16 38 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.11 1.11 7.87 -2.39 -0.02 1.09 16 40 H 0.14 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.14 0.37 7.56 -2.39 -0.02 0.35 16 42 H 0.10 0.81 7.85 -2.39 -0.02 0.79 16 43 H 0.10 1.54 6.95 -2.39 -0.02 1.52 16 44 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -91.53 368.48 4.19 -87.34 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 1.05 Total: 17.37 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: 6.42 Total: -13.65 kcal Atomic # 7 Polarization: -74.81 SS G_CDS: -4.83 Total: -79.64 kcal Atomic # 8 Polarization: -56.42 SS G_CDS: -0.47 Total: -56.89 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -91.53 4.19 -87.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378310638.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.643 kcal (2) G-P(sol) polarization free energy of solvation -91.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds