Wall clock time and date at job start Sat Apr 11 2020 07:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99850 * 2 1 4 4 H 1.48503 * 109.47375 * 240.00614 * 3 2 1 5 5 H 1.48500 * 109.47098 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47208 * 120.00129 * 3 2 1 7 7 C 1.37873 * 120.00188 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00033 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00053 * 0.02562 * 7 2 1 10 10 C 1.53035 * 109.46075 * 180.02562 * 9 7 2 11 11 C 1.53194 * 109.31316 * 178.62540 * 10 9 7 12 12 N 1.46932 * 108.89321 * 54.56079 * 11 10 9 13 13 C 1.34780 * 120.62842 * 126.45910 * 12 11 10 14 14 O 1.21353 * 120.00147 * 351.37038 * 13 12 11 15 15 C 1.49360 * 119.99684 * 171.36537 * 13 12 11 16 16 O 1.21362 * 119.99951 * 353.38676 * 15 13 12 17 17 N 1.34780 * 119.99974 * 173.38760 * 15 13 12 18 18 C 1.39082 * 119.99786 * 183.56002 * 17 15 13 19 19 C 1.38896 * 120.17463 * 322.83927 * 18 17 15 20 20 C 1.38017 * 120.06986 * 179.97438 * 19 18 17 21 21 C 1.38579 * 120.42030 * 0.02562 * 20 19 18 22 22 C 1.37792 * 120.34639 * 0.02562 * 21 20 19 23 23 C 1.39740 * 119.92021 * 359.70007 * 22 21 20 24 24 C 1.47388 * 120.20578 * 180.32127 * 23 22 21 25 25 O 1.21510 * 119.99905 * 184.52045 * 24 23 22 26 26 O 1.34757 * 120.00189 * 4.52290 * 24 23 22 27 27 C 1.46955 * 118.71436 * 306.64176 * 12 11 10 28 28 C 1.53040 * 109.45116 * 59.93298 * 9 7 2 29 29 H 0.97000 * 120.00336 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.45658 * 299.96893 * 9 7 2 31 31 H 1.09001 * 109.50110 * 58.67196 * 10 9 7 32 32 H 1.09001 * 109.52432 * 298.59111 * 10 9 7 33 33 H 1.09000 * 109.58662 * 174.41886 * 11 10 9 34 34 H 1.08997 * 109.58975 * 294.70002 * 11 10 9 35 35 H 0.97000 * 119.99556 * 3.55869 * 17 15 13 36 36 H 1.08000 * 119.96331 * 0.02562 * 19 18 17 37 37 H 1.07993 * 119.78718 * 179.97438 * 20 19 18 38 38 H 1.07995 * 119.82771 * 179.97438 * 21 20 19 39 39 H 1.08001 * 120.04243 * 180.02562 * 22 21 20 40 40 H 0.96702 * 117.00174 * 179.97438 * 26 24 23 41 41 H 1.08998 * 109.47207 * 293.57374 * 27 12 11 42 42 H 1.09005 * 109.71235 * 173.28512 * 27 12 11 43 43 H 1.08999 * 109.50014 * 301.33703 * 28 9 7 44 44 H 1.09001 * 109.49352 * 61.43297 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2459 -3.6621 -0.0015 11 6 1.4768 -4.9866 0.0320 12 7 0.5212 -5.0103 -1.0838 13 6 0.5100 -6.0372 -1.9567 14 8 1.3894 -6.8728 -1.9218 15 6 -0.5847 -6.1468 -2.9668 16 8 -1.5266 -5.3826 -2.9261 17 7 -0.5265 -7.0944 -3.9234 18 6 -1.5074 -7.1497 -4.9080 19 6 -2.8302 -6.8674 -4.5922 20 6 -3.8017 -6.9224 -5.5710 21 6 -3.4676 -7.2592 -6.8731 22 6 -2.1609 -7.5436 -7.2052 23 6 -1.1649 -7.4866 -6.2268 24 6 0.2360 -7.7826 -6.5766 25 8 1.0856 -7.8126 -5.7084 26 8 0.5745 -8.0200 -7.8591 27 6 -0.4191 -3.8907 -1.2319 28 6 0.3707 -2.5782 -1.2510 29 1 -0.4851 0.8400 0.0004 30 1 0.6247 -2.5575 0.8884 31 1 2.8877 -3.5918 0.8768 32 1 2.8570 -3.6190 -0.9030 33 1 2.1754 -5.8174 -0.0675 34 1 0.9386 -5.0729 0.9759 35 1 0.1994 -7.7377 -3.9253 36 1 -3.0987 -6.6037 -3.5799 37 1 -4.8289 -6.7025 -5.3203 38 1 -4.2356 -7.2998 -7.6313 39 1 -1.9060 -7.8050 -8.2216 40 1 1.5055 -8.2092 -8.0397 41 1 -1.1140 -3.8863 -0.3922 42 1 -0.9735 -3.9971 -2.1644 43 1 -0.3218 -1.7365 -1.2619 44 1 0.9987 -2.5448 -2.1413 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562955328.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:45:50 Heat of formation + Delta-G solvation = -110.374542 kcal Electronic energy + Delta-G solvation = -30412.460805 eV Core-core repulsion = 26102.587548 eV Total energy + Delta-G solvation = -4309.873257 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.48576 -40.44188 -39.25916 -38.18368 -37.05272 -36.50338 -35.03496 -33.45289 -31.77725 -31.24483 -30.23423 -30.04954 -26.74533 -25.33803 -24.56876 -23.28830 -22.50755 -22.04060 -21.38485 -20.22446 -19.01711 -18.44502 -17.97654 -17.48971 -17.23037 -16.58413 -16.18527 -16.08498 -15.79916 -15.44177 -15.08568 -14.77899 -14.54223 -14.41177 -14.00332 -13.82343 -13.46458 -13.16768 -13.07399 -12.89027 -12.69841 -12.43051 -12.33725 -12.00183 -11.89318 -11.65471 -11.35749 -11.07151 -10.98408 -10.90362 -10.66629 -10.50519 -10.37227 -10.08796 -9.73324 -9.45018 -9.25367 -9.18502 -8.73107 -8.54344 -8.35217 -8.10617 -6.00878 -4.07360 0.26167 0.87523 1.57637 2.22127 2.35204 2.65518 3.23568 3.31160 3.35870 3.38722 3.48058 3.62878 4.38377 4.41571 4.42374 4.61120 4.67289 4.98949 5.00232 5.16821 5.28825 5.50554 5.62286 5.77834 5.81201 5.85042 5.89057 6.00447 6.07007 6.09542 6.14004 6.21307 6.41578 6.45564 6.59523 6.68136 6.76833 6.94789 7.04121 7.14065 7.27504 7.53320 7.64086 7.69574 7.77521 7.93570 8.04712 8.17879 8.41586 8.95557 9.57483 11.04571 Molecular weight = 346.14amu Principal moments of inertia in cm(-1) A = 0.014508 B = 0.002676 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.511169 B =10459.910998 C =10841.179053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.047 3.953 10 C -0.123 4.123 11 C 0.108 3.892 12 N -0.560 5.560 13 C 0.503 3.497 14 O -0.533 6.533 15 C 0.512 3.488 16 O -0.485 6.485 17 N -0.642 5.642 18 C 0.216 3.784 19 C -0.134 4.134 20 C -0.059 4.059 21 C -0.151 4.151 22 C -0.042 4.042 23 C -0.162 4.162 24 C 0.529 3.471 25 O -0.509 6.509 26 O -0.510 6.510 27 C 0.066 3.934 28 C -0.123 4.123 29 H 0.261 0.739 30 H 0.028 0.972 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.434 0.566 36 H 0.150 0.850 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.142 0.858 40 H 0.416 0.584 41 H 0.064 0.936 42 H 0.119 0.881 43 H 0.107 0.893 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.478 -17.438 -14.235 23.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.028 3.972 10 C -0.161 4.161 11 C -0.014 4.014 12 N -0.292 5.292 13 C 0.284 3.716 14 O -0.411 6.411 15 C 0.296 3.704 16 O -0.359 6.359 17 N -0.293 5.293 18 C 0.118 3.882 19 C -0.154 4.154 20 C -0.078 4.078 21 C -0.169 4.169 22 C -0.061 4.061 23 C -0.166 4.166 24 C 0.374 3.626 25 O -0.399 6.399 26 O -0.322 6.322 27 C -0.054 4.054 28 C -0.162 4.162 29 H 0.071 0.929 30 H 0.046 0.954 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.278 0.722 36 H 0.167 0.833 37 H 0.154 0.846 38 H 0.152 0.848 39 H 0.160 0.840 40 H 0.275 0.725 41 H 0.082 0.918 42 H 0.137 0.863 43 H 0.125 0.875 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.926 -17.090 -13.772 23.336 hybrid contribution 1.475 0.674 -0.134 1.628 sum -6.450 -16.416 -13.907 22.461 Atomic orbital electron populations 1.69831 1.05825 1.26585 1.50687 1.24961 0.94876 0.99043 0.95078 0.86671 0.79617 0.83199 0.78580 1.20360 1.21299 1.20327 1.21154 0.92882 0.90578 1.50563 0.92763 1.18670 0.92653 0.91652 0.94204 1.22016 0.98952 0.93871 1.01253 1.21909 0.91692 1.00393 0.87382 1.48210 1.35325 1.19588 1.26085 1.19539 0.85776 0.83524 0.82738 1.90739 1.37009 1.41868 1.71495 1.20718 0.87557 0.80199 0.81930 1.90573 1.33874 1.39558 1.71941 1.43545 1.27985 1.32720 1.25079 1.17698 0.88859 0.95458 0.86138 1.21331 0.90026 1.02074 1.01965 1.21377 0.99740 0.94184 0.92486 1.21164 0.96359 1.02380 0.97026 1.21289 0.91896 0.94322 0.98571 1.18861 0.90807 1.13919 0.92967 1.20723 0.88895 0.72790 0.80185 1.90844 1.51505 1.48410 1.49132 1.84531 1.36143 1.82633 1.28937 1.23082 0.91544 0.85985 1.04784 1.22039 1.00032 0.94872 0.99223 0.92898 0.95358 0.91780 0.92793 0.90011 0.91337 0.72163 0.83254 0.84633 0.84846 0.84019 0.72457 0.91775 0.86347 0.87539 0.94506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.84 11.31 55.43 0.63 -24.21 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 3 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.51 -13.89 8.56 -34.44 -0.29 -14.18 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.05 1.13 2.06 -91.73 -0.19 0.94 16 10 C -0.12 -2.54 5.30 -26.61 -0.14 -2.68 16 11 C 0.11 1.97 6.44 -3.71 -0.02 1.95 16 12 N -0.56 -10.60 2.98 -173.28 -0.52 -11.12 16 13 C 0.50 9.22 7.73 -11.63 -0.09 9.13 16 14 O -0.53 -10.46 15.92 5.49 0.09 -10.37 16 15 C 0.51 8.38 7.56 -11.63 -0.09 8.30 16 16 O -0.49 -8.20 10.77 5.49 0.06 -8.14 16 17 N -0.64 -9.22 4.59 -10.11 -0.05 -9.26 16 18 C 0.22 2.69 6.26 -83.53 -0.52 2.16 16 19 C -0.13 -1.48 8.66 -39.42 -0.34 -1.82 16 20 C -0.06 -0.48 10.03 -39.54 -0.40 -0.88 16 21 C -0.15 -1.06 10.02 -39.62 -0.40 -1.46 16 22 C -0.04 -0.34 9.61 -39.18 -0.38 -0.72 16 23 C -0.16 -1.75 5.89 -104.81 -0.62 -2.37 16 24 C 0.53 5.83 8.25 34.45 0.28 6.12 16 25 O -0.51 -7.13 14.72 -19.27 -0.28 -7.42 16 26 O -0.51 -3.80 12.69 -40.65 -0.52 -4.32 16 27 C 0.07 1.31 5.97 -3.69 -0.02 1.29 16 28 C -0.12 -2.87 5.16 -26.61 -0.14 -3.00 16 29 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.08 1.44 7.01 -51.93 -0.36 1.08 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.43 6.36 5.94 -40.82 -0.24 6.12 16 36 H 0.15 1.76 6.41 -52.49 -0.34 1.43 16 37 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 38 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 39 H 0.14 0.85 7.62 -52.49 -0.40 0.45 16 40 H 0.42 1.39 9.11 45.56 0.42 1.80 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.12 2.30 4.34 -54.70 -0.24 2.06 16 43 H 0.11 2.75 6.03 -51.93 -0.31 2.43 16 44 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 364.12 15.07 5.49 5.49 Total: -1.00 -32.08 364.12 -7.97 -40.05 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -4.40 Total: 8.81 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: -3.45 Total: 4.37 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 0.06 Total: -44.59 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: -0.65 Total: -30.25 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.08 -7.97 -40.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562955328.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.324 kcal (2) G-P(sol) polarization free energy of solvation -32.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds