Wall clock time and date at job start Sat Apr 11 2020 07:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99494 * 2 1 4 4 H 1.48504 * 109.47262 * 239.99866 * 3 2 1 5 5 H 1.48498 * 109.47560 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47090 * 120.00206 * 3 2 1 7 7 C 1.38691 * 120.00243 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00066 * 179.97438 * 7 2 1 9 9 O 1.34809 * 120.00284 * 0.02562 * 7 2 1 10 10 C 1.35523 * 117.00423 * 174.95962 * 9 7 2 11 11 C 1.38830 * 120.15926 * 5.38002 * 10 9 7 12 12 C 1.38025 * 120.07250 * 179.73010 * 11 10 9 13 13 C 1.38571 * 120.40260 * 0.30003 * 12 11 10 14 14 C 1.37830 * 120.31919 * 0.02562 * 13 12 11 15 15 C 1.39660 * 119.92302 * 359.97438 * 14 13 12 16 16 C 1.47540 * 120.19776 * 179.97438 * 15 14 13 17 17 O 1.21587 * 120.00150 * 233.99296 * 16 15 14 18 18 N 1.34779 * 119.99794 * 54.00219 * 16 15 14 19 19 C 1.46987 * 120.68329 * 5.50445 * 18 16 15 20 20 C 1.53757 * 108.33725 * 124.50974 * 19 18 16 21 21 N 1.47558 * 108.55708 * 50.27302 * 20 19 18 22 22 C 1.34193 * 118.33129 * 124.91514 * 21 20 19 23 23 O 1.21507 * 118.94349 * 357.23440 * 22 21 20 24 24 O 1.34390 * 122.12120 * 177.21330 * 22 21 20 25 25 C 1.45650 * 115.55514 * 335.35390 * 24 22 21 26 26 C 1.52115 * 107.27424 * 54.52277 * 25 24 22 27 27 C 1.45990 * 118.42831 * 304.52918 * 21 20 19 28 28 H 1.09002 * 108.72356 * 296.31471 * 27 21 20 29 29 C 1.46954 * 120.68448 * 185.79061 * 18 16 15 30 30 H 0.96996 * 120.00303 * 359.97438 * 1 2 3 31 31 H 1.08008 * 119.96457 * 0.02562 * 11 10 9 32 32 H 1.08005 * 119.80148 * 180.28277 * 12 11 10 33 33 H 1.08000 * 119.83967 * 179.97438 * 13 12 11 34 34 H 1.08009 * 120.03697 * 179.97438 * 14 13 12 35 35 H 1.08998 * 109.61197 * 244.27975 * 19 18 16 36 36 H 1.08997 * 109.61519 * 4.81308 * 19 18 16 37 37 H 1.09005 * 109.74973 * 290.48728 * 20 19 18 38 38 H 1.09003 * 109.53282 * 169.93574 * 20 19 18 39 39 H 1.08996 * 109.76509 * 173.84468 * 25 24 22 40 40 H 1.09009 * 109.75140 * 294.54736 * 25 24 22 41 41 H 1.09003 * 108.41502 * 180.75261 * 26 25 24 42 42 H 1.08995 * 109.72025 * 61.66084 * 26 25 24 43 43 H 1.08999 * 109.59854 * 354.42053 * 29 18 16 44 44 H 1.08998 * 109.60060 * 114.90076 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0087 -1.2011 -0.0005 8 1 3.0887 -1.2010 -0.0010 9 8 1.3348 -2.3686 -0.0016 10 6 2.0689 -3.5028 -0.1081 11 6 3.4557 -3.4395 -0.0977 12 6 4.2016 -4.5963 -0.2008 13 6 3.5750 -5.8263 -0.3214 14 6 2.1993 -5.9075 -0.3403 15 6 1.4313 -4.7456 -0.2369 16 6 -0.0418 -4.8254 -0.2570 17 8 -0.6757 -4.1627 -1.0553 18 7 -0.6848 -5.6327 0.6097 19 6 0.0555 -6.3478 1.6592 20 6 -0.5673 -5.9911 3.0190 21 7 -2.0272 -6.1878 2.9330 22 6 -2.6149 -6.9952 3.8294 23 8 -1.9222 -7.5726 4.6438 24 8 -3.9450 -7.1853 3.8558 25 6 -4.7449 -6.1098 3.2859 26 6 -4.2359 -5.8681 1.8730 27 6 -2.7620 -5.4886 1.8831 28 1 -2.6782 -4.4151 2.0529 29 6 -2.1395 -5.8212 0.5212 30 1 -0.4850 0.8400 0.0004 31 1 3.9515 -2.4845 -0.0041 32 1 5.2803 -4.5424 -0.1876 33 1 4.1676 -6.7257 -0.4018 34 1 1.7156 -6.8686 -0.4349 35 1 -0.0171 -7.4222 1.4907 36 1 1.1015 -6.0419 1.6422 37 1 -0.3519 -4.9504 3.2611 38 1 -0.1552 -6.6417 3.7904 39 1 -5.7934 -6.4061 3.2561 40 1 -4.6338 -5.2087 3.8892 41 1 -4.8141 -5.0556 1.4329 42 1 -4.3720 -6.7685 1.2740 43 1 -2.5485 -5.1567 -0.2399 44 1 -2.3589 -6.8569 0.2619 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000494033691.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:45:38 Heat of formation + Delta-G solvation = -87.995058 kcal Electronic energy + Delta-G solvation = -31323.298119 eV Core-core repulsion = 27014.395309 eV Total energy + Delta-G solvation = -4308.902810 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.141 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.38055 -39.89661 -38.59101 -37.43863 -37.01018 -36.45775 -34.20574 -32.91363 -32.43093 -30.86116 -29.82723 -29.07647 -27.61486 -25.53601 -24.98542 -23.67247 -22.93011 -22.04237 -21.56476 -19.81313 -19.46160 -18.16964 -18.11386 -17.37837 -16.92172 -16.34223 -16.27476 -15.88915 -15.27389 -15.15649 -14.84798 -14.66496 -14.48228 -14.37073 -14.19036 -13.79902 -13.75005 -13.63203 -13.10130 -12.94773 -12.61066 -12.48066 -12.18410 -12.09791 -11.80229 -11.69852 -11.47999 -11.38318 -11.31190 -11.18020 -10.94222 -10.87348 -10.81860 -10.54270 -10.33504 -9.71527 -9.30791 -9.17060 -8.95363 -8.36125 -8.24488 -7.42624 -6.54903 -4.15008 1.72247 2.20058 2.30506 2.57139 3.06407 3.08640 3.10953 3.13290 3.33011 3.40011 3.86475 4.19224 4.30304 4.39933 4.56208 4.67073 4.81558 4.93678 4.96661 5.02651 5.08562 5.10044 5.19095 5.25793 5.37327 5.46531 5.51736 5.59902 5.63192 5.70593 5.73839 5.88695 5.92923 6.06596 6.07451 6.30442 6.47400 6.52864 6.70812 6.86526 6.96218 7.15717 7.20839 7.54819 7.58655 7.68677 7.86354 7.95053 8.72020 8.87701 9.54025 10.60618 Molecular weight = 346.14amu Principal moments of inertia in cm(-1) A = 0.011398 B = 0.003671 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.969267 B = 7626.045281 C = 8971.533202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.045 3.955 3 Si 0.942 3.058 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.399 4.399 8 H 0.094 0.906 9 O -0.150 6.150 10 C 0.187 3.813 11 C -0.233 4.233 12 C -0.054 4.054 13 C -0.222 4.222 14 C -0.043 4.043 15 C -0.219 4.219 16 C 0.582 3.418 17 O -0.515 6.515 18 N -0.620 5.620 19 C 0.097 3.903 20 C 0.103 3.897 21 N -0.612 5.612 22 C 0.654 3.346 23 O -0.536 6.536 24 O -0.347 6.347 25 C 0.064 3.936 26 C -0.166 4.166 27 C 0.124 3.876 28 H 0.090 0.910 29 C 0.110 3.890 30 H 0.272 0.728 31 H 0.132 0.868 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.070 0.930 36 H 0.110 0.890 37 H 0.081 0.919 38 H 0.111 0.889 39 H 0.118 0.882 40 H 0.078 0.922 41 H 0.106 0.894 42 H 0.089 0.911 43 H 0.108 0.892 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.425 -10.784 3.598 12.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.162 4.162 3 Si 0.766 3.234 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.475 4.475 8 H 0.112 0.888 9 O -0.051 6.051 10 C 0.130 3.870 11 C -0.252 4.252 12 C -0.072 4.072 13 C -0.241 4.241 14 C -0.061 4.061 15 C -0.224 4.224 16 C 0.372 3.628 17 O -0.388 6.388 18 N -0.356 5.356 19 C -0.027 4.027 20 C -0.019 4.019 21 N -0.358 5.358 22 C 0.408 3.592 23 O -0.421 6.421 24 O -0.259 6.259 25 C -0.010 4.010 26 C -0.205 4.205 27 C 0.019 3.981 28 H 0.108 0.892 29 C -0.014 4.014 30 H 0.082 0.918 31 H 0.150 0.850 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.133 0.867 35 H 0.089 0.911 36 H 0.128 0.872 37 H 0.099 0.901 38 H 0.129 0.871 39 H 0.136 0.864 40 H 0.096 0.904 41 H 0.124 0.876 42 H 0.108 0.892 43 H 0.127 0.873 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.093 -10.627 3.668 12.342 hybrid contribution 0.503 1.022 -0.171 1.152 sum -4.590 -9.605 3.497 11.205 Atomic orbital electron populations 1.70051 1.06036 1.28001 1.43712 1.25344 0.95830 0.98942 0.96067 0.85774 0.78786 0.79543 0.79317 1.19304 1.20158 1.19361 1.21359 0.91853 0.80653 1.53641 0.88826 1.83982 1.34263 1.11357 1.75455 1.19160 0.89987 0.86968 0.90925 1.21148 0.93251 0.99395 1.11433 1.20912 0.98773 0.92248 0.95293 1.20496 0.93929 0.97222 1.12422 1.20715 0.93709 0.95452 0.96260 1.18655 0.91678 0.92349 1.19681 1.18268 0.87558 0.77304 0.79676 1.90790 1.68047 1.41348 1.38657 1.47962 1.06747 1.47996 1.32869 1.22265 0.97970 0.96636 0.85861 1.22348 0.77401 1.03382 0.98765 1.47563 1.09565 1.47822 1.30848 1.17976 0.81280 0.79187 0.80732 1.90958 1.59295 1.51265 1.40568 1.86889 1.16425 1.44648 1.77898 1.23222 0.95483 0.89423 0.92876 1.22103 0.94913 1.05157 0.98278 1.21329 0.90741 0.97888 0.88119 0.89182 1.21888 0.81312 1.02013 0.96192 0.91773 0.84999 0.87052 0.87048 0.86713 0.91143 0.87195 0.90067 0.87113 0.86411 0.90360 0.87606 0.89215 0.87349 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.39 13.67 55.48 0.76 -23.63 16 2 C 0.04 1.20 5.49 -17.52 -0.10 1.11 16 3 Si 0.94 19.88 29.55 -169.99 -5.02 14.86 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.40 -10.82 9.49 30.90 0.29 -10.53 16 8 H 0.09 2.30 5.20 -52.48 -0.27 2.03 16 9 O -0.15 -4.19 8.96 -2.10 -0.02 -4.21 16 10 C 0.19 4.36 6.65 -38.60 -0.26 4.11 16 11 C -0.23 -4.72 9.16 -39.44 -0.36 -5.08 16 12 C -0.05 -0.89 10.03 -39.54 -0.40 -1.29 16 13 C -0.22 -3.41 10.03 -39.61 -0.40 -3.81 16 14 C -0.04 -0.70 7.73 -39.20 -0.30 -1.00 16 15 C -0.22 -4.46 4.64 -104.81 -0.49 -4.94 16 16 C 0.58 12.01 6.82 -12.47 -0.09 11.93 16 17 O -0.51 -12.84 16.19 2.39 0.04 -12.80 16 18 N -0.62 -9.84 2.94 -173.45 -0.51 -10.35 16 19 C 0.10 1.28 5.80 -3.38 -0.02 1.26 16 20 C 0.10 1.36 6.52 -3.07 -0.02 1.34 16 21 N -0.61 -7.98 2.94 -171.42 -0.50 -8.48 16 22 C 0.65 9.51 8.29 53.79 0.45 9.96 16 23 O -0.54 -9.48 16.25 -19.36 -0.31 -9.79 16 24 O -0.35 -4.37 10.55 -39.72 -0.42 -4.79 16 25 C 0.06 0.51 7.16 36.71 0.26 0.78 16 26 C -0.17 -1.32 5.54 -27.59 -0.15 -1.47 16 27 C 0.12 1.44 3.22 -68.41 -0.22 1.22 16 28 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 29 C 0.11 1.45 5.83 -3.59 -0.02 1.42 16 30 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.13 2.65 5.64 -52.48 -0.30 2.35 16 32 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 33 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.11 1.57 7.75 -52.48 -0.41 1.16 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.11 1.50 5.29 -51.93 -0.27 1.23 16 37 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.11 1.43 6.73 -51.93 -0.35 1.08 16 39 H 0.12 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 41 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.09 0.65 7.75 -51.93 -0.40 0.25 16 43 H 0.11 1.57 7.00 -51.93 -0.36 1.21 16 44 H 0.07 0.77 7.93 -51.93 -0.41 0.36 16 LS Contribution 361.37 15.07 5.45 5.45 Total: -1.00 -35.58 361.37 -7.66 -43.23 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -5.30 Total: 5.53 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -1.81 Total: 5.00 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: -0.26 Total: -42.46 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -0.71 Total: -31.59 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.58 -7.66 -43.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494033691.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.763 kcal (2) G-P(sol) polarization free energy of solvation -35.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds