Wall clock time and date at job start Sat Apr 11 2020 07:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00297 * 2 1 4 4 H 1.48502 * 109.47018 * 273.11612 * 3 2 1 5 5 H 1.48504 * 109.46991 * 33.11385 * 3 2 1 6 6 H 1.48499 * 109.47148 * 153.11383 * 3 2 1 7 7 C 1.37883 * 119.99487 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00851 * 354.15212 * 7 2 1 9 9 C 1.50703 * 119.99414 * 174.42446 * 7 2 1 10 10 C 1.53000 * 115.55331 * 294.56871 * 9 7 2 11 11 N 1.46492 * 109.47112 * 294.93683 * 10 9 7 12 12 C 1.34781 * 120.00065 * 183.82356 * 11 10 9 13 13 O 1.21280 * 119.99601 * 5.07859 * 12 11 10 14 14 C 1.50693 * 120.00227 * 185.07332 * 12 11 10 15 15 C 1.53004 * 109.47428 * 185.63807 * 14 12 11 16 16 C 1.50702 * 109.47283 * 180.02562 * 15 14 12 17 17 O 1.21252 * 119.99740 * 359.97438 * 16 15 14 18 18 C 1.47162 * 119.99660 * 179.97438 * 16 15 14 19 19 C 1.39864 * 120.17459 * 359.72554 * 18 16 15 20 20 C 1.37869 * 119.82729 * 179.76494 * 19 18 16 21 21 C 1.38430 * 120.16990 * 0.53312 * 20 19 18 22 22 C 1.38380 * 120.34692 * 359.69994 * 21 20 19 23 23 N 1.48015 * 119.91238 * 180.02562 * 22 21 20 24 24 O 1.21803 * 119.99998 * 180.02562 * 23 22 21 25 25 O 1.21796 * 120.00254 * 0.02562 * 23 22 21 26 26 C 1.37912 * 120.17320 * 0.04022 * 22 21 20 27 27 C 1.53005 * 117.49626 * 148.90251 * 9 7 2 28 28 C 1.53001 * 117.49600 * 80.24130 * 9 7 2 29 29 H 0.96998 * 120.00070 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.46610 * 54.94045 * 10 9 7 31 31 H 1.09001 * 109.46719 * 174.93463 * 10 9 7 32 32 H 0.97007 * 120.00284 * 3.82973 * 11 10 9 33 33 H 1.09007 * 109.47396 * 305.63843 * 14 12 11 34 34 H 1.08998 * 109.47285 * 65.63919 * 14 12 11 35 35 H 1.08998 * 109.46776 * 300.00522 * 15 14 12 36 36 H 1.08998 * 109.46796 * 59.99813 * 15 14 12 37 37 H 1.07999 * 120.09082 * 0.02562 * 19 18 16 38 38 H 1.07997 * 119.91884 * 180.24954 * 20 19 18 39 39 H 1.08001 * 119.82655 * 179.71526 * 21 20 19 40 40 H 1.08003 * 120.08224 * 180.02562 * 26 22 21 41 41 H 1.09002 * 117.49847 * 359.97438 * 27 9 7 42 42 H 1.08997 * 117.49813 * 145.02101 * 27 9 7 43 43 H 1.09003 * 117.49800 * 214.97304 * 28 9 7 44 44 H 1.08995 * 117.50224 * 359.97438 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4307 2.0844 -1.3980 5 1 1.4811 2.6327 0.7649 6 1 3.5781 1.4219 0.6331 7 6 2.0044 -1.1942 -0.0005 8 1 1.4687 -2.1271 0.0943 9 6 3.5061 -1.1972 -0.1273 10 6 4.0569 -0.6857 -1.4600 11 7 3.6483 -1.5908 -2.5369 12 6 4.0846 -1.3817 -3.7949 13 8 4.8875 -0.5009 -4.0196 14 6 3.5748 -2.2422 -4.9220 15 6 4.3255 -1.8943 -6.2091 16 6 3.8152 -2.7544 -7.3364 17 8 2.9382 -3.5660 -7.1307 18 6 4.3815 -2.6093 -8.6870 19 6 5.3893 -1.6704 -8.9296 20 6 5.9182 -1.5438 -10.1965 21 6 5.4465 -2.3355 -11.2295 22 6 4.4462 -3.2634 -10.9986 23 7 3.9495 -4.1052 -12.1100 24 8 3.0688 -4.9222 -11.9087 25 8 4.4214 -3.9811 -13.2260 26 6 3.9108 -3.4056 -9.7356 27 6 4.2714 -2.3257 0.5668 28 6 4.3220 -0.9044 1.1334 29 1 -0.4850 0.8400 -0.0004 30 1 3.6651 0.3125 -1.6558 31 1 5.1451 -0.6459 -1.4120 32 1 3.0636 -2.3406 -2.3447 33 1 3.7371 -3.2925 -4.6794 34 1 2.5091 -2.0624 -5.0632 35 1 4.1633 -0.8441 -6.4517 36 1 5.3912 -2.0741 -6.0680 37 1 5.7553 -1.0490 -8.1257 38 1 6.6992 -0.8221 -10.3846 39 1 5.8616 -2.2285 -12.2208 40 1 3.1304 -4.1306 -9.5570 41 1 3.6887 -3.0656 1.1156 42 1 5.1674 -2.7033 0.0743 43 1 5.2515 -0.3478 1.0134 44 1 3.7728 -0.7093 2.0544 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451381666.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:45:31 Heat of formation + Delta-G solvation = -50.464828 kcal Electronic energy + Delta-G solvation = -28511.950462 eV Core-core repulsion = 24204.675085 eV Total energy + Delta-G solvation = -4307.275377 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.36463 -41.49195 -40.63451 -39.54100 -38.67805 -37.78410 -34.94526 -34.31226 -34.26458 -33.10966 -32.67995 -29.07899 -27.96607 -27.48595 -26.41391 -24.30609 -23.58483 -23.22432 -21.65167 -21.26656 -20.77518 -19.86253 -19.73872 -18.71449 -18.67266 -18.00562 -17.70368 -17.20257 -16.96489 -16.85728 -16.69302 -16.42464 -15.89523 -15.56050 -15.24239 -15.13938 -14.90013 -14.56414 -14.25634 -14.08123 -13.95876 -13.55280 -13.47866 -13.20505 -13.01065 -12.83221 -12.75170 -12.66238 -12.40360 -12.37716 -12.19725 -12.17585 -12.07973 -11.48077 -11.05968 -11.02767 -10.89792 -10.78878 -10.69670 -10.53378 -10.32308 -9.87575 -8.31251 -6.35773 -1.36738 -0.71909 0.15903 0.23886 1.09387 1.31740 1.38215 1.48761 1.68734 2.20079 2.26603 2.34606 2.70323 3.01130 3.30378 3.35099 3.47936 3.53881 3.67625 3.78642 3.83131 3.99805 4.08565 4.10513 4.28377 4.32485 4.46764 4.47207 4.54499 4.58784 4.67976 4.81673 4.82975 4.85494 4.88362 4.92142 4.96585 5.04822 5.09011 5.27978 5.34327 5.50771 5.59615 5.68843 6.27297 6.29234 6.34941 6.66996 6.75552 7.29842 7.33237 8.83148 Molecular weight = 346.14amu Principal moments of inertia in cm(-1) A = 0.020796 B = 0.001849 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.071308 B =15141.489618 C =15336.744408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.029 3.971 3 Si 0.920 3.080 4 H -0.284 1.284 5 H -0.298 1.298 6 H -0.222 1.222 7 C -0.476 4.476 8 H 0.042 0.958 9 C -0.045 4.045 10 C 0.160 3.840 11 N -0.707 5.707 12 C 0.508 3.492 13 O -0.585 6.585 14 C -0.129 4.129 15 C -0.142 4.142 16 C 0.406 3.594 17 O -0.476 6.476 18 C -0.172 4.172 19 C -0.004 4.004 20 C -0.108 4.108 21 C -0.022 4.022 22 C -0.074 4.074 23 N 0.029 4.971 24 O -0.209 6.209 25 O -0.148 6.148 26 C -0.016 4.016 27 C -0.155 4.155 28 C -0.182 4.182 29 H 0.264 0.736 30 H 0.032 0.968 31 H 0.065 0.935 32 H 0.411 0.589 33 H 0.110 0.890 34 H 0.098 0.902 35 H 0.124 0.876 36 H 0.132 0.868 37 H 0.188 0.812 38 H 0.200 0.800 39 H 0.178 0.822 40 H 0.143 0.857 41 H 0.082 0.918 42 H 0.102 0.898 43 H 0.095 0.905 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.311 -1.877 -20.124 26.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.170 4.170 3 Si 0.746 3.254 4 H -0.211 1.211 5 H -0.226 1.226 6 H -0.144 1.144 7 C -0.514 4.514 8 H 0.060 0.940 9 C -0.047 4.047 10 C 0.036 3.964 11 N -0.356 5.356 12 C 0.296 3.704 13 O -0.467 6.467 14 C -0.169 4.169 15 C -0.179 4.179 16 C 0.285 3.715 17 O -0.352 6.352 18 C -0.174 4.174 19 C -0.022 4.022 20 C -0.126 4.126 21 C -0.041 4.041 22 C -0.157 4.157 23 N 0.544 4.456 24 O -0.414 6.414 25 O -0.371 6.371 26 C -0.036 4.036 27 C -0.192 4.192 28 C -0.220 4.220 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.247 0.753 33 H 0.129 0.871 34 H 0.116 0.884 35 H 0.142 0.858 36 H 0.150 0.850 37 H 0.205 0.795 38 H 0.217 0.783 39 H 0.196 0.804 40 H 0.161 0.839 41 H 0.101 0.899 42 H 0.120 0.880 43 H 0.113 0.887 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 17.410 -1.227 -19.562 26.216 hybrid contribution -1.259 -0.003 -0.037 1.260 sum 16.151 -1.230 -19.599 25.426 Atomic orbital electron populations 1.70024 1.08113 1.27864 1.52125 1.25649 0.95000 1.02380 0.93949 0.86181 0.81497 0.79696 0.78058 1.21053 1.22573 1.14371 1.20374 0.89006 0.92817 1.49164 0.93997 1.19496 0.92507 1.02729 0.89923 1.20861 0.97456 0.91766 0.86287 1.45936 1.50553 1.31526 1.07566 1.21048 0.80677 0.84492 0.84162 1.90621 1.35820 1.35799 1.84429 1.21441 1.02254 1.01115 0.92072 1.21798 1.03387 1.01926 0.90809 1.22676 0.79635 0.80675 0.88557 1.90601 1.26772 1.32531 1.85340 1.20503 1.01817 1.00737 0.94348 1.22498 0.88820 0.91504 0.99400 1.21780 1.01121 0.99491 0.90193 1.21781 0.89695 0.88944 1.03668 1.21193 1.05890 1.01749 0.86914 1.43954 0.99075 1.00034 1.02500 1.94594 1.24781 1.31907 1.90139 1.94492 1.59489 1.73216 1.09855 1.21230 0.96323 0.96308 0.89706 1.22842 1.01494 0.91117 1.03781 1.23080 1.01382 0.99362 0.98143 0.92703 0.94983 0.91644 0.75345 0.87148 0.88380 0.85820 0.84973 0.79498 0.78296 0.80449 0.83923 0.89931 0.87990 0.88677 0.90261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.18 13.96 21.45 0.30 -55.88 16 2 C 0.03 1.57 5.47 84.66 0.46 2.03 16 3 Si 0.92 42.51 24.97 68.60 1.71 44.22 16 4 H -0.28 -13.27 7.01 99.48 0.70 -12.57 16 5 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.22 -9.12 5.73 99.48 0.57 -8.55 16 7 C -0.48 -24.45 9.16 25.60 0.23 -24.22 16 8 H 0.04 2.40 8.06 -2.91 -0.02 2.38 16 9 C -0.05 -1.85 0.84 -52.92 -0.04 -1.89 16 10 C 0.16 6.14 5.15 86.38 0.44 6.59 16 11 N -0.71 -23.89 5.48 -463.07 -2.54 -26.42 16 12 C 0.51 15.24 7.82 87.65 0.69 15.92 16 13 O -0.58 -20.06 15.98 -3.03 -0.05 -20.10 16 14 C -0.13 -2.81 4.99 29.85 0.15 -2.66 16 15 C -0.14 -2.15 3.62 29.85 0.11 -2.04 16 16 C 0.41 6.88 7.12 28.03 0.20 7.08 16 17 O -0.48 -11.84 15.98 -2.94 -0.05 -11.88 16 18 C -0.17 -2.22 5.87 -20.15 -0.12 -2.34 16 19 C 0.00 -0.02 9.47 22.58 0.21 0.19 16 20 C -0.11 -0.24 10.03 22.23 0.22 -0.02 16 21 C -0.02 -0.17 9.55 22.35 0.21 0.04 16 22 C -0.07 -1.19 6.84 36.33 0.25 -0.94 16 23 N 0.03 0.65 4.45 -46.57 -0.21 0.44 16 24 O -0.21 -5.61 18.44 18.88 0.35 -5.27 16 25 O -0.15 -3.24 18.44 18.89 0.35 -2.89 16 26 C -0.02 -0.28 9.10 22.58 0.21 -0.07 16 27 C -0.16 -5.25 9.96 30.62 0.30 -4.95 16 28 C -0.18 -6.57 8.03 30.62 0.25 -6.33 16 29 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 30 H 0.03 1.39 5.05 -2.39 -0.01 1.37 16 31 H 0.07 2.30 8.07 -2.39 -0.02 2.28 16 32 H 0.41 13.40 8.34 -92.70 -0.77 12.63 16 33 H 0.11 2.14 8.10 -2.38 -0.02 2.12 16 34 H 0.10 2.29 8.10 -2.39 -0.02 2.27 16 35 H 0.12 1.65 7.98 -2.39 -0.02 1.63 16 36 H 0.13 1.45 8.10 -2.39 -0.02 1.43 16 37 H 0.19 -0.11 7.05 -2.91 -0.02 -0.13 16 38 H 0.20 -1.13 8.06 -2.91 -0.02 -1.16 16 39 H 0.18 0.68 7.60 -2.91 -0.02 0.66 16 40 H 0.14 2.99 7.19 -2.91 -0.02 2.97 16 41 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 42 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 43 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 44 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -75.20 383.13 3.78 -71.42 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.13 Total: 19.96 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: 3.78 Total: -13.60 kcal Atomic # 7 Polarization: -79.41 SS G_CDS: -2.44 Total: -81.85 kcal Atomic # 8 Polarization: -40.74 SS G_CDS: 0.60 Total: -40.14 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 1.71 Total: 44.22 kcal Total: -75.20 3.78 -71.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451381666.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.954 kcal (2) G-P(sol) polarization free energy of solvation -75.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds