Wall clock time and date at job start Sat Apr 11 2020 07:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86804 * 120.00389 * 2 1 4 4 H 1.48497 * 109.47201 * 270.00324 * 3 2 1 5 5 H 1.48503 * 109.46914 * 29.99767 * 3 2 1 6 6 H 1.48498 * 109.47399 * 149.99927 * 3 2 1 7 7 C 1.38948 * 120.00114 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00046 * 179.97438 * 7 2 1 9 9 N 1.37090 * 120.00022 * 0.02562 * 7 2 1 10 10 C 1.34780 * 120.00350 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99954 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00197 * 179.97438 * 10 9 7 13 13 N 1.46493 * 109.47169 * 180.02562 * 12 10 9 14 14 C 1.39823 * 120.00451 * 180.02562 * 13 12 10 15 15 C 1.38936 * 120.01468 * 359.97438 * 14 13 12 16 16 C 1.38147 * 120.07518 * 180.02562 * 15 14 13 17 17 C 1.38364 * 120.11514 * 0.02562 * 16 15 14 18 18 F 1.35097 * 119.98054 * 179.97438 * 17 16 15 19 19 C 1.39010 * 120.03460 * 359.95852 * 17 16 15 20 20 N 1.40320 * 120.03863 * 180.02562 * 19 17 16 21 21 N 1.40608 * 127.38070 * 312.58006 * 20 19 17 22 22 N 1.28951 * 106.64905 * 179.97438 * 21 20 19 23 23 N 1.28421 * 110.19884 * 359.97438 * 22 21 20 24 24 C 1.30744 * 110.64847 * 359.74740 * 23 22 21 25 25 C 1.50697 * 126.36459 * 180.29848 * 24 23 22 26 26 C 1.53000 * 117.50096 * 12.99311 * 25 24 23 27 27 C 1.52997 * 117.49968 * 304.33344 * 25 24 23 28 28 C 1.38707 * 119.92598 * 359.76291 * 19 17 16 29 29 H 0.97006 * 119.99848 * 0.02562 * 1 2 3 30 30 H 0.97005 * 120.00218 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.47059 * 299.99891 * 12 10 9 32 32 H 1.08996 * 109.47115 * 59.99697 * 12 10 9 33 33 H 0.97003 * 120.00358 * 0.02562 * 13 12 10 34 34 H 1.08005 * 119.96005 * 0.02904 * 15 14 13 35 35 H 1.08006 * 119.94493 * 179.97438 * 16 15 14 36 36 H 1.08998 * 115.55032 * 158.66316 * 25 24 23 37 37 H 1.09004 * 117.49570 * 0.02562 * 26 25 24 38 38 H 1.08999 * 117.49557 * 145.01634 * 26 25 24 39 39 H 1.08998 * 117.50097 * 214.97890 * 27 25 24 40 40 H 1.09004 * 117.49907 * 359.97438 * 27 25 24 41 41 H 1.08007 * 120.05773 * 180.25358 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0016 10 6 1.9972 -3.5578 -0.0016 11 8 3.2102 -3.5579 -0.0011 12 6 1.2437 -4.8629 -0.0022 13 7 2.1957 -5.9764 -0.0014 14 6 1.7297 -7.2947 -0.0023 15 6 0.3638 -7.5490 -0.0034 16 6 -0.0980 -8.8510 -0.0038 17 6 0.7980 -9.9054 -0.0025 18 9 0.3434 -11.1776 -0.0024 19 6 2.1656 -9.6563 -0.0018 20 7 3.0743 -10.7255 -0.0011 21 7 3.0506 -11.8654 0.8218 22 7 4.0669 -12.5847 0.4860 23 7 4.7212 -12.0135 -0.4599 24 6 4.1551 -10.8836 -0.7952 25 6 4.6235 -9.9329 -1.8665 26 6 5.6853 -10.4388 -2.8451 27 6 6.0596 -9.4138 -1.7717 28 6 2.6310 -8.3496 -0.0073 29 1 -0.4850 0.8401 -0.0004 30 1 0.3533 -2.3906 -0.0016 31 1 0.6167 -4.9209 0.8876 32 1 0.6174 -4.9204 -0.8924 33 1 3.1494 -5.7992 -0.0003 34 1 -0.3377 -6.7278 -0.0040 35 1 -1.1602 -9.0463 -0.0042 36 1 3.8664 -9.2510 -2.2537 37 1 6.0447 -11.4595 -2.7142 38 1 5.6268 -10.0895 -3.8759 39 1 6.2474 -8.3905 -2.0968 40 1 6.6655 -9.7595 -0.9342 41 1 3.6931 -8.1537 -0.0109 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425962569.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:45:02 Heat of formation + Delta-G solvation = 97.965211 kcal Electronic energy + Delta-G solvation = -28822.711901 eV Core-core repulsion = 24462.998130 eV Total energy + Delta-G solvation = -4359.713771 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 346.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.00216 -43.39447 -39.93784 -38.53188 -37.75784 -36.09774 -34.59489 -34.01507 -32.13341 -31.58303 -30.90217 -29.57976 -26.91489 -25.70849 -24.76090 -24.15092 -23.39266 -22.76637 -21.72099 -20.88382 -19.71599 -18.82568 -18.29415 -17.63519 -17.22419 -17.01921 -16.47213 -16.14687 -15.75266 -15.37562 -15.31828 -15.04861 -14.90608 -14.53805 -14.31104 -13.94010 -13.75915 -13.43767 -13.31774 -13.11690 -12.98285 -12.59302 -12.42647 -12.23493 -11.96527 -11.83403 -11.75041 -11.71162 -11.36284 -11.23281 -11.09465 -10.97944 -10.57251 -10.44414 -10.13778 -10.07183 -9.77711 -9.34176 -8.82489 -8.26100 -7.61302 -6.66251 -4.08538 0.19804 0.92254 1.08859 1.46080 1.97796 3.00895 3.10663 3.14073 3.17040 3.22354 3.35928 3.50647 3.55779 3.86214 3.98582 4.03856 4.34046 4.36944 4.47831 4.60853 4.63704 4.69950 4.84579 4.94771 5.01241 5.11603 5.18231 5.23451 5.26906 5.40282 5.47318 5.60273 5.62031 5.64476 5.74165 5.77882 5.81393 5.90065 5.95349 6.44474 7.00824 7.32412 7.61277 7.78346 8.20507 8.28358 8.90103 9.22073 9.69386 10.50334 Molecular weight = 346.13amu Principal moments of inertia in cm(-1) A = 0.016221 B = 0.002237 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.710241 B =12515.010111 C =13840.261206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.028 3.972 3 Si 0.933 3.067 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.307 4.307 8 H 0.106 0.894 9 N -0.547 5.547 10 C 0.425 3.575 11 O -0.595 6.595 12 C 0.108 3.892 13 N -0.712 5.712 14 C 0.241 3.759 15 C -0.158 4.158 16 C -0.084 4.084 17 C 0.051 3.949 18 F -0.132 7.132 19 C 0.137 3.863 20 N -0.326 5.326 21 N -0.068 5.068 22 N -0.038 5.038 23 N -0.333 5.333 24 C 0.291 3.709 25 C -0.111 4.111 26 C -0.142 4.142 27 C -0.147 4.147 28 C -0.168 4.168 29 H 0.275 0.725 30 H 0.395 0.605 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.416 0.584 34 H 0.145 0.855 35 H 0.148 0.852 36 H 0.139 0.861 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.105 0.895 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.272 -15.615 -4.413 16.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.176 4.176 3 Si 0.759 3.241 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.436 4.436 8 H 0.124 0.876 9 N -0.181 5.181 10 C 0.211 3.789 11 O -0.482 6.482 12 C -0.020 4.020 13 N -0.341 5.341 14 C 0.131 3.869 15 C -0.181 4.181 16 C -0.104 4.104 17 C 0.028 3.972 18 F -0.111 7.111 19 C 0.044 3.956 20 N -0.116 5.116 21 N -0.052 5.052 22 N -0.033 5.033 23 N -0.183 5.183 24 C 0.016 3.984 25 C -0.133 4.133 26 C -0.180 4.180 27 C -0.185 4.185 28 C -0.193 4.193 29 H 0.085 0.915 30 H 0.229 0.771 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.255 0.745 34 H 0.163 0.837 35 H 0.166 0.834 36 H 0.156 0.844 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.133 0.867 40 H 0.123 0.877 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.914 -16.540 -3.607 17.037 hybrid contribution -0.441 1.509 -0.198 1.585 sum 1.473 -15.031 -3.805 15.575 Atomic orbital electron populations 1.69595 1.06038 1.28722 1.48977 1.25327 0.95681 1.00010 0.96534 0.85811 0.79291 0.80370 0.78601 1.20164 1.20700 1.19257 1.19725 0.93490 0.81917 1.48481 0.87643 1.41794 1.09429 1.04512 1.62379 1.19615 0.88328 0.84821 0.86174 1.90520 1.13693 1.86635 1.57303 1.21076 0.92080 0.86435 1.02443 1.44618 1.10345 1.00572 1.78534 1.17504 0.92127 0.84735 0.92497 1.20805 0.93848 0.96966 1.06528 1.20851 0.99925 0.90634 0.98958 1.17158 0.89655 0.80115 1.10312 1.91522 1.89146 1.36032 1.94354 1.17034 0.86101 0.84704 1.07807 1.48609 1.20332 1.16962 1.25699 1.82808 1.17443 0.91866 1.13070 1.78027 0.99420 1.19740 1.06114 1.74388 1.25502 1.06042 1.12382 1.24779 0.85508 0.94625 0.93475 1.20509 0.95079 1.00343 0.97350 1.23131 0.98437 1.00914 0.95518 1.23187 0.92771 1.00509 1.02057 1.20221 1.00560 0.88393 1.10169 0.91458 0.77092 0.90086 0.90038 0.74473 0.83699 0.83386 0.84376 0.86953 0.87102 0.86711 0.87706 0.84022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.28 13.05 55.50 0.72 -21.55 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 19.41 29.55 -169.99 -5.02 14.39 16 4 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 7 C -0.31 -7.77 9.68 -14.94 -0.14 -7.91 16 8 H 0.11 2.82 7.16 -52.48 -0.38 2.44 16 9 N -0.55 -12.16 5.29 -10.96 -0.06 -12.22 16 10 C 0.43 8.51 7.85 -10.98 -0.09 8.43 16 11 O -0.60 -13.93 15.24 5.55 0.08 -13.85 16 12 C 0.11 1.48 5.39 -5.20 -0.03 1.45 16 13 N -0.71 -9.02 5.71 -59.81 -0.34 -9.36 16 14 C 0.24 2.61 6.65 -83.76 -0.56 2.05 16 15 C -0.16 -1.48 9.31 -39.36 -0.37 -1.85 16 16 C -0.08 -0.77 10.01 -39.57 -0.40 -1.17 16 17 C 0.05 0.60 7.29 -39.25 -0.29 0.32 16 18 F -0.13 -1.77 16.71 2.25 0.04 -1.74 16 19 C 0.14 1.64 6.15 -83.51 -0.51 1.13 16 20 N -0.33 -4.36 3.60 -7.94 -0.03 -4.39 16 21 N -0.07 -1.05 13.48 60.35 0.81 -0.24 16 22 N -0.04 -0.60 13.39 60.35 0.81 0.21 16 23 N -0.33 -4.65 11.82 32.75 0.39 -4.27 16 24 C 0.29 3.54 7.50 -155.21 -1.16 2.38 16 25 C -0.11 -0.95 5.05 -91.77 -0.46 -1.41 16 26 C -0.14 -0.96 10.15 -26.70 -0.27 -1.23 16 27 C -0.15 -1.02 10.24 -26.70 -0.27 -1.29 16 28 C -0.17 -1.79 8.50 -39.22 -0.33 -2.12 16 29 H 0.28 6.51 8.31 -40.82 -0.34 6.17 16 30 H 0.40 8.29 7.90 -40.82 -0.32 7.96 16 31 H 0.08 0.98 7.95 -51.93 -0.41 0.56 16 32 H 0.08 0.96 7.95 -51.93 -0.41 0.54 16 33 H 0.42 5.75 7.45 -40.82 -0.30 5.45 16 34 H 0.15 1.13 6.72 -52.48 -0.35 0.77 16 35 H 0.15 1.01 8.06 -52.48 -0.42 0.59 16 36 H 0.14 1.04 7.54 -51.93 -0.39 0.64 16 37 H 0.11 0.85 7.95 -51.93 -0.41 0.43 16 38 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.14 1.38 7.56 -52.48 -0.40 0.98 16 LS Contribution 367.40 15.07 5.54 5.54 Total: -1.00 -30.46 367.40 -6.25 -36.70 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -4.21 Total: 11.42 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -4.98 Total: -0.65 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: 2.30 Total: -51.82 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: 0.08 Total: -13.85 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.46 -6.25 -36.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425962569.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.670 kcal (2) G-P(sol) polarization free energy of solvation -30.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds