Wall clock time and date at job start Sat Apr 11 2020 07:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00240 * 2 1 4 4 H 1.48498 * 109.47114 * 269.99933 * 3 2 1 5 5 H 1.48505 * 109.47140 * 29.99558 * 3 2 1 6 6 H 1.48501 * 109.47113 * 149.99435 * 3 2 1 7 7 C 1.37879 * 119.99774 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99741 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00025 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47157 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47213 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.47102 * 55.00092 * 11 10 9 13 13 N 1.46899 * 109.46831 * 294.99964 * 11 10 9 14 14 C 1.50703 * 109.46907 * 174.99955 * 11 10 9 15 15 O 1.21280 * 119.99773 * 100.00472 * 14 11 10 16 16 N 1.34772 * 119.99842 * 279.99654 * 14 11 10 17 17 C 1.46505 * 119.99791 * 179.97438 * 16 14 11 18 18 C 1.50698 * 109.47077 * 180.02562 * 17 16 14 19 19 N 1.28757 * 124.73704 * 90.27162 * 18 17 16 20 20 C 1.32568 * 117.12645 * 180.17587 * 19 18 17 21 21 C 1.48229 * 122.97538 * 179.82049 * 20 19 18 22 22 C 1.39852 * 120.91020 * 359.70358 * 21 20 19 23 23 C 1.37909 * 119.01382 * 179.72131 * 22 21 20 24 24 N 1.31965 * 120.88770 * 0.30842 * 23 22 21 25 25 C 1.31973 * 122.01532 * 359.97033 * 24 23 22 26 26 C 1.37905 * 120.88706 * 0.02595 * 25 24 23 27 27 C 1.34916 * 114.04528 * 359.55068 * 20 19 18 28 28 S 1.70915 * 124.74496 * 269.97946 * 18 17 16 29 29 H 0.96998 * 120.00280 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47615 * 59.99764 * 9 7 2 31 31 H 1.09000 * 109.47268 * 299.99700 * 9 7 2 32 32 H 1.09003 * 109.46835 * 59.99621 * 10 9 7 33 33 H 1.09001 * 109.47245 * 300.00007 * 10 9 7 34 34 H 1.00904 * 110.99878 * 176.04714 * 13 11 10 35 35 H 1.00904 * 111.00381 * 299.99715 * 13 11 10 36 36 H 0.96998 * 120.00439 * 0.02562 * 16 14 11 37 37 H 1.09003 * 109.46654 * 60.00516 * 17 16 14 38 38 H 1.08994 * 109.47334 * 300.01028 * 17 16 14 39 39 H 1.08002 * 120.49547 * 0.02562 * 22 21 20 40 40 H 1.07995 * 119.55486 * 180.27545 * 23 22 21 41 41 H 1.08003 * 119.55308 * 180.02562 * 25 24 23 42 42 H 1.08003 * 120.49314 * 179.97438 * 26 25 24 43 43 H 1.07998 * 126.07065 * 180.19408 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0018 11 6 1.4801 -4.9872 0.0025 12 1 0.7883 -5.0077 -0.8396 13 7 0.7278 -5.1176 1.2575 14 6 2.4548 -6.1300 -0.1201 15 8 2.7861 -6.7529 0.8664 16 7 2.9581 -6.4600 -1.3260 17 6 3.9061 -7.5706 -1.4451 18 6 4.3135 -7.7308 -2.8870 19 7 5.3192 -7.1425 -3.4350 20 6 5.5384 -7.3900 -4.7188 21 6 6.6555 -6.7803 -5.4787 22 6 7.5435 -5.8927 -4.8625 23 6 8.5726 -5.3528 -5.6051 24 7 8.7209 -5.6588 -6.8802 25 6 7.9022 -6.4872 -7.5007 26 6 6.8467 -7.0720 -6.8331 27 6 4.6581 -8.2505 -5.2709 28 16 3.5095 -8.7243 -4.0218 29 1 -0.4850 0.8400 -0.0004 30 1 0.6246 -2.5571 -0.8896 31 1 0.6239 -2.5567 0.8903 32 1 2.8711 -3.6040 0.8923 33 1 2.8725 -3.6049 -0.8877 34 1 0.1634 -5.9540 1.2555 35 1 1.3473 -5.1013 2.0538 36 1 2.6933 -5.9617 -2.1150 37 1 3.4348 -8.4894 -1.0960 38 1 4.7880 -7.3620 -0.8396 39 1 7.4281 -5.6378 -3.8194 40 1 9.2660 -4.6699 -5.1369 41 1 8.0609 -6.7101 -8.5455 42 1 6.1803 -7.7488 -7.3473 43 1 4.6571 -8.5883 -6.2966 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424142780.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:44:53 Heat of formation + Delta-G solvation = 35.507332 kcal Electronic energy + Delta-G solvation = -25991.992629 eV Core-core repulsion = 22163.490907 eV Total energy + Delta-G solvation = -3828.501723 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 346.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.95346 -40.00191 -39.51296 -35.63341 -35.06272 -33.45259 -32.81108 -31.69155 -30.59732 -30.10573 -28.28029 -26.29210 -25.32478 -23.73043 -23.51934 -22.43861 -20.77196 -20.41476 -19.89896 -18.81062 -17.30297 -17.17111 -16.61550 -16.21197 -16.08583 -15.93600 -15.63618 -15.25300 -15.05997 -14.78090 -14.44794 -14.17035 -14.08951 -13.92164 -13.87863 -13.52729 -13.24412 -12.79999 -12.33091 -12.23996 -12.03490 -11.89296 -11.56704 -10.89609 -10.87076 -10.68966 -10.57007 -10.24592 -10.18272 -9.98146 -9.88574 -9.81973 -9.54471 -9.40306 -9.27552 -9.01182 -8.97169 -8.38470 -8.23189 -5.94366 -3.96428 -0.12213 0.73256 0.76372 0.79553 1.14748 2.36131 2.65280 3.13215 3.34795 3.39429 3.41295 3.44955 3.55162 4.09707 4.11526 4.31976 4.49924 4.55974 4.65487 4.68276 4.80209 4.84355 4.97202 5.08342 5.20176 5.26869 5.34947 5.41287 5.45462 5.48439 5.69173 5.78671 5.86303 6.16601 6.29014 6.41646 6.62740 7.06195 7.14674 7.26871 7.47600 7.60417 7.74363 7.76223 7.94887 8.11764 8.16311 8.47749 9.11470 9.66860 11.16563 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.008207 B = 0.002609 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3410.726666 B =10731.122411 C =13376.927507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.052 0.948 9 C 0.032 3.968 10 C -0.096 4.096 11 C 0.081 3.919 12 H 0.099 0.901 13 N -0.806 5.806 14 C 0.488 3.512 15 O -0.550 6.550 16 N -0.727 5.727 17 C 0.197 3.803 18 C 0.032 3.968 19 N -0.441 5.441 20 C 0.100 3.900 21 C 0.025 3.975 22 C -0.139 4.139 23 C 0.101 3.899 24 N -0.484 5.484 25 C 0.099 3.901 26 C -0.160 4.160 27 C -0.240 4.240 28 S 0.170 5.830 29 H 0.259 0.741 30 H 0.013 0.987 31 H 0.035 0.965 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.334 0.666 35 H 0.349 0.651 36 H 0.406 0.594 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.146 0.854 40 H 0.161 0.839 41 H 0.159 0.841 42 H 0.136 0.864 43 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.168 -21.947 -14.170 28.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.070 0.930 9 C -0.006 4.006 10 C -0.134 4.134 11 C -0.035 4.035 12 H 0.117 0.883 13 N -0.333 5.333 14 C 0.274 3.726 15 O -0.427 6.427 16 N -0.382 5.382 17 C 0.069 3.931 18 C -0.248 4.248 19 N -0.156 5.156 20 C -0.032 4.032 21 C 0.014 3.986 22 C -0.159 4.159 23 C -0.056 4.056 24 N -0.193 5.193 25 C -0.057 4.057 26 C -0.181 4.181 27 C -0.380 4.380 28 S 0.426 5.574 29 H 0.069 0.931 30 H 0.031 0.969 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.146 0.854 35 H 0.163 0.837 36 H 0.240 0.760 37 H 0.108 0.892 38 H 0.117 0.883 39 H 0.164 0.836 40 H 0.178 0.822 41 H 0.176 0.824 42 H 0.154 0.846 43 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 9.999 -21.543 -13.687 27.412 hybrid contribution 0.925 0.209 -0.426 1.040 sum 10.924 -21.334 -14.113 27.815 Atomic orbital electron populations 1.69970 1.05952 1.26429 1.50863 1.24987 0.94806 0.99063 0.95461 0.86653 0.79920 0.83753 0.78008 1.20779 1.21250 1.19936 1.21277 0.92917 0.91306 1.50575 0.92974 1.19015 0.93533 0.89812 0.98199 1.21676 0.98880 0.92065 1.00800 1.21858 0.93402 0.93061 0.95216 0.88307 1.58999 1.26844 1.44279 1.03220 1.22876 0.82082 0.85666 0.81997 1.90662 1.61037 1.54134 1.36826 1.46175 1.46310 1.34591 1.11076 1.19725 0.94849 0.91905 0.86578 1.26898 0.96027 0.99996 1.01833 1.66105 1.17181 1.22791 1.09478 1.18640 0.97168 0.98413 0.88961 1.18363 0.92450 0.95318 0.92477 1.22344 0.94790 0.96408 1.02388 1.22798 0.95974 0.97197 0.89592 1.67688 1.27698 1.13222 1.10696 1.22669 0.90402 0.92444 1.00211 1.22108 1.00163 1.02091 0.93715 1.27241 1.00231 1.05283 1.05258 1.84150 1.29460 1.43074 1.00667 0.93097 0.96908 0.94621 0.92725 0.92795 0.85397 0.83716 0.75961 0.89181 0.88348 0.83593 0.82201 0.82369 0.84608 0.79889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.89 13.29 55.43 0.74 -26.16 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.03 0.80 4.86 -27.88 -0.14 0.66 16 10 C -0.10 -1.90 4.78 -26.73 -0.13 -2.03 16 11 C 0.08 1.29 3.15 -68.86 -0.22 1.08 16 12 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 13 N -0.81 -13.02 8.44 -5.65 -0.05 -13.07 16 14 C 0.49 7.18 7.07 -10.99 -0.08 7.11 16 15 O -0.55 -9.44 16.25 5.56 0.09 -9.35 16 16 N -0.73 -8.56 5.55 -61.47 -0.34 -8.90 16 17 C 0.20 2.03 6.25 -5.19 -0.03 2.00 16 18 C 0.03 0.30 6.73 -13.57 -0.09 0.21 16 19 N -0.44 -4.90 10.02 -8.44 -0.08 -4.98 16 20 C 0.10 0.97 6.66 -84.62 -0.56 0.41 16 21 C 0.02 0.24 5.91 -104.58 -0.62 -0.38 16 22 C -0.14 -1.37 9.72 -39.10 -0.38 -1.75 16 23 C 0.10 0.94 11.17 -17.61 -0.20 0.75 16 24 N -0.48 -4.89 10.35 -13.36 -0.14 -5.03 16 25 C 0.10 0.79 11.17 -17.61 -0.20 0.59 16 26 C -0.16 -1.18 9.56 -39.10 -0.37 -1.56 16 27 C -0.24 -1.73 10.66 29.55 0.32 -1.41 16 28 S 0.17 1.20 23.16 -107.50 -2.49 -1.29 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.04 0.98 7.75 -51.93 -0.40 0.57 16 32 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.33 4.60 9.06 -39.29 -0.36 4.24 16 35 H 0.35 5.74 8.58 -39.29 -0.34 5.40 16 36 H 0.41 4.35 8.46 -40.82 -0.35 4.01 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.15 1.46 7.80 -52.49 -0.41 1.05 16 40 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 41 H 0.16 0.78 8.06 -52.48 -0.42 0.36 16 42 H 0.14 0.60 6.80 -52.48 -0.36 0.24 16 43 H 0.18 0.77 6.98 -52.49 -0.37 0.40 16 LS Contribution 386.63 15.07 5.83 5.83 Total: -1.00 -34.67 386.63 -10.07 -44.74 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -5.50 Total: 9.25 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -3.11 Total: -7.84 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: 0.12 Total: -58.14 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.09 Total: -9.35 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -2.49 Total: -1.29 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.67 -10.07 -44.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424142780.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.248 kcal (2) G-P(sol) polarization free energy of solvation -34.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds