Wall clock time and date at job start Sat Apr 11 2020 07:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00297 * 2 1 4 4 H 1.48502 * 109.47018 * 273.11612 * 3 2 1 5 5 H 1.48504 * 109.46991 * 33.11385 * 3 2 1 6 6 H 1.48499 * 109.47148 * 153.11383 * 3 2 1 7 7 C 1.37883 * 119.99487 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00851 * 354.15212 * 7 2 1 9 9 C 1.50703 * 119.99414 * 174.42446 * 7 2 1 10 10 C 1.53000 * 115.55331 * 294.56871 * 9 7 2 11 11 N 1.46492 * 109.47112 * 294.93683 * 10 9 7 12 12 C 1.34781 * 120.00065 * 183.82356 * 11 10 9 13 13 O 1.21280 * 119.99601 * 5.07859 * 12 11 10 14 14 C 1.50693 * 120.00227 * 185.07332 * 12 11 10 15 15 C 1.53004 * 109.47428 * 185.63807 * 14 12 11 16 16 C 1.50702 * 109.47283 * 180.02562 * 15 14 12 17 17 O 1.21252 * 119.99740 * 359.97438 * 16 15 14 18 18 C 1.47162 * 119.99660 * 179.97438 * 16 15 14 19 19 C 1.39864 * 120.17459 * 359.72554 * 18 16 15 20 20 C 1.37869 * 119.82729 * 179.76494 * 19 18 16 21 21 C 1.38430 * 120.16990 * 0.53312 * 20 19 18 22 22 C 1.38380 * 120.34692 * 359.69994 * 21 20 19 23 23 N 1.48015 * 119.91238 * 180.02562 * 22 21 20 24 24 O 1.21803 * 119.99998 * 180.02562 * 23 22 21 25 25 O 1.21796 * 120.00254 * 0.02562 * 23 22 21 26 26 C 1.37912 * 120.17320 * 0.04022 * 22 21 20 27 27 C 1.53005 * 117.49626 * 148.90251 * 9 7 2 28 28 C 1.53001 * 117.49600 * 80.24130 * 9 7 2 29 29 H 0.96998 * 120.00070 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.46610 * 54.94045 * 10 9 7 31 31 H 1.09001 * 109.46719 * 174.93463 * 10 9 7 32 32 H 0.97007 * 120.00284 * 3.82973 * 11 10 9 33 33 H 1.09007 * 109.47396 * 305.63843 * 14 12 11 34 34 H 1.08998 * 109.47285 * 65.63919 * 14 12 11 35 35 H 1.08998 * 109.46776 * 300.00522 * 15 14 12 36 36 H 1.08998 * 109.46796 * 59.99813 * 15 14 12 37 37 H 1.07999 * 120.09082 * 0.02562 * 19 18 16 38 38 H 1.07997 * 119.91884 * 180.24954 * 20 19 18 39 39 H 1.08001 * 119.82655 * 179.71526 * 21 20 19 40 40 H 1.08003 * 120.08224 * 180.02562 * 26 22 21 41 41 H 1.09002 * 117.49847 * 359.97438 * 27 9 7 42 42 H 1.08997 * 117.49813 * 145.02101 * 27 9 7 43 43 H 1.09003 * 117.49800 * 214.97304 * 28 9 7 44 44 H 1.08995 * 117.50224 * 359.97438 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4307 2.0844 -1.3980 5 1 1.4811 2.6327 0.7649 6 1 3.5781 1.4219 0.6331 7 6 2.0044 -1.1942 -0.0005 8 1 1.4687 -2.1271 0.0943 9 6 3.5061 -1.1972 -0.1273 10 6 4.0569 -0.6857 -1.4600 11 7 3.6483 -1.5908 -2.5369 12 6 4.0846 -1.3817 -3.7949 13 8 4.8875 -0.5009 -4.0196 14 6 3.5748 -2.2422 -4.9220 15 6 4.3255 -1.8943 -6.2091 16 6 3.8152 -2.7544 -7.3364 17 8 2.9382 -3.5660 -7.1307 18 6 4.3815 -2.6093 -8.6870 19 6 5.3893 -1.6704 -8.9296 20 6 5.9182 -1.5438 -10.1965 21 6 5.4465 -2.3355 -11.2295 22 6 4.4462 -3.2634 -10.9986 23 7 3.9495 -4.1052 -12.1100 24 8 3.0688 -4.9222 -11.9087 25 8 4.4214 -3.9811 -13.2260 26 6 3.9108 -3.4056 -9.7356 27 6 4.2714 -2.3257 0.5668 28 6 4.3220 -0.9044 1.1334 29 1 -0.4850 0.8400 -0.0004 30 1 3.6651 0.3125 -1.6558 31 1 5.1451 -0.6459 -1.4120 32 1 3.0636 -2.3406 -2.3447 33 1 3.7371 -3.2925 -4.6794 34 1 2.5091 -2.0624 -5.0632 35 1 4.1633 -0.8441 -6.4517 36 1 5.3912 -2.0741 -6.0680 37 1 5.7553 -1.0490 -8.1257 38 1 6.6992 -0.8221 -10.3846 39 1 5.8616 -2.2285 -12.2208 40 1 3.1304 -4.1306 -9.5570 41 1 3.6887 -3.0656 1.1156 42 1 5.1674 -2.7033 0.0743 43 1 5.2515 -0.3478 1.0134 44 1 3.7728 -0.7093 2.0544 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451381666.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:45:32 Heat of formation + Delta-G solvation = -30.287940 kcal Electronic energy + Delta-G solvation = -28511.075526 eV Core-core repulsion = 24204.675085 eV Total energy + Delta-G solvation = -4306.400442 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.60698 -40.78481 -39.45390 -38.79592 -37.11532 -36.96612 -33.56636 -33.48477 -32.41718 -32.24944 -32.17771 -27.85285 -26.98720 -26.18131 -25.07491 -23.48794 -23.04427 -21.71174 -20.88182 -19.89650 -19.21013 -19.13213 -18.97344 -17.94056 -17.41135 -17.09083 -16.61787 -16.22981 -16.17547 -15.89089 -15.22180 -15.10026 -14.89499 -14.68579 -14.54896 -13.77989 -13.68048 -13.21496 -13.06291 -12.90776 -12.87707 -12.62371 -12.36811 -12.18059 -11.98952 -11.95730 -11.62717 -11.52512 -11.34096 -11.14340 -10.79381 -10.66903 -10.35919 -10.30487 -10.27988 -10.04908 -9.76443 -9.48660 -9.22431 -8.86623 -8.57567 -8.40250 -6.23833 -4.27084 -0.72220 -0.14833 0.77750 0.90112 1.70836 2.76479 2.94870 3.12514 3.21579 3.32232 3.37574 3.69921 3.76087 3.99784 4.08763 4.18433 4.24549 4.32040 4.51326 4.75932 4.82484 4.87021 4.92917 5.10244 5.12106 5.18549 5.26876 5.29770 5.48153 5.57363 5.61286 5.65486 5.78282 5.89349 5.93660 6.05548 6.13917 6.37116 6.42431 6.63655 6.86128 6.95244 6.97629 7.06281 7.20315 7.60051 8.04147 8.34457 8.61234 8.77779 9.39230 10.87087 Molecular weight = 346.14amu Principal moments of inertia in cm(-1) A = 0.020796 B = 0.001849 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.071308 B =15141.489618 C =15336.744408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.082 3.918 3 Si 0.866 3.134 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.249 1.249 7 C -0.491 4.491 8 H 0.078 0.922 9 C -0.020 4.020 10 C 0.153 3.847 11 N -0.699 5.699 12 C 0.507 3.493 13 O -0.564 6.564 14 C -0.134 4.134 15 C -0.147 4.147 16 C 0.396 3.604 17 O -0.434 6.434 18 C -0.161 4.161 19 C -0.022 4.022 20 C -0.126 4.126 21 C -0.030 4.030 22 C -0.057 4.057 23 N 0.028 4.972 24 O -0.153 6.153 25 O -0.157 6.157 26 C -0.002 4.002 27 C -0.180 4.180 28 C -0.185 4.185 29 H 0.266 0.734 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.409 0.591 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.158 0.842 38 H 0.156 0.844 39 H 0.158 0.842 40 H 0.165 0.835 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.169 -3.473 -19.485 23.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.121 4.121 3 Si 0.694 3.306 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.172 1.172 7 C -0.528 4.528 8 H 0.096 0.904 9 C -0.021 4.021 10 C 0.030 3.970 11 N -0.348 5.348 12 C 0.293 3.707 13 O -0.445 6.445 14 C -0.174 4.174 15 C -0.185 4.185 16 C 0.272 3.728 17 O -0.307 6.307 18 C -0.163 4.163 19 C -0.040 4.040 20 C -0.144 4.144 21 C -0.049 4.049 22 C -0.139 4.139 23 N 0.548 4.452 24 O -0.370 6.370 25 O -0.373 6.373 26 C -0.021 4.021 27 C -0.217 4.217 28 C -0.223 4.223 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.244 0.756 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.131 0.869 36 H 0.128 0.872 37 H 0.176 0.824 38 H 0.174 0.826 39 H 0.176 0.824 40 H 0.182 0.818 41 H 0.104 0.896 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 13.301 -2.752 -18.958 23.322 hybrid contribution -0.071 0.486 -0.222 0.538 sum 13.230 -2.267 -19.180 23.410 Atomic orbital electron populations 1.69888 1.06373 1.27323 1.49142 1.24931 0.94524 0.99103 0.93579 0.87029 0.81555 0.83584 0.78449 1.20473 1.21779 1.17221 1.20229 0.86471 0.94624 1.51430 0.90366 1.19629 0.94880 0.99219 0.88365 1.21093 0.96886 0.92626 0.86440 1.45869 1.50088 1.31638 1.07173 1.20446 0.81502 0.84653 0.84118 1.90641 1.34844 1.34798 1.84185 1.21449 1.02384 1.01264 0.92307 1.21766 1.02616 1.01506 0.92570 1.22502 0.80695 0.81791 0.87780 1.90600 1.24796 1.30625 1.84704 1.20636 1.00402 0.99461 0.95816 1.22105 0.90813 0.93089 0.97984 1.21281 1.01376 1.00160 0.91633 1.21366 0.91271 0.90300 1.01979 1.21046 1.04207 1.00679 0.88007 1.43575 0.99528 1.00122 1.01976 1.94592 1.22866 1.29793 1.89768 1.94542 1.60176 1.73711 1.08920 1.21325 0.96102 0.95858 0.88861 1.22804 1.01475 0.91893 1.05529 1.23034 1.01197 0.98133 0.99917 0.92412 0.92487 0.93205 0.75602 0.88390 0.87832 0.86943 0.87225 0.82414 0.82592 0.82417 0.81775 0.89569 0.90920 0.91123 0.89265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.70 13.96 55.43 0.77 -24.92 16 2 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 3 Si 0.87 20.58 24.97 -169.99 -4.25 16.33 16 4 H -0.28 -6.70 7.01 56.52 0.40 -6.30 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.25 -5.53 5.73 56.52 0.32 -5.21 16 7 C -0.49 -12.46 9.16 -34.44 -0.32 -12.78 16 8 H 0.08 2.16 8.06 -52.49 -0.42 1.74 16 9 C -0.02 -0.42 0.84 -155.66 -0.13 -0.55 16 10 C 0.15 3.09 5.15 -4.05 -0.02 3.07 16 11 N -0.70 -12.29 5.48 -60.30 -0.33 -12.62 16 12 C 0.51 8.08 7.82 -10.99 -0.09 7.99 16 13 O -0.56 -10.41 15.98 5.56 0.09 -10.32 16 14 C -0.13 -1.56 4.99 -27.88 -0.14 -1.70 16 15 C -0.15 -1.31 3.62 -27.88 -0.10 -1.41 16 16 C 0.40 3.59 7.12 -30.69 -0.22 3.37 16 17 O -0.43 -5.28 15.98 5.58 0.09 -5.19 16 18 C -0.16 -1.18 5.87 -105.07 -0.62 -1.80 16 19 C -0.02 -0.10 9.47 -39.11 -0.37 -0.47 16 20 C -0.13 -0.46 10.03 -39.65 -0.40 -0.86 16 21 C -0.03 -0.16 9.55 -39.46 -0.38 -0.54 16 22 C -0.06 -0.47 6.84 -80.02 -0.55 -1.02 16 23 N 0.03 0.30 4.45 33.93 0.15 0.45 16 24 O -0.15 -1.87 18.44 -29.46 -0.54 -2.41 16 25 O -0.16 -1.74 18.44 -29.46 -0.54 -2.28 16 26 C 0.00 -0.02 9.10 -39.10 -0.36 -0.38 16 27 C -0.18 -3.30 9.96 -26.69 -0.27 -3.57 16 28 C -0.18 -3.62 8.03 -26.69 -0.21 -3.84 16 29 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.06 1.28 5.05 -51.93 -0.26 1.02 16 31 H 0.05 0.96 8.07 -51.93 -0.42 0.54 16 32 H 0.41 6.79 8.34 -40.82 -0.34 6.45 16 33 H 0.10 1.02 8.10 -51.92 -0.42 0.60 16 34 H 0.10 1.23 8.10 -51.93 -0.42 0.81 16 35 H 0.11 0.94 7.98 -51.93 -0.41 0.52 16 36 H 0.11 0.82 8.10 -51.93 -0.42 0.40 16 37 H 0.16 0.42 7.05 -52.49 -0.37 0.05 16 38 H 0.16 0.11 8.06 -52.49 -0.42 -0.31 16 39 H 0.16 0.60 7.60 -52.49 -0.40 0.20 16 40 H 0.16 1.50 7.19 -52.48 -0.38 1.12 16 41 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 42 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 44 H 0.09 1.81 8.14 -51.93 -0.42 1.38 16 LS Contribution 383.13 15.07 5.77 5.77 Total: -1.00 -32.77 383.13 -8.64 -41.41 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -5.60 Total: 6.14 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -4.25 Total: -12.35 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.59 Total: -37.10 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.91 Total: -20.20 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.25 Total: 16.33 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.77 -8.64 -41.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451381666.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.118 kcal (2) G-P(sol) polarization free energy of solvation -32.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds