Wall clock time and date at job start Sat Apr 11 2020 07:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99938 * 2 1 4 4 H 1.48503 * 109.47073 * 270.00048 * 3 2 1 5 5 H 1.48501 * 109.47271 * 29.99793 * 3 2 1 6 6 H 1.48494 * 109.47152 * 149.99955 * 3 2 1 7 7 C 1.37875 * 119.99681 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99645 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00234 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46956 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46906 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.47482 * 305.00177 * 11 10 9 13 13 N 1.46903 * 109.47021 * 65.00095 * 11 10 9 14 14 C 1.50703 * 109.47211 * 185.00139 * 11 10 9 15 15 O 1.21280 * 119.99773 * 260.00460 * 14 11 10 16 16 N 1.34772 * 119.99842 * 79.99643 * 14 11 10 17 17 C 1.46505 * 119.99791 * 179.97438 * 16 14 11 18 18 C 1.50698 * 109.47077 * 180.02562 * 17 16 14 19 19 N 1.28757 * 124.73704 * 90.27162 * 18 17 16 20 20 C 1.32568 * 117.12645 * 180.17587 * 19 18 17 21 21 C 1.48229 * 122.97538 * 179.82049 * 20 19 18 22 22 C 1.39852 * 120.91020 * 359.70358 * 21 20 19 23 23 C 1.37909 * 119.01382 * 179.72131 * 22 21 20 24 24 N 1.31965 * 120.88770 * 0.30842 * 23 22 21 25 25 C 1.31973 * 122.01532 * 359.97033 * 24 23 22 26 26 C 1.37905 * 120.88706 * 0.02595 * 25 24 23 27 27 C 1.34916 * 114.04528 * 359.55068 * 20 19 18 28 28 S 1.70915 * 124.74496 * 269.97946 * 18 17 16 29 29 H 0.97005 * 119.99981 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46725 * 60.00277 * 9 7 2 31 31 H 1.08993 * 109.47317 * 300.00242 * 9 7 2 32 32 H 1.08999 * 109.46707 * 60.00566 * 10 9 7 33 33 H 1.08997 * 109.47015 * 299.99807 * 10 9 7 34 34 H 1.00894 * 111.00011 * 296.03903 * 13 11 10 35 35 H 1.00897 * 111.00294 * 60.00282 * 13 11 10 36 36 H 0.96998 * 120.00439 * 0.02562 * 16 14 11 37 37 H 1.09003 * 109.46654 * 60.00516 * 17 16 14 38 38 H 1.08994 * 109.47334 * 300.01028 * 17 16 14 39 39 H 1.08002 * 120.49547 * 0.02562 * 22 21 20 40 40 H 1.07995 * 119.55486 * 180.27545 * 23 22 21 41 41 H 1.08003 * 119.55308 * 180.02562 * 25 24 23 42 42 H 1.08003 * 120.49314 * 179.97438 * 26 25 24 43 43 H 1.07998 * 126.07065 * 180.19408 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4803 -4.9871 0.0033 12 1 0.7878 -5.0065 0.8448 13 7 0.7290 -5.1192 -1.2522 14 6 2.4548 -6.1298 0.1282 15 8 2.7870 -6.7538 -0.8573 16 7 2.9573 -6.4580 1.3349 17 6 3.9042 -7.5693 1.4564 18 6 4.3099 -7.7281 2.8990 19 7 3.7052 -8.4787 3.7528 20 6 4.1899 -8.5027 4.9864 21 6 3.5935 -9.3173 6.0718 22 6 2.4647 -10.1092 5.8384 23 6 1.9455 -10.8560 6.8750 24 7 2.4958 -10.8250 8.0741 25 6 3.5578 -10.0873 8.3377 26 6 4.1406 -9.3102 7.3589 27 6 5.2775 -7.7246 5.1651 28 16 5.6410 -6.9427 3.6287 29 1 -0.4850 0.8401 -0.0004 30 1 0.6240 -2.5574 -0.8880 31 1 0.6247 -2.5563 0.8919 32 1 2.8718 -3.6035 0.8927 33 1 2.8719 -3.6051 -0.8873 34 1 0.0242 -4.4013 -1.3290 35 1 1.3490 -5.1040 -2.0480 36 1 2.6914 -5.9591 2.1230 37 1 4.7868 -7.3623 0.8511 38 1 3.4326 -8.4883 1.1085 39 1 2.0092 -10.1393 4.8596 40 1 1.0767 -11.4740 6.7033 41 1 3.9760 -10.0922 9.3335 42 1 5.0094 -8.7085 7.5818 43 1 5.8273 -7.6020 6.0865 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424142779.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:44:49 Heat of formation + Delta-G solvation = 34.247667 kcal Electronic energy + Delta-G solvation = -25850.198965 eV Core-core repulsion = 22021.642619 eV Total energy + Delta-G solvation = -3828.556346 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 346.120 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.94781 -39.92002 -39.43640 -35.76910 -35.09168 -33.43822 -32.88212 -31.72074 -30.56733 -29.92316 -28.29323 -26.36587 -25.32672 -23.84601 -23.61083 -22.46061 -20.82396 -20.36722 -19.93793 -18.77581 -17.44790 -17.17699 -16.49049 -16.27915 -16.15817 -15.93932 -15.34652 -15.13069 -14.97730 -14.54701 -14.49200 -14.15522 -14.14297 -13.92956 -13.87820 -13.38163 -13.15999 -13.03520 -12.61592 -12.22597 -12.17554 -11.88326 -11.72462 -11.13853 -10.96810 -10.83421 -10.71509 -10.18245 -10.03654 -10.03029 -9.91728 -9.91417 -9.57661 -9.37226 -9.26596 -9.19140 -8.91978 -8.47150 -8.23219 -6.11567 -4.14878 -0.09607 0.72351 0.76697 0.81120 1.20317 2.36897 2.81999 3.14822 3.24659 3.31570 3.34005 3.41336 3.52784 4.06998 4.13290 4.31499 4.36436 4.56575 4.66758 4.67560 4.82514 4.94139 5.08218 5.14923 5.18700 5.24642 5.28205 5.39732 5.42224 5.53885 5.68399 5.70437 5.84559 6.22631 6.25819 6.25865 6.46430 6.82653 7.16491 7.33387 7.47597 7.55006 7.57112 7.60838 7.85071 7.87212 8.27105 8.32141 8.91032 9.50142 10.99298 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.011817 B = 0.002078 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.976623 B =13468.842145 C =14053.394261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.138 4.138 11 C 0.077 3.923 12 H 0.098 0.902 13 N -0.830 5.830 14 C 0.531 3.469 15 O -0.534 6.534 16 N -0.731 5.731 17 C 0.200 3.800 18 C 0.030 3.970 19 N -0.444 5.444 20 C 0.096 3.904 21 C 0.027 3.973 22 C -0.140 4.140 23 C 0.100 3.900 24 N -0.485 5.485 25 C 0.100 3.900 26 C -0.160 4.160 27 C -0.241 4.241 28 S 0.181 5.819 29 H 0.262 0.738 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.355 0.645 35 H 0.346 0.654 36 H 0.404 0.596 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.146 0.854 40 H 0.160 0.840 41 H 0.159 0.841 42 H 0.137 0.863 43 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.731 -19.338 14.007 26.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.178 4.178 11 C -0.039 4.039 12 H 0.115 0.885 13 N -0.363 5.363 14 C 0.318 3.682 15 O -0.409 6.409 16 N -0.386 5.386 17 C 0.073 3.927 18 C -0.249 4.249 19 N -0.158 5.158 20 C -0.036 4.036 21 C 0.016 3.984 22 C -0.161 4.161 23 C -0.057 4.057 24 N -0.194 5.194 25 C -0.057 4.057 26 C -0.181 4.181 27 C -0.381 4.381 28 S 0.437 5.563 29 H 0.071 0.929 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.171 0.829 35 H 0.159 0.841 36 H 0.239 0.761 37 H 0.109 0.891 38 H 0.117 0.883 39 H 0.163 0.837 40 H 0.177 0.823 41 H 0.176 0.824 42 H 0.154 0.846 43 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 10.540 -20.479 13.632 26.764 hybrid contribution 0.793 2.245 0.309 2.401 sum 11.333 -18.234 13.941 25.599 Atomic orbital electron populations 1.69949 1.06017 1.26816 1.50352 1.25018 0.94878 0.99328 0.95127 0.86581 0.79808 0.83359 0.78190 1.20596 1.21148 1.19902 1.21167 0.93001 0.90866 1.51199 0.92712 1.19104 0.93712 0.91084 0.97408 1.22396 0.99915 0.93917 1.01526 1.21463 0.94605 0.92018 0.95789 0.88456 1.58729 1.18448 1.55982 1.03100 1.20940 0.80894 0.84467 0.81940 1.90651 1.59951 1.53291 1.36978 1.45976 1.47202 1.34700 1.10765 1.19686 0.94457 0.92649 0.85890 1.26904 0.97888 0.99161 1.00918 1.66103 1.29830 1.19140 1.00748 1.18620 0.94579 0.99532 0.90819 1.18372 0.94483 0.94466 0.91060 1.22323 0.95776 0.96330 1.01662 1.22778 0.98664 0.96454 0.87780 1.67683 1.09938 1.19360 1.22442 1.22670 0.91738 0.91921 0.99345 1.22125 1.01794 1.01416 0.92741 1.27272 1.03134 1.04211 1.03530 1.84302 1.28593 1.42682 1.00679 0.92852 0.96335 0.96331 0.92541 0.92551 0.82906 0.84088 0.76133 0.89079 0.88316 0.83659 0.82289 0.82365 0.84562 0.79923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.74 13.29 55.43 0.74 -25.01 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.52 -14.11 9.11 -34.44 -0.31 -14.42 16 8 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 9 C 0.02 0.57 4.74 -27.88 -0.13 0.44 16 10 C -0.14 -2.60 4.78 -26.73 -0.13 -2.72 16 11 C 0.08 1.25 3.21 -68.86 -0.22 1.03 16 12 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 13 N -0.83 -13.91 8.94 -5.65 -0.05 -13.96 16 14 C 0.53 8.30 7.08 -10.99 -0.08 8.22 16 15 O -0.53 -9.82 16.25 5.56 0.09 -9.73 16 16 N -0.73 -8.99 5.55 -61.47 -0.34 -9.33 16 17 C 0.20 2.14 6.25 -5.19 -0.03 2.10 16 18 C 0.03 0.30 6.73 -13.57 -0.09 0.21 16 19 N -0.44 -4.80 10.02 -8.44 -0.08 -4.89 16 20 C 0.10 0.92 6.66 -84.62 -0.56 0.36 16 21 C 0.03 0.25 5.91 -104.58 -0.62 -0.37 16 22 C -0.14 -1.27 9.72 -39.10 -0.38 -1.65 16 23 C 0.10 0.85 11.17 -17.61 -0.20 0.65 16 24 N -0.48 -4.59 10.35 -13.36 -0.14 -4.73 16 25 C 0.10 0.75 11.17 -17.61 -0.20 0.55 16 26 C -0.16 -1.14 9.56 -39.10 -0.37 -1.51 16 27 C -0.24 -1.80 10.66 29.55 0.32 -1.49 16 28 S 0.18 1.42 23.16 -107.50 -2.49 -1.07 16 29 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.02 0.46 6.87 -51.93 -0.36 0.10 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.36 5.99 7.55 -39.30 -0.30 5.69 16 35 H 0.35 5.83 8.58 -39.29 -0.34 5.49 16 36 H 0.40 4.48 8.46 -40.82 -0.35 4.14 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.15 1.30 7.80 -52.49 -0.41 0.89 16 40 H 0.16 0.97 8.06 -52.49 -0.42 0.54 16 41 H 0.16 0.73 8.06 -52.48 -0.42 0.30 16 42 H 0.14 0.59 6.80 -52.48 -0.36 0.23 16 43 H 0.18 0.82 6.98 -52.49 -0.37 0.46 16 LS Contribution 384.68 15.07 5.80 5.80 Total: -1.00 -33.04 384.68 -10.00 -43.04 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -5.39 Total: 10.99 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -3.11 Total: -7.09 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: 0.12 Total: -57.92 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -2.49 Total: -1.07 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.04 -10.00 -43.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424142779.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.293 kcal (2) G-P(sol) polarization free energy of solvation -33.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds