Wall clock time and date at job start Sat Apr 11 2020 07:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99494 * 2 1 4 4 H 1.48504 * 109.47262 * 239.99866 * 3 2 1 5 5 H 1.48498 * 109.47560 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47090 * 120.00206 * 3 2 1 7 7 C 1.38691 * 120.00243 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00066 * 179.97438 * 7 2 1 9 9 O 1.34809 * 120.00284 * 0.02562 * 7 2 1 10 10 C 1.35523 * 117.00423 * 174.95962 * 9 7 2 11 11 C 1.38830 * 120.15926 * 5.38002 * 10 9 7 12 12 C 1.38025 * 120.07250 * 179.73010 * 11 10 9 13 13 C 1.38571 * 120.40260 * 0.30003 * 12 11 10 14 14 C 1.37830 * 120.31919 * 0.02562 * 13 12 11 15 15 C 1.39660 * 119.92302 * 359.97438 * 14 13 12 16 16 C 1.47540 * 120.19776 * 179.97438 * 15 14 13 17 17 O 1.21587 * 120.00150 * 233.99296 * 16 15 14 18 18 N 1.34779 * 119.99794 * 54.00219 * 16 15 14 19 19 C 1.46987 * 120.68329 * 5.50445 * 18 16 15 20 20 C 1.53757 * 108.33725 * 124.50974 * 19 18 16 21 21 N 1.47558 * 108.55708 * 50.27302 * 20 19 18 22 22 C 1.34193 * 118.33129 * 124.91514 * 21 20 19 23 23 O 1.21507 * 118.94349 * 357.23440 * 22 21 20 24 24 O 1.34390 * 122.12120 * 177.21330 * 22 21 20 25 25 C 1.45650 * 115.55514 * 335.35390 * 24 22 21 26 26 C 1.52115 * 107.27424 * 54.52277 * 25 24 22 27 27 C 1.45990 * 118.42831 * 304.52918 * 21 20 19 28 28 H 1.09002 * 108.72356 * 296.31471 * 27 21 20 29 29 C 1.46954 * 120.68448 * 185.79061 * 18 16 15 30 30 H 0.96996 * 120.00303 * 359.97438 * 1 2 3 31 31 H 1.08008 * 119.96457 * 0.02562 * 11 10 9 32 32 H 1.08005 * 119.80148 * 180.28277 * 12 11 10 33 33 H 1.08000 * 119.83967 * 179.97438 * 13 12 11 34 34 H 1.08009 * 120.03697 * 179.97438 * 14 13 12 35 35 H 1.08998 * 109.61197 * 244.27975 * 19 18 16 36 36 H 1.08997 * 109.61519 * 4.81308 * 19 18 16 37 37 H 1.09005 * 109.74973 * 290.48728 * 20 19 18 38 38 H 1.09003 * 109.53282 * 169.93574 * 20 19 18 39 39 H 1.08996 * 109.76509 * 173.84468 * 25 24 22 40 40 H 1.09009 * 109.75140 * 294.54736 * 25 24 22 41 41 H 1.09003 * 108.41502 * 180.75261 * 26 25 24 42 42 H 1.08995 * 109.72025 * 61.66084 * 26 25 24 43 43 H 1.08999 * 109.59854 * 354.42053 * 29 18 16 44 44 H 1.08998 * 109.60060 * 114.90076 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0087 -1.2011 -0.0005 8 1 3.0887 -1.2010 -0.0010 9 8 1.3348 -2.3686 -0.0016 10 6 2.0689 -3.5028 -0.1081 11 6 3.4557 -3.4395 -0.0977 12 6 4.2016 -4.5963 -0.2008 13 6 3.5750 -5.8263 -0.3214 14 6 2.1993 -5.9075 -0.3403 15 6 1.4313 -4.7456 -0.2369 16 6 -0.0418 -4.8254 -0.2570 17 8 -0.6757 -4.1627 -1.0553 18 7 -0.6848 -5.6327 0.6097 19 6 0.0555 -6.3478 1.6592 20 6 -0.5673 -5.9911 3.0190 21 7 -2.0272 -6.1878 2.9330 22 6 -2.6149 -6.9952 3.8294 23 8 -1.9222 -7.5726 4.6438 24 8 -3.9450 -7.1853 3.8558 25 6 -4.7449 -6.1098 3.2859 26 6 -4.2359 -5.8681 1.8730 27 6 -2.7620 -5.4886 1.8831 28 1 -2.6782 -4.4151 2.0529 29 6 -2.1395 -5.8212 0.5212 30 1 -0.4850 0.8400 0.0004 31 1 3.9515 -2.4845 -0.0041 32 1 5.2803 -4.5424 -0.1876 33 1 4.1676 -6.7257 -0.4018 34 1 1.7156 -6.8686 -0.4349 35 1 -0.0171 -7.4222 1.4907 36 1 1.1015 -6.0419 1.6422 37 1 -0.3519 -4.9504 3.2611 38 1 -0.1552 -6.6417 3.7904 39 1 -5.7934 -6.4061 3.2561 40 1 -4.6338 -5.2087 3.8892 41 1 -4.8141 -5.0556 1.4329 42 1 -4.3720 -6.7685 1.2740 43 1 -2.5485 -5.1567 -0.2399 44 1 -2.3589 -6.8569 0.2619 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000494033691.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:45:37 Heat of formation + Delta-G solvation = -113.148756 kcal Electronic energy + Delta-G solvation = -31324.388865 eV Core-core repulsion = 27014.395309 eV Total energy + Delta-G solvation = -4309.993556 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.141 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.45623 -41.38754 -40.11399 -38.50232 -38.36078 -38.05893 -35.46723 -34.33982 -33.96481 -32.24049 -30.85589 -30.63110 -28.82099 -27.40044 -26.00039 -25.00876 -23.97967 -23.38465 -23.07335 -20.85438 -20.69084 -19.90249 -19.37473 -18.68992 -18.21610 -17.72596 -17.38531 -17.22207 -16.63526 -16.46678 -16.28679 -15.88778 -15.77245 -15.60064 -15.48203 -15.36441 -15.20013 -14.66453 -14.55871 -14.39778 -14.07443 -13.62893 -13.55780 -13.32334 -13.04842 -12.94329 -12.74156 -12.69778 -12.52513 -12.45294 -12.35490 -12.32377 -12.16039 -11.70691 -11.47047 -11.40709 -10.83760 -10.79074 -10.51389 -9.81326 -9.53056 -9.06044 -8.48012 -6.17615 0.23566 0.69724 1.23788 1.33131 1.44579 1.47172 1.49569 1.69789 2.03363 2.15013 2.39718 2.80996 3.12283 3.34867 3.39521 3.42965 3.58126 3.78311 3.86375 3.94019 4.07264 4.10818 4.13215 4.19916 4.26668 4.35058 4.49629 4.55575 4.57610 4.59270 4.62201 4.67546 4.79822 4.91254 4.94165 5.03264 5.07788 5.13017 5.29477 5.43476 5.51908 5.59423 5.70474 5.94697 6.14826 6.27078 6.51895 6.83203 6.94241 7.18232 7.74142 8.73416 Molecular weight = 346.14amu Principal moments of inertia in cm(-1) A = 0.011398 B = 0.003671 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.969267 B = 7626.045281 C = 8971.533202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.019 4.019 3 Si 1.018 2.982 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.253 1.253 7 C -0.420 4.420 8 H 0.107 0.893 9 O -0.211 6.211 10 C 0.148 3.852 11 C -0.249 4.249 12 C -0.046 4.046 13 C -0.190 4.190 14 C -0.037 4.037 15 C -0.230 4.230 16 C 0.575 3.425 17 O -0.574 6.574 18 N -0.612 5.612 19 C 0.100 3.900 20 C 0.105 3.895 21 N -0.607 5.607 22 C 0.657 3.343 23 O -0.573 6.573 24 O -0.355 6.355 25 C 0.061 3.939 26 C -0.159 4.159 27 C 0.126 3.874 28 H 0.067 0.933 29 C 0.107 3.893 30 H 0.271 0.729 31 H 0.124 0.876 32 H 0.153 0.847 33 H 0.162 0.838 34 H 0.151 0.849 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.063 0.937 38 H 0.118 0.882 39 H 0.156 0.844 40 H 0.080 0.920 41 H 0.128 0.872 42 H 0.106 0.894 43 H 0.091 0.909 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.022 -13.744 3.679 14.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.218 4.218 3 Si 0.837 3.163 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.177 1.177 7 C -0.496 4.496 8 H 0.124 0.876 9 O -0.116 6.116 10 C 0.095 3.905 11 C -0.268 4.268 12 C -0.064 4.064 13 C -0.209 4.209 14 C -0.055 4.055 15 C -0.234 4.234 16 C 0.365 3.635 17 O -0.452 6.452 18 N -0.346 5.346 19 C -0.023 4.023 20 C -0.018 4.018 21 N -0.353 5.353 22 C 0.412 3.588 23 O -0.461 6.461 24 O -0.267 6.267 25 C -0.012 4.012 26 C -0.197 4.197 27 C 0.022 3.978 28 H 0.085 0.915 29 C -0.016 4.016 30 H 0.080 0.920 31 H 0.142 0.858 32 H 0.171 0.829 33 H 0.180 0.820 34 H 0.169 0.831 35 H 0.119 0.881 36 H 0.125 0.875 37 H 0.081 0.919 38 H 0.136 0.864 39 H 0.174 0.826 40 H 0.099 0.901 41 H 0.146 0.854 42 H 0.124 0.876 43 H 0.109 0.891 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.670 -13.671 3.774 14.649 hybrid contribution 0.166 1.534 -0.200 1.556 sum -3.503 -12.136 3.574 13.128 Atomic orbital electron populations 1.70224 1.08195 1.28747 1.47674 1.26628 0.96740 1.02844 0.95576 0.84668 0.77421 0.74181 0.80063 1.18181 1.19855 1.17737 1.21871 0.92630 0.81352 1.53721 0.87627 1.83967 1.35833 1.12472 1.79284 1.19846 0.91582 0.86947 0.92153 1.21295 0.92313 1.00896 1.12295 1.21400 1.00728 0.91199 0.93027 1.21146 0.93680 0.98481 1.07555 1.21162 0.94340 0.95329 0.94653 1.19040 0.92140 0.92858 1.19401 1.18509 0.87976 0.77224 0.79757 1.90754 1.69127 1.43880 1.41488 1.47989 1.08098 1.46545 1.31924 1.22421 0.97416 0.97777 0.84690 1.22276 0.77969 1.02501 0.99026 1.47561 1.09461 1.47423 1.30826 1.18010 0.81893 0.78635 0.80239 1.90924 1.60544 1.52756 1.41865 1.86873 1.15410 1.46159 1.78264 1.23630 0.96602 0.88659 0.92354 1.22131 0.91970 1.06726 0.98890 1.21361 0.93166 0.96550 0.86750 0.91526 1.22094 0.79633 1.03256 0.96665 0.91967 0.85829 0.82931 0.82016 0.83120 0.88099 0.87479 0.91864 0.86407 0.82591 0.90149 0.85382 0.87583 0.89081 0.88393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.82 13.67 21.62 0.30 -56.53 16 2 C -0.02 -1.09 5.49 84.85 0.47 -0.63 16 3 Si 1.02 42.66 29.55 68.60 2.03 44.69 16 4 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 5 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 6 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 7 C -0.42 -24.30 9.49 67.93 0.64 -23.66 16 8 H 0.11 5.49 5.20 -2.91 -0.02 5.48 16 9 O -0.21 -12.70 8.96 -17.26 -0.15 -12.85 16 10 C 0.15 7.18 6.65 22.91 0.15 7.34 16 11 C -0.25 -10.06 9.16 22.36 0.20 -9.86 16 12 C -0.05 -1.34 10.03 22.30 0.22 -1.11 16 13 C -0.19 -4.84 10.03 22.25 0.22 -4.62 16 14 C -0.04 -1.07 7.73 22.52 0.17 -0.90 16 15 C -0.23 -9.42 4.64 -19.99 -0.09 -9.52 16 16 C 0.57 24.61 6.82 86.70 0.59 25.20 16 17 O -0.57 -30.63 16.19 -1.21 -0.02 -30.65 16 18 N -0.61 -19.44 2.94 -820.95 -2.42 -21.85 16 19 C 0.10 2.49 5.80 86.54 0.50 2.99 16 20 C 0.10 2.75 6.52 86.43 0.56 3.32 16 21 N -0.61 -15.47 2.94 -927.43 -2.72 -18.20 16 22 C 0.66 18.46 8.29 129.88 1.08 19.53 16 23 O -0.57 -19.95 16.25 19.90 0.32 -19.63 16 24 O -0.36 -8.29 10.55 -52.94 -0.56 -8.85 16 25 C 0.06 0.81 7.16 71.69 0.51 1.33 16 26 C -0.16 -2.18 5.54 30.04 0.17 -2.02 16 27 C 0.13 2.89 3.22 44.96 0.14 3.04 16 28 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 29 C 0.11 2.77 5.83 86.42 0.50 3.27 16 30 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 31 H 0.12 5.09 5.64 -2.91 -0.02 5.07 16 32 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 33 H 0.16 2.70 8.06 -2.91 -0.02 2.68 16 34 H 0.15 3.37 7.75 -2.91 -0.02 3.34 16 35 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.11 2.75 5.29 -2.39 -0.01 2.74 16 37 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 38 H 0.12 2.97 6.73 -2.39 -0.02 2.95 16 39 H 0.16 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 41 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.11 1.18 7.75 -2.39 -0.02 1.16 16 43 H 0.09 2.75 7.00 -2.39 -0.02 2.73 16 44 H 0.10 1.99 7.93 -2.39 -0.02 1.97 16 Total: -1.00 -87.96 361.37 3.88 -84.08 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: 1.05 Total: 26.09 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: 6.06 Total: 13.71 kcal Atomic # 7 Polarization: -91.74 SS G_CDS: -4.85 Total: -96.58 kcal Atomic # 8 Polarization: -71.57 SS G_CDS: -0.41 Total: -71.98 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -87.96 3.88 -84.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494033691.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.072 kcal (2) G-P(sol) polarization free energy of solvation -87.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds