Wall clock time and date at job start Sat Apr 11 2020 07:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86796 * 120.00159 * 2 1 4 4 H 1.48499 * 109.47130 * 269.99790 * 3 2 1 5 5 H 1.48494 * 109.47280 * 29.99984 * 3 2 1 6 6 H 1.48508 * 109.47310 * 150.00048 * 3 2 1 7 7 C 1.37879 * 119.99983 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00453 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99954 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47289 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47286 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.47413 * 54.99514 * 11 10 9 13 13 N 1.46899 * 109.46642 * 294.99406 * 11 10 9 14 14 C 1.50698 * 109.47045 * 174.99954 * 11 10 9 15 15 O 1.21283 * 120.00472 * 99.99838 * 14 11 10 16 16 N 1.34777 * 119.99538 * 279.99176 * 14 11 10 17 17 C 1.46499 * 119.99665 * 179.72653 * 16 14 11 18 18 C 1.50703 * 109.47138 * 180.28062 * 17 16 14 19 19 C 1.38269 * 119.94053 * 269.72469 * 18 17 16 20 20 C 1.38144 * 120.05234 * 179.72518 * 19 18 17 21 21 C 1.38733 * 119.94469 * 0.56979 * 20 19 18 22 22 O 1.35897 * 120.05408 * 179.68612 * 21 20 19 23 23 C 1.42902 * 117.00220 * 0.02562 * 22 21 20 24 24 F 1.39896 * 109.47021 * 60.00419 * 23 22 21 25 25 F 1.39906 * 109.46934 * 180.02562 * 23 22 21 26 26 F 1.39899 * 109.47303 * 300.00063 * 23 22 21 27 27 C 1.38732 * 119.88697 * 359.70305 * 21 20 19 28 28 C 1.38148 * 119.94451 * 0.02562 * 27 21 20 29 29 H 0.96998 * 120.00408 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.47379 * 59.99622 * 9 7 2 31 31 H 1.09004 * 109.47137 * 299.99805 * 9 7 2 32 32 H 1.08994 * 109.47393 * 59.99417 * 10 9 7 33 33 H 1.09004 * 109.46697 * 299.99860 * 10 9 7 34 34 H 1.00903 * 111.00374 * 300.00267 * 13 11 10 35 35 H 1.00904 * 110.99967 * 63.95429 * 13 11 10 36 36 H 0.97001 * 120.00485 * 0.02562 * 16 14 11 37 37 H 1.09009 * 109.47454 * 300.27637 * 17 16 14 38 38 H 1.08998 * 109.47492 * 60.27932 * 17 16 14 39 39 H 1.08001 * 119.97509 * 359.97438 * 19 18 17 40 40 H 1.08008 * 120.02755 * 180.25412 * 20 19 18 41 41 H 1.07998 * 120.02335 * 179.97438 * 27 21 20 42 42 H 1.08003 * 119.96636 * 179.97438 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 6 1.4801 -4.9872 0.0012 12 1 0.7889 -5.0072 -0.8413 13 7 0.7271 -5.1183 1.2557 14 6 2.4548 -6.1299 -0.1214 15 8 2.7856 -6.7533 0.8649 16 7 2.9589 -6.4592 -1.3272 17 6 3.9110 -7.5662 -1.4455 18 6 4.3233 -7.7224 -2.8867 19 6 3.6078 -8.5601 -3.7222 20 6 3.9802 -8.7007 -5.0451 21 6 5.0802 -8.0096 -5.5320 22 8 5.4523 -8.1511 -6.8313 23 6 4.6650 -9.0277 -7.6399 24 9 3.3439 -8.5689 -7.6752 25 9 5.1842 -9.0561 -8.9388 26 9 4.6967 -10.3168 -7.0973 27 6 5.7998 -7.1740 -4.6901 28 6 5.4199 -7.0326 -3.3694 29 1 -0.4850 0.8400 -0.0004 30 1 0.6246 -2.5571 -0.8896 31 1 0.6239 -2.5567 0.8903 32 1 2.8712 -3.6040 0.8921 33 1 2.8724 -3.6048 -0.8878 34 1 1.3461 -5.1025 2.0524 35 1 0.0223 -4.4002 1.3311 36 1 2.6946 -5.9604 -2.1161 37 1 4.7906 -7.3557 -0.8369 38 1 3.4420 -8.4875 -1.0999 39 1 2.7546 -9.1019 -3.3414 40 1 3.4185 -9.3520 -5.6984 41 1 6.6567 -6.6353 -5.0667 42 1 5.9801 -6.3826 -2.7136 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424062969.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:44:37 Heat of formation + Delta-G solvation = -241.023438 kcal Electronic energy + Delta-G solvation = -29292.090772 eV Core-core repulsion = 24434.695413 eV Total energy + Delta-G solvation = -4857.395359 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.129 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -51.51547 -49.23072 -49.11061 -41.47059 -40.82837 -39.07318 -37.08438 -35.76849 -34.81790 -32.25012 -32.02708 -31.65878 -28.66676 -27.52992 -26.45747 -25.09620 -24.08551 -22.83106 -22.30000 -21.15639 -20.76337 -20.23174 -20.09798 -18.94732 -18.13891 -17.84819 -17.38989 -16.68996 -16.64829 -16.39542 -16.31722 -15.94078 -15.87075 -15.79171 -15.59039 -15.51966 -15.46047 -15.22226 -15.20578 -14.93269 -14.80068 -14.53894 -14.40725 -14.33435 -13.98720 -13.54921 -13.35513 -13.17043 -12.91217 -12.65760 -12.60248 -12.51641 -12.10324 -11.77928 -11.70531 -11.28646 -10.78602 -10.54898 -10.17136 -10.08970 -9.69329 -9.55338 -8.20394 -6.30486 -0.03049 0.20198 0.38892 1.40394 1.41279 1.51593 1.64446 1.75009 2.10580 2.40793 2.64411 2.69055 2.92833 3.13503 3.55617 3.57784 3.66443 3.78844 3.87371 4.00762 4.16398 4.21872 4.28742 4.31378 4.57658 4.68902 4.71250 4.87846 4.90221 4.93571 5.07185 5.11784 5.31374 5.41523 5.46585 5.48698 5.67964 5.80893 5.82492 6.10052 6.22743 6.50033 6.54498 6.85486 7.24798 7.38650 8.90383 Molecular weight = 346.13amu Principal moments of inertia in cm(-1) A = 0.011810 B = 0.002080 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.402158 B =13457.198116 C =14872.036006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.004 3.996 3 Si 0.958 3.042 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.543 4.543 8 H 0.056 0.944 9 C 0.029 3.971 10 C -0.120 4.120 11 C 0.080 3.920 12 H 0.108 0.892 13 N -0.831 5.831 14 C 0.529 3.471 15 O -0.570 6.570 16 N -0.716 5.716 17 C 0.166 3.834 18 C -0.123 4.123 19 C -0.058 4.058 20 C -0.198 4.198 21 C 0.096 3.904 22 O -0.317 6.317 23 C 0.607 3.393 24 F -0.165 7.165 25 F -0.131 7.131 26 F -0.164 7.164 27 C -0.127 4.127 28 C -0.060 4.060 29 H 0.263 0.737 30 H 0.001 0.999 31 H 0.002 0.998 32 H 0.045 0.955 33 H 0.067 0.933 34 H 0.344 0.656 35 H 0.352 0.648 36 H 0.412 0.588 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.149 0.851 40 H 0.140 0.860 41 H 0.156 0.844 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.075 -20.487 -15.494 27.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.194 4.194 3 Si 0.783 3.217 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.581 4.581 8 H 0.074 0.926 9 C -0.008 4.008 10 C -0.160 4.160 11 C -0.035 4.035 12 H 0.126 0.874 13 N -0.362 5.362 14 C 0.316 3.684 15 O -0.449 6.449 16 N -0.369 5.369 17 C 0.043 3.957 18 C -0.124 4.124 19 C -0.077 4.077 20 C -0.217 4.217 21 C 0.054 3.946 22 O -0.237 6.237 23 C 0.517 3.483 24 F -0.147 7.147 25 F -0.112 7.112 26 F -0.146 7.146 27 C -0.145 4.145 28 C -0.079 4.079 29 H 0.072 0.928 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.157 0.843 35 H 0.167 0.833 36 H 0.248 0.752 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.167 0.833 40 H 0.158 0.842 41 H 0.173 0.827 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 11.065 -21.504 -15.186 28.557 hybrid contribution 0.180 1.945 -0.403 1.994 sum 11.245 -19.559 -15.589 27.423 Atomic orbital electron populations 1.70056 1.07507 1.27727 1.51459 1.25866 0.95717 1.02988 0.94841 0.85549 0.78659 0.78998 0.78467 1.19738 1.20954 1.19144 1.21630 0.93383 0.92424 1.50657 0.92603 1.18977 0.94091 0.92089 0.95675 1.22126 0.98747 0.93623 1.01517 1.21420 0.94818 0.91424 0.95886 0.87404 1.58765 1.18405 1.55629 1.03419 1.20654 0.80827 0.84003 0.82941 1.90632 1.61388 1.54527 1.38318 1.45973 1.46132 1.35302 1.09451 1.20151 0.92938 0.90229 0.92351 1.19866 0.97493 0.99734 0.95271 1.21084 0.98735 0.96212 0.91637 1.21635 0.98081 1.03424 0.98536 1.18998 0.96364 0.98942 0.80325 1.86411 1.53259 1.61983 1.22041 1.19275 0.75274 0.76196 0.77562 1.93315 1.36511 1.88655 1.96204 1.93319 1.87172 1.96015 1.34725 1.93308 1.95899 1.39573 1.85785 1.20664 1.01746 0.99592 0.92500 1.21209 0.95395 0.97016 0.94253 0.92778 0.98044 0.97991 0.93615 0.91390 0.84309 0.83321 0.75176 0.90551 0.90470 0.83329 0.84223 0.82664 0.82743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.99 13.28 21.45 0.28 -53.70 16 2 C 0.00 0.24 5.46 84.66 0.46 0.70 16 3 Si 0.96 42.87 29.54 68.60 2.03 44.90 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.54 -29.30 9.11 25.60 0.23 -29.06 16 8 H 0.06 2.93 7.74 -2.91 -0.02 2.91 16 9 C 0.03 1.38 4.74 29.85 0.14 1.53 16 10 C -0.12 -4.49 4.78 30.60 0.15 -4.34 16 11 C 0.08 2.55 3.21 44.17 0.14 2.69 16 12 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 13 N -0.83 -27.80 8.94 -171.81 -1.54 -29.33 16 14 C 0.53 15.89 7.08 87.66 0.62 16.51 16 15 O -0.57 -20.79 16.25 -3.04 -0.05 -20.84 16 16 N -0.72 -15.64 5.55 -466.78 -2.59 -18.23 16 17 C 0.17 3.02 5.80 85.63 0.50 3.51 16 18 C -0.12 -1.83 5.25 -19.85 -0.10 -1.93 16 19 C -0.06 -0.82 9.69 22.25 0.22 -0.61 16 20 C -0.20 -2.99 8.26 22.37 0.18 -2.80 16 21 C 0.10 1.55 6.48 22.51 0.15 1.69 16 22 O -0.32 -5.19 10.37 -92.40 -0.96 -6.15 16 23 C 0.61 8.84 3.42 113.37 0.39 9.23 16 24 F -0.16 -2.49 15.56 44.97 0.70 -1.79 16 25 F -0.13 -1.87 17.53 44.97 0.79 -1.08 16 26 F -0.16 -2.31 15.56 44.97 0.70 -1.61 16 27 C -0.13 -1.78 9.99 22.37 0.22 -1.55 16 28 C -0.06 -0.82 9.69 22.25 0.22 -0.61 16 29 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 30 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 31 H 0.00 0.09 6.87 -2.38 -0.02 0.08 16 32 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 34 H 0.34 11.74 8.58 -89.69 -0.77 10.97 16 35 H 0.35 12.02 7.55 -89.69 -0.68 11.34 16 36 H 0.41 7.66 8.46 -92.71 -0.78 6.88 16 37 H 0.08 1.44 8.08 -2.38 -0.02 1.43 16 38 H 0.08 1.44 8.08 -2.39 -0.02 1.42 16 39 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 40 H 0.14 1.90 5.10 -2.91 -0.01 1.88 16 41 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 42 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -65.46 372.39 1.76 -63.71 By element: Atomic # 1 Polarization: 30.32 SS G_CDS: -1.12 Total: 29.20 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: 3.51 Total: -5.05 kcal Atomic # 7 Polarization: -97.43 SS G_CDS: -3.84 Total: -101.27 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -1.01 Total: -26.99 kcal Atomic # 9 Polarization: -6.68 SS G_CDS: 2.19 Total: -4.49 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -65.46 1.76 -63.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424062969.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.316 kcal (2) G-P(sol) polarization free energy of solvation -65.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds