Wall clock time and date at job start Sat Apr 11 2020 07:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38140 * 119.97797 * 2 1 4 4 C 1.38826 * 119.95535 * 180.27552 * 3 2 1 5 5 N 1.40037 * 120.04455 * 179.97438 * 4 3 2 6 6 C 1.46765 * 124.34512 * 354.51754 * 5 4 3 7 7 C 1.54659 * 105.37569 * 162.85174 * 6 5 4 8 8 H 1.09006 * 111.22616 * 267.57492 * 7 6 5 9 9 C 1.50701 * 110.81827 * 143.77559 * 7 6 5 10 10 O 1.21291 * 120.00042 * 6.35017 * 9 7 6 11 11 N 1.34779 * 119.99862 * 186.34549 * 9 7 6 12 12 C 1.37100 * 119.99827 * 180.02562 * 11 9 7 13 13 H 1.07997 * 120.00177 * 230.08197 * 12 11 9 14 14 C 1.38948 * 119.99856 * 50.08596 * 12 11 9 15 15 N 1.31415 * 120.00448 * 356.32912 * 14 12 11 16 16 Si 1.86803 * 119.99958 * 176.32546 * 14 12 11 17 17 H 1.48500 * 109.46754 * 90.00167 * 16 14 12 18 18 H 1.48497 * 109.47255 * 210.00034 * 16 14 12 19 19 H 1.48494 * 109.47096 * 330.00287 * 16 14 12 20 20 C 1.46504 * 120.00324 * 0.02562 * 11 9 7 21 21 C 1.52995 * 117.49793 * 192.87566 * 20 11 9 22 22 C 1.52997 * 117.49906 * 124.21518 * 20 11 9 23 23 C 1.54632 * 101.68705 * 25.76750 * 7 6 5 24 24 C 1.34417 * 124.34885 * 174.81483 * 5 4 3 25 25 O 1.21291 * 124.94405 * 0.39061 * 24 5 4 26 26 C 1.38876 * 119.91104 * 0.02562 * 4 3 2 27 27 C 1.38089 * 119.95575 * 359.97438 * 26 4 3 28 28 C 1.38457 * 119.97695 * 180.27781 * 2 1 3 29 29 F 1.35095 * 119.95682 * 359.74188 * 28 2 1 30 30 H 1.09001 * 109.47176 * 269.72324 * 1 2 3 31 31 H 1.09000 * 109.47400 * 29.72948 * 1 2 3 32 32 H 1.09007 * 109.47005 * 149.72596 * 1 2 3 33 33 H 1.08004 * 120.01900 * 0.24650 * 3 2 1 34 34 H 1.08993 * 110.24638 * 281.97746 * 6 5 4 35 35 H 1.09001 * 110.24573 * 43.98554 * 6 5 4 36 36 H 0.96994 * 120.00434 * 185.00417 * 15 14 12 37 37 H 1.09004 * 115.54655 * 338.54736 * 20 11 9 38 38 H 1.08989 * 117.50385 * 0.02562 * 21 20 11 39 39 H 1.09005 * 117.49389 * 145.02517 * 21 20 11 40 40 H 1.09000 * 117.49847 * 214.98250 * 22 20 11 41 41 H 1.09004 * 117.49993 * 359.97438 * 22 20 11 42 42 H 1.09002 * 110.48470 * 216.30803 * 23 7 6 43 43 H 1.09000 * 110.59744 * 93.71942 * 23 7 6 44 44 H 1.08000 * 120.02092 * 180.02562 * 26 4 3 45 45 H 1.07994 * 119.97858 * 180.02562 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1966 0.0000 4 6 3.5854 1.1961 -0.0058 5 7 4.2871 2.4080 -0.0063 6 6 3.6575 3.7291 -0.1169 7 6 4.7294 4.7356 0.3627 8 1 4.6300 4.9398 1.4289 9 6 4.6618 6.0114 -0.4365 10 8 3.7673 6.1781 -1.2384 11 7 5.5955 6.9674 -0.2600 12 6 5.5337 8.1283 -0.9867 13 1 6.4082 8.4844 -1.5108 14 6 4.3460 8.8467 -1.0487 15 7 3.2630 8.3771 -0.4712 16 14 4.2886 10.4802 -1.9531 17 1 3.9318 10.2462 -3.3755 18 1 3.2689 11.3582 -1.3250 19 1 5.6194 11.1347 -1.8777 20 6 6.6763 6.7659 0.7083 21 6 7.5221 7.9835 1.0863 22 6 8.1136 6.8862 0.1979 23 6 6.0371 3.9655 0.0662 24 6 5.6239 2.5104 0.0886 25 8 6.3879 1.5727 0.1794 26 6 4.2775 -0.0080 -0.0121 27 6 3.5838 -1.2020 -0.0121 28 6 2.1988 -1.1993 -0.0058 29 9 1.5219 -2.3685 -0.0062 30 1 -0.3633 -0.0050 1.0277 31 1 -0.3634 0.8924 -0.5096 32 1 -0.3633 -0.8876 -0.5181 33 1 1.6571 2.1319 0.0040 34 1 3.3833 3.9308 -1.1523 35 1 2.7778 3.7826 0.5244 36 1 2.4176 8.8411 -0.5755 37 1 6.4786 6.0290 1.4868 38 1 7.2742 8.9345 0.6149 39 1 7.8814 8.0474 2.1134 40 1 8.8616 6.2288 0.6408 41 1 8.2550 7.1148 -0.8585 42 1 6.7798 4.1631 0.8392 43 1 6.4275 4.2362 -0.9148 44 1 5.3575 -0.0105 -0.0162 45 1 4.1215 -2.1385 -0.0166 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541871898.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:46:32 Heat of formation + Delta-G solvation = -51.138481 kcal Electronic energy + Delta-G solvation = -30507.038731 eV Core-core repulsion = 26212.106932 eV Total energy + Delta-G solvation = -4294.931800 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.87059 -42.36264 -40.42807 -39.57875 -37.99285 -37.26277 -34.87712 -34.38649 -33.45986 -32.58236 -30.23403 -28.84284 -27.98811 -27.11925 -24.77246 -23.58931 -23.21793 -22.97680 -22.46557 -20.90310 -20.45723 -18.79045 -18.63468 -18.41996 -17.87717 -17.62229 -16.89268 -16.68496 -16.51627 -16.24126 -15.95669 -15.55786 -15.41197 -15.21229 -14.90833 -14.66982 -14.59609 -14.43926 -14.17213 -14.12561 -13.99422 -13.66994 -13.64252 -13.09133 -13.01285 -12.92801 -12.79292 -12.60411 -12.42551 -12.27995 -12.15678 -12.13285 -11.99178 -11.58212 -11.13048 -11.08042 -10.87460 -10.68539 -9.97316 -9.90044 -8.93580 -8.86357 -8.02184 -6.02029 -0.04035 0.13545 1.36646 1.42999 1.44732 1.52713 1.61009 2.29257 2.42418 2.54792 2.92846 3.17135 3.18369 3.26190 3.36419 3.45171 3.70828 3.74480 3.84657 3.91956 4.05008 4.17575 4.18918 4.32198 4.38345 4.39629 4.48457 4.51415 4.55682 4.68600 4.72990 4.73835 4.81727 4.96950 4.98881 5.02037 5.10688 5.13257 5.16703 5.23782 5.36343 5.43402 5.55825 5.58031 5.88067 5.90047 6.27951 6.84202 7.11745 7.22542 7.74474 8.41876 8.94232 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.016258 B = 0.002899 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.839851 B = 9655.674644 C =11075.097073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.089 4.089 3 C -0.135 4.135 4 C 0.151 3.849 5 N -0.555 5.555 6 C 0.122 3.878 7 C -0.105 4.105 8 H 0.123 0.877 9 C 0.483 3.517 10 O -0.559 6.559 11 N -0.443 5.443 12 C -0.342 4.342 13 H 0.073 0.927 14 C 0.009 3.991 15 N -0.859 5.859 16 Si 0.966 3.034 17 H -0.288 1.288 18 H -0.285 1.285 19 H -0.258 1.258 20 C 0.051 3.949 21 C -0.179 4.179 22 C -0.183 4.183 23 C -0.126 4.126 24 C 0.521 3.479 25 O -0.537 6.537 26 C -0.150 4.150 27 C -0.116 4.116 28 C 0.054 3.946 29 F -0.142 7.142 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.149 0.851 34 H 0.080 0.920 35 H 0.103 0.897 36 H 0.256 0.744 37 H 0.135 0.865 38 H 0.078 0.922 39 H 0.115 0.885 40 H 0.123 0.877 41 H 0.073 0.927 42 H 0.138 0.862 43 H 0.106 0.894 44 H 0.153 0.847 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.900 -12.980 5.451 14.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.090 4.090 3 C -0.155 4.155 4 C 0.057 3.943 5 N -0.277 5.277 6 C 0.000 4.000 7 C -0.127 4.127 8 H 0.141 0.859 9 C 0.271 3.729 10 O -0.438 6.438 11 N -0.164 5.164 12 C -0.471 4.471 13 H 0.091 0.909 14 C -0.197 4.197 15 N -0.494 5.494 16 Si 0.791 3.209 17 H -0.214 1.214 18 H -0.211 1.211 19 H -0.182 1.182 20 C -0.054 4.054 21 C -0.217 4.217 22 C -0.221 4.221 23 C -0.166 4.166 24 C 0.312 3.688 25 O -0.415 6.415 26 C -0.170 4.170 27 C -0.135 4.135 28 C 0.034 3.966 29 F -0.121 7.121 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.166 0.834 34 H 0.098 0.902 35 H 0.121 0.879 36 H 0.066 0.934 37 H 0.153 0.847 38 H 0.096 0.904 39 H 0.133 0.867 40 H 0.141 0.859 41 H 0.091 0.909 42 H 0.156 0.844 43 H 0.124 0.876 44 H 0.170 0.830 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.628 -13.317 5.171 14.299 hybrid contribution -0.433 0.950 -0.694 1.253 sum 0.194 -12.367 4.477 13.154 Atomic orbital electron populations 1.20816 0.88071 1.04205 1.03935 1.19966 0.98299 0.90705 1.00052 1.20753 0.91219 0.99005 1.04521 1.18057 0.91820 0.84723 0.99679 1.45988 1.07624 1.06009 1.68072 1.22097 0.96397 0.77881 1.03647 1.22108 0.95132 0.93124 1.02320 0.85891 1.20072 0.84006 0.84042 0.84814 1.90536 1.35375 1.79014 1.38901 1.42875 1.24231 1.14362 1.34933 1.19019 0.98281 0.99978 1.29790 0.90903 1.26151 0.95850 1.00394 0.97307 1.70047 0.99162 1.38879 1.41321 0.85358 0.78357 0.79355 0.77791 1.21417 1.21068 1.18199 1.22115 0.85882 1.01931 0.95468 1.23146 1.03525 0.94270 1.00760 1.23310 0.96541 1.02847 0.99419 1.22387 0.98271 0.89110 1.06784 1.21361 0.81223 0.92326 0.73914 1.90577 1.56247 1.44388 1.50272 1.21453 1.02377 0.90042 1.03113 1.21175 0.92044 0.99625 1.00683 1.17610 0.90177 0.81147 1.07686 1.91450 1.80270 1.46031 1.94342 0.89393 0.89703 0.90678 0.83371 0.90205 0.87903 0.93441 0.84726 0.90377 0.86719 0.85929 0.90852 0.84444 0.87566 0.82970 0.82521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.88 9.83 71.23 0.70 -1.18 16 2 C -0.09 -1.96 5.88 -19.84 -0.12 -2.08 16 3 C -0.13 -3.22 9.07 22.39 0.20 -3.02 16 4 C 0.15 4.16 6.60 38.12 0.25 4.41 16 5 N -0.55 -15.88 3.14 -627.30 -1.97 -17.85 16 6 C 0.12 3.63 5.81 86.89 0.50 4.13 16 7 C -0.10 -3.28 2.60 -10.42 -0.03 -3.30 16 8 H 0.12 3.37 7.74 -2.38 -0.02 3.35 16 9 C 0.48 21.35 6.23 87.66 0.55 21.90 16 10 O -0.56 -30.13 13.04 -3.06 -0.04 -30.17 16 11 N -0.44 -19.59 2.88 -613.13 -1.76 -21.35 16 12 C -0.34 -17.34 7.46 84.04 0.63 -16.71 16 13 H 0.07 3.65 7.79 -2.91 -0.02 3.62 16 14 C 0.01 0.49 5.02 84.93 0.43 0.92 16 15 N -0.86 -48.43 10.81 21.66 0.23 -48.20 16 16 Si 0.97 42.49 29.56 68.60 2.03 44.52 16 17 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 18 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 19 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 20 C 0.05 1.67 4.94 44.99 0.22 1.89 16 21 C -0.18 -5.48 9.86 30.62 0.30 -5.18 16 22 C -0.18 -5.09 10.20 30.62 0.31 -4.78 16 23 C -0.13 -3.39 5.15 30.59 0.16 -3.23 16 24 C 0.52 15.44 7.92 87.90 0.70 16.14 16 25 O -0.54 -17.83 14.81 -3.06 -0.05 -17.88 16 26 C -0.15 -4.02 9.29 22.39 0.21 -3.81 16 27 C -0.12 -2.68 10.02 22.30 0.22 -2.46 16 28 C 0.05 1.25 7.24 22.39 0.16 1.41 16 29 F -0.14 -3.27 16.47 44.97 0.74 -2.53 16 30 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.08 1.25 8.08 -2.39 -0.02 1.23 16 32 H 0.07 1.19 7.64 -2.38 -0.02 1.17 16 33 H 0.15 3.19 6.75 -2.91 -0.02 3.17 16 34 H 0.08 2.78 7.07 -2.39 -0.02 2.76 16 35 H 0.10 2.72 7.24 -2.39 -0.02 2.70 16 36 H 0.26 14.11 8.32 -92.71 -0.77 13.34 16 37 H 0.14 3.56 5.77 -2.38 -0.01 3.55 16 38 H 0.08 2.87 7.15 -2.39 -0.02 2.85 16 39 H 0.11 2.76 8.14 -2.38 -0.02 2.74 16 40 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.07 2.35 8.10 -2.38 -0.02 2.33 16 42 H 0.14 2.95 6.91 -2.39 -0.02 2.93 16 43 H 0.11 3.12 7.89 -2.39 -0.02 3.10 16 44 H 0.15 4.46 5.24 -2.91 -0.02 4.45 16 45 H 0.16 2.87 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -67.94 369.32 5.62 -62.32 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: 1.03 Total: 26.07 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: 5.40 Total: 5.06 kcal Atomic # 7 Polarization: -83.89 SS G_CDS: -3.50 Total: -87.39 kcal Atomic # 8 Polarization: -47.96 SS G_CDS: -0.09 Total: -48.05 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.74 Total: -2.53 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -67.94 5.62 -62.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541871898.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.182 kcal (2) G-P(sol) polarization free energy of solvation -67.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds