Wall clock time and date at job start Sat Apr 11 2020 07:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99933 * 2 1 4 4 H 1.48496 * 109.47136 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46951 * 299.99880 * 3 2 1 6 6 H 1.48498 * 109.47372 * 59.99745 * 3 2 1 7 7 C 1.37880 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99697 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99702 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46886 * 179.97438 * 9 7 2 11 11 C 1.46504 * 120.00383 * 89.99957 * 10 9 7 12 12 C 1.50707 * 109.46935 * 270.00600 * 11 10 9 13 13 C 1.38227 * 119.62059 * 95.01845 * 12 11 10 14 14 C 1.38627 * 119.15702 * 179.74122 * 13 12 11 15 15 C 1.38669 * 118.42389 * 0.47826 * 14 13 12 16 16 C 1.38186 * 119.16143 * 359.49762 * 15 14 13 17 17 N 1.31856 * 119.61137 * 274.99275 * 12 11 10 18 18 C 1.34777 * 119.99928 * 270.00390 * 10 9 7 19 19 O 1.21287 * 120.00124 * 180.02562 * 18 10 9 20 20 C 1.50698 * 120.00377 * 359.97438 * 18 10 9 21 21 C 1.52999 * 109.47332 * 180.02562 * 20 18 10 22 22 O 1.42896 * 109.46762 * 180.02562 * 21 20 18 23 23 C 1.42907 * 113.99633 * 180.02562 * 22 21 20 24 24 C 1.53006 * 109.46776 * 179.97438 * 23 22 21 25 25 F 1.39902 * 109.46920 * 59.99933 * 24 23 22 26 26 F 1.39907 * 109.46851 * 179.97438 * 24 23 22 27 27 F 1.39900 * 109.47106 * 299.99504 * 24 23 22 28 28 H 0.97000 * 120.00213 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47036 * 59.99986 * 9 7 2 30 30 H 1.08997 * 109.47234 * 299.99688 * 9 7 2 31 31 H 1.08997 * 109.47679 * 150.00067 * 11 10 9 32 32 H 1.09003 * 109.46652 * 30.00027 * 11 10 9 33 33 H 1.07998 * 120.41916 * 359.95342 * 13 12 11 34 34 H 1.08008 * 120.78688 * 180.22921 * 14 13 12 35 35 H 1.08002 * 120.42244 * 179.78279 * 15 14 13 36 36 H 1.07996 * 119.61757 * 180.25243 * 16 15 14 37 37 H 1.08996 * 109.47123 * 300.00770 * 20 18 10 38 38 H 1.09001 * 109.46493 * 60.00386 * 20 18 10 39 39 H 1.09000 * 109.46745 * 300.00087 * 21 20 18 40 40 H 1.09001 * 109.47245 * 60.00567 * 21 20 18 41 41 H 1.08995 * 109.47058 * 299.99769 * 23 22 21 42 42 H 1.08997 * 109.47254 * 60.00204 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 2.6791 -4.1695 1.2692 12 6 3.9222 -3.4369 1.7043 13 6 3.8176 -2.3775 2.5859 14 6 4.9679 -1.7139 2.9839 15 6 6.1847 -2.1363 2.4703 16 6 6.2113 -3.2037 1.5931 17 7 5.0971 -3.8145 1.2399 18 6 2.6409 -4.1248 -1.1667 19 8 3.4287 -5.0470 -1.1667 20 6 2.1510 -3.5524 -2.4718 21 6 2.7967 -4.3084 -3.6347 22 8 2.3325 -3.7652 -4.8722 23 6 2.8776 -4.4043 -6.0283 24 6 2.3137 -3.7454 -7.2888 25 9 2.6576 -2.3893 -7.2997 26 9 2.8478 -4.3707 -8.4207 27 9 0.9206 -3.8734 -7.2985 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5570 -0.8897 30 1 0.6241 -2.5567 0.8903 31 1 2.9074 -5.2272 1.1389 32 1 1.9057 -4.0556 2.0289 33 1 2.8524 -2.0728 2.9626 34 1 4.9170 -0.8851 3.6745 35 1 7.1006 -1.6402 2.7557 36 1 7.1554 -3.5413 1.1918 37 1 1.0674 -3.6548 -2.5294 38 1 2.4199 -2.4977 -2.5296 39 1 3.8804 -4.2064 -3.5772 40 1 2.5274 -5.3631 -3.5767 41 1 3.9630 -4.3050 -6.0205 42 1 2.6093 -5.4607 -6.0200 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517770056.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:45:45 Heat of formation + Delta-G solvation = -217.643268 kcal Electronic energy + Delta-G solvation = -30483.353414 eV Core-core repulsion = 25626.971895 eV Total energy + Delta-G solvation = -4856.381519 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.12315 -48.67015 -48.61201 -41.30301 -40.42414 -39.10475 -36.81408 -34.68189 -33.51753 -33.16855 -32.35839 -30.29000 -29.38194 -27.60620 -25.11311 -24.46031 -24.26339 -24.17186 -22.77468 -20.00576 -19.66474 -19.65311 -18.77096 -18.60345 -18.19901 -17.71288 -17.29261 -17.18431 -16.97684 -16.67727 -16.46421 -15.99770 -15.79001 -15.49276 -15.41376 -15.05757 -14.96405 -14.79407 -14.76977 -14.66948 -14.45175 -14.29975 -14.00781 -13.94502 -13.70429 -13.45078 -13.09701 -12.80776 -12.76075 -12.62677 -12.50414 -12.42414 -12.32496 -11.98852 -11.67802 -10.90525 -10.81685 -10.67444 -10.54784 -10.30409 -9.83785 -9.44296 -8.17621 -6.28194 0.24565 0.49427 1.36533 1.41111 1.42509 1.49998 1.76862 2.10088 2.39006 2.53088 2.83657 2.99196 3.09081 3.14548 3.43468 3.49358 3.80266 3.92164 4.02645 4.06328 4.09396 4.12984 4.14767 4.29653 4.34520 4.45200 4.56535 4.64096 4.78053 4.84562 4.89455 4.94699 4.97787 5.25540 5.30997 5.37123 5.68745 5.80289 5.83326 5.90144 6.10068 6.56489 6.84348 7.21373 7.31376 7.44972 8.88353 Molecular weight = 346.13amu Principal moments of inertia in cm(-1) A = 0.010002 B = 0.003213 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2798.726880 B = 8713.804329 C =10107.410343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.029 3.971 3 Si 0.940 3.060 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.044 0.956 9 C 0.249 3.751 10 N -0.592 5.592 11 C 0.169 3.831 12 C 0.102 3.898 13 C -0.147 4.147 14 C -0.089 4.089 15 C -0.171 4.171 16 C 0.073 3.927 17 N -0.496 5.496 18 C 0.520 3.480 19 O -0.572 6.572 20 C -0.130 4.130 21 C 0.095 3.905 22 O -0.396 6.396 23 C 0.016 3.984 24 C 0.461 3.539 25 F -0.189 7.189 26 F -0.173 7.173 27 F -0.186 7.186 28 H 0.266 0.734 29 H 0.033 0.967 30 H 0.030 0.970 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.135 0.865 34 H 0.156 0.844 35 H 0.164 0.836 36 H 0.171 0.829 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.118 0.882 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.569 -7.042 -3.702 10.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.171 4.171 3 Si 0.767 3.233 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.561 4.561 8 H 0.062 0.938 9 C 0.129 3.871 10 N -0.322 5.322 11 C 0.045 3.955 12 C -0.037 4.037 13 C -0.168 4.168 14 C -0.115 4.115 15 C -0.190 4.190 16 C -0.084 4.084 17 N -0.206 5.206 18 C 0.309 3.691 19 O -0.453 6.453 20 C -0.170 4.170 21 C 0.019 3.981 22 O -0.315 6.315 23 C -0.062 4.062 24 C 0.407 3.593 25 F -0.170 7.170 26 F -0.154 7.154 27 F -0.168 7.168 28 H 0.075 0.925 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.103 0.897 32 H 0.123 0.877 33 H 0.153 0.847 34 H 0.173 0.827 35 H 0.182 0.818 36 H 0.188 0.812 37 H 0.121 0.879 38 H 0.109 0.891 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.136 0.864 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.677 -7.940 -4.302 11.853 hybrid contribution 0.109 1.986 0.335 2.017 sum 7.786 -5.954 -3.967 10.574 Atomic orbital electron populations 1.69985 1.06881 1.27797 1.51016 1.25437 0.95308 1.01502 0.94878 0.85770 0.78890 0.80814 0.77815 1.20092 1.21060 1.20040 1.21474 0.92608 0.91272 1.50732 0.93799 1.19213 0.87277 0.82636 0.98012 1.48110 1.44658 1.34825 1.04636 1.20235 0.91993 0.97073 0.86186 1.21613 0.93587 0.94971 0.93487 1.22095 1.00436 0.95819 0.98412 1.21917 0.92213 0.98829 0.98540 1.22439 0.99795 0.98205 0.98585 1.23168 0.96774 0.93360 0.95116 1.67519 0.99075 1.30943 1.23022 1.20416 0.80431 0.82238 0.85993 1.90628 1.35824 1.30792 1.88060 1.21357 1.03058 1.01884 0.90701 1.22131 0.98213 0.97161 0.80568 1.87832 1.69677 1.60188 1.13846 1.23722 1.01248 0.98912 0.82283 1.20415 0.75981 0.76825 0.86077 1.93201 1.91883 1.35091 1.96843 1.93207 1.86045 1.82245 1.53930 1.93197 1.31130 1.95595 1.96836 0.92496 0.94926 0.95177 0.89724 0.87734 0.84707 0.82678 0.81819 0.81192 0.87917 0.89054 0.91993 0.90686 0.86428 0.85860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.84 13.29 21.45 0.28 -48.55 16 2 C 0.03 1.48 5.46 84.66 0.46 1.94 16 3 Si 0.94 41.27 29.54 68.60 2.03 43.30 16 4 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.52 -25.75 9.13 25.60 0.23 -25.51 16 8 H 0.04 2.29 7.81 -2.91 -0.02 2.27 16 9 C 0.25 11.18 5.01 85.63 0.43 11.61 16 10 N -0.59 -23.87 2.44 -830.49 -2.03 -25.89 16 11 C 0.17 6.11 5.76 85.63 0.49 6.60 16 12 C 0.10 3.74 6.36 42.55 0.27 4.01 16 13 C -0.15 -4.91 9.57 22.36 0.21 -4.70 16 14 C -0.09 -2.50 10.18 22.47 0.23 -2.27 16 15 C -0.17 -4.38 10.11 22.36 0.23 -4.15 16 16 C 0.07 2.19 11.18 84.67 0.95 3.14 16 17 N -0.50 -18.53 10.27 -183.88 -1.89 -20.42 16 18 C 0.52 20.78 7.67 87.66 0.67 21.46 16 19 O -0.57 -24.31 15.56 -3.05 -0.05 -24.36 16 20 C -0.13 -4.65 4.62 29.85 0.14 -4.52 16 21 C 0.10 2.78 5.23 71.98 0.38 3.16 16 22 O -0.40 -11.16 10.23 -148.98 -1.52 -12.69 16 23 C 0.02 0.32 5.90 71.98 0.42 0.74 16 24 C 0.46 10.29 3.32 71.98 0.24 10.52 16 25 F -0.19 -5.03 17.26 44.97 0.78 -4.25 16 26 F -0.17 -3.43 17.32 44.97 0.78 -2.65 16 27 F -0.19 -4.77 17.26 44.97 0.78 -3.99 16 28 H 0.27 13.55 8.31 -92.71 -0.77 12.78 16 29 H 0.03 1.53 6.44 -2.39 -0.02 1.52 16 30 H 0.03 1.39 7.89 -2.39 -0.02 1.38 16 31 H 0.08 3.09 7.42 -2.39 -0.02 3.07 16 32 H 0.10 3.30 7.79 -2.39 -0.02 3.28 16 33 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 34 H 0.16 3.39 8.06 -2.91 -0.02 3.37 16 35 H 0.16 2.89 8.06 -2.91 -0.02 2.86 16 36 H 0.17 4.04 8.06 -2.91 -0.02 4.02 16 37 H 0.10 3.56 7.40 -2.39 -0.02 3.54 16 38 H 0.09 3.66 8.00 -2.39 -0.02 3.64 16 39 H 0.06 1.80 8.10 -2.39 -0.02 1.78 16 40 H 0.07 1.98 8.10 -2.39 -0.02 1.96 16 41 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -63.97 379.78 5.56 -58.41 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 1.05 Total: 19.06 kcal Atomic # 6 Polarization: 16.68 SS G_CDS: 5.35 Total: 22.03 kcal Atomic # 7 Polarization: -91.24 SS G_CDS: -3.63 Total: -94.87 kcal Atomic # 8 Polarization: -35.47 SS G_CDS: -1.57 Total: -37.04 kcal Atomic # 9 Polarization: -13.23 SS G_CDS: 2.33 Total: -10.89 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -63.97 5.56 -58.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517770056.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.230 kcal (2) G-P(sol) polarization free energy of solvation -63.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds