Wall clock time and date at job start Sat Apr 11 2020 07:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47315 * 2 1 4 4 C 1.50691 * 109.47291 * 239.99667 * 2 1 3 5 5 O 1.21283 * 120.00206 * 125.52593 * 4 2 1 6 6 N 1.34778 * 120.00221 * 305.52124 * 4 2 1 7 7 C 1.47025 * 125.64685 * 4.39376 * 6 4 2 8 8 C 1.54333 * 107.26638 * 178.84992 * 7 6 4 9 9 C 1.55156 * 103.01763 * 338.14012 * 8 7 6 10 10 O 1.42903 * 111.03772 * 277.21671 * 9 8 7 11 11 C 1.50706 * 111.00254 * 153.38424 * 9 8 7 12 12 H 1.08001 * 119.99755 * 247.80589 * 11 9 8 13 13 C 1.37875 * 120.00075 * 67.79690 * 11 9 8 14 14 N 1.31513 * 120.00086 * 0.02562 * 13 11 9 15 15 Si 1.86802 * 120.00057 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46618 * 90.00407 * 15 13 11 17 17 H 1.48494 * 109.47337 * 210.00575 * 15 13 11 18 18 H 1.48502 * 109.47321 * 330.00883 * 15 13 11 19 19 C 1.47428 * 125.65075 * 184.70397 * 6 4 2 20 20 C 1.50708 * 109.46949 * 119.99661 * 2 1 3 21 21 C 1.38340 * 119.91143 * 127.08829 * 20 2 1 22 22 C 1.38555 * 120.28275 * 179.97438 * 21 20 2 23 23 F 1.35097 * 119.95012 * 179.97438 * 22 21 20 24 24 C 1.38194 * 120.09576 * 359.97438 * 22 21 20 25 25 C 1.39584 * 119.82271 * 0.02562 * 24 22 21 26 26 C 1.43205 * 120.14063 * 180.02562 * 25 24 22 27 27 N 5.95777 * 86.98634 * 92.72028 * 2 1 3 28 28 C 1.37938 * 119.90579 * 307.06235 * 20 2 1 29 29 H 1.09005 * 109.47395 * 317.38667 * 1 2 3 30 30 H 1.09004 * 109.47003 * 77.38467 * 1 2 3 31 31 H 1.08996 * 109.47272 * 197.38616 * 1 2 3 32 32 H 1.08997 * 109.47127 * 175.05494 * 3 2 1 33 33 H 1.09002 * 109.46880 * 295.05734 * 3 2 1 34 34 H 1.09001 * 109.47063 * 55.05378 * 3 2 1 35 35 H 1.09003 * 109.87869 * 298.39310 * 7 6 4 36 36 H 1.08997 * 109.87979 * 59.55901 * 7 6 4 37 37 H 1.09000 * 110.84868 * 219.67127 * 8 7 6 38 38 H 1.09001 * 110.66553 * 96.52279 * 8 7 6 39 39 H 0.96707 * 113.99911 * 292.21593 * 10 9 8 40 40 H 0.97004 * 120.00420 * 179.97438 * 14 13 11 41 41 H 1.08994 * 110.36234 * 322.92743 * 19 6 4 42 42 H 1.08994 * 110.36802 * 85.25066 * 19 6 4 43 43 H 1.08003 * 119.85545 * 0.25462 * 21 20 2 44 44 H 1.08001 * 120.09035 * 179.97438 * 24 22 21 45 45 H 1.07990 * 120.05608 * 0.02562 * 28 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2303 5 8 2.8099 -0.1543 -1.9767 6 7 1.6177 -1.9639 -1.5013 7 6 0.6136 -2.7183 -0.7369 8 6 0.4432 -4.0866 -1.4301 9 6 0.9522 -3.8146 -2.8703 10 8 -0.0724 -3.2260 -3.6739 11 6 1.4748 -5.0771 -3.5059 12 1 2.5292 -5.1793 -3.7164 13 6 0.6070 -6.1018 -3.8186 14 7 -0.6770 -5.9773 -3.5626 15 14 1.2546 -7.6665 -4.6072 16 1 1.6263 -8.6378 -3.5471 17 1 0.2023 -8.2569 -5.4727 18 1 2.4504 -7.3487 -5.4285 19 6 2.1004 -2.8079 -2.6095 20 6 2.0323 -0.7104 1.2306 21 6 2.9440 -1.7435 1.1069 22 6 3.4113 -2.4015 2.2331 23 9 4.3012 -3.4098 2.1045 24 6 2.9685 -2.0279 3.4877 25 6 2.0486 -0.9861 3.6174 26 6 1.5855 -0.5929 4.9142 27 7 1.2168 -0.2824 5.9428 28 6 1.5821 -0.3283 2.4772 29 1 -0.3634 0.7563 0.6958 30 1 -0.3633 0.2245 -1.0029 31 1 -0.3633 -0.9807 0.3071 32 1 3.1264 1.4438 0.0886 33 1 1.7508 1.9301 -0.9310 34 1 1.6062 1.9813 0.8424 35 1 0.9574 -2.8599 0.2878 36 1 -0.3353 -2.1819 -0.7410 37 1 -0.6043 -4.3878 -1.4417 38 1 1.0555 -4.8444 -0.9413 39 1 -0.8126 -3.8188 -3.8638 40 1 -1.2877 -6.6981 -3.7829 41 1 2.2821 -2.2016 -3.4968 42 1 3.0083 -3.3354 -2.3170 43 1 3.2965 -2.0353 0.1286 44 1 3.3325 -2.5411 4.3655 45 1 0.8704 0.4784 2.5714 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592852157.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:46:57 Heat of formation + Delta-G solvation = -67.760498 kcal Electronic energy + Delta-G solvation = -31372.252484 eV Core-core repulsion = 27076.599900 eV Total energy + Delta-G solvation = -4295.652584 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.10717 -40.99357 -39.13379 -37.51139 -36.78584 -35.17348 -34.36463 -32.18983 -31.56204 -30.23565 -29.89387 -28.57603 -27.17062 -25.64915 -24.44825 -24.14737 -22.69121 -21.07350 -19.99318 -19.53307 -18.28719 -17.34032 -17.02640 -16.85875 -16.30434 -16.17297 -15.86431 -15.32183 -15.09043 -14.94454 -14.60465 -14.26118 -14.23265 -13.86294 -13.64590 -13.47123 -13.35916 -12.99944 -12.95883 -12.69556 -12.43633 -12.31551 -12.18411 -12.10843 -12.06034 -11.88224 -11.68862 -11.53284 -11.38903 -11.14731 -11.06116 -10.78378 -10.59864 -10.52956 -10.08895 -9.51131 -9.40981 -9.28035 -9.08343 -8.73428 -8.26489 -8.08048 -6.35246 -4.42902 0.28294 0.73157 2.27161 2.49584 2.83217 3.16186 3.24267 3.26655 3.31261 3.36604 3.40656 3.92449 4.21972 4.23720 4.50167 4.54910 4.64769 4.79695 4.87334 4.89811 4.96732 5.15532 5.44194 5.46803 5.51404 5.56136 5.63844 5.65102 5.68923 5.69958 5.76860 5.83606 5.92230 6.01751 6.07783 6.14539 6.26538 6.35795 6.36970 6.55837 6.79512 6.88487 7.09126 7.24001 7.25938 7.68217 7.92068 8.00404 8.46414 8.59486 9.26290 9.41709 10.72344 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.013209 B = 0.003486 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.314050 B = 8029.783993 C = 8861.330127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.039 4.039 3 C -0.124 4.124 4 C 0.531 3.469 5 O -0.545 6.545 6 N -0.602 5.602 7 C 0.090 3.910 8 C -0.140 4.140 9 C 0.251 3.749 10 O -0.584 6.584 11 C -0.536 4.536 12 H 0.065 0.935 13 C 0.073 3.927 14 N -0.897 5.897 15 Si 0.903 3.097 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.272 1.272 19 C 0.117 3.883 20 C -0.038 4.038 21 C -0.115 4.115 22 C 0.111 3.889 23 F -0.128 7.128 24 C -0.110 4.110 25 C 0.001 3.999 26 C 0.259 3.741 27 N -0.410 5.410 28 C -0.071 4.071 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.386 0.614 40 H 0.269 0.731 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.148 0.852 44 H 0.146 0.854 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.279 8.870 11.928 15.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.042 4.042 3 C -0.181 4.181 4 C 0.318 3.682 5 O -0.423 6.423 6 N -0.334 5.334 7 C -0.032 4.032 8 C -0.179 4.179 9 C 0.210 3.790 10 O -0.394 6.394 11 C -0.574 4.574 12 H 0.083 0.917 13 C -0.129 4.129 14 N -0.537 5.537 15 Si 0.730 3.270 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.197 1.197 19 C -0.004 4.004 20 C -0.039 4.039 21 C -0.135 4.135 22 C 0.091 3.909 23 F -0.106 7.106 24 C -0.131 4.131 25 C -0.003 4.003 26 C -0.057 4.057 27 N -0.085 5.085 28 C -0.091 4.091 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.238 0.762 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.166 0.834 44 H 0.164 0.836 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.399 10.094 13.145 16.746 hybrid contribution 0.156 -1.924 -0.798 2.089 sum 2.555 8.170 12.347 15.024 Atomic orbital electron populations 1.22221 0.91367 1.03767 1.03633 1.19808 0.97814 0.96550 0.90037 1.21706 1.02016 0.91699 1.02681 1.19780 0.81430 0.80496 0.86473 1.90688 1.36212 1.65265 1.50121 1.48618 1.40698 1.13260 1.30789 1.22519 0.91295 0.94821 0.94594 1.23223 1.03150 0.92565 0.98941 1.19544 0.84191 0.88703 0.86539 1.86097 1.35222 1.45008 1.73105 1.21476 0.95028 0.99512 1.41399 0.91661 1.24977 0.94817 0.98725 0.94412 1.69551 1.02401 1.34077 1.47680 0.86409 0.78803 0.82422 0.79327 1.20432 1.21015 1.19660 1.22430 0.97516 0.91955 0.88541 1.19294 0.95635 0.94954 0.93968 1.21595 0.96964 0.95519 0.99403 1.17287 0.91736 0.88492 0.93372 1.91571 1.65196 1.57206 1.96642 1.21077 0.97598 0.97298 0.97173 1.15527 0.99847 0.98424 0.86484 1.25457 0.93784 0.93846 0.92613 1.81280 1.08264 1.08016 1.10926 1.20979 0.99103 0.99289 0.89778 0.91300 0.90998 0.90291 0.91572 0.91008 0.91802 0.92724 0.91320 0.89875 0.91431 0.76213 0.92050 0.90894 0.91060 0.83446 0.83609 0.83946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 7.05 37.16 0.26 -1.29 16 2 C -0.04 -0.45 0.59 -156.81 -0.09 -0.55 16 3 C -0.12 -1.28 7.57 37.16 0.28 -1.00 16 4 C 0.53 8.70 4.95 -10.99 -0.05 8.64 16 5 O -0.54 -10.73 16.22 5.55 0.09 -10.64 16 6 N -0.60 -10.46 2.43 -170.52 -0.41 -10.88 16 7 C 0.09 1.44 4.94 -3.06 -0.02 1.43 16 8 C -0.14 -2.77 5.64 -24.89 -0.14 -2.91 16 9 C 0.25 5.67 0.89 -89.62 -0.08 5.59 16 10 O -0.58 -14.18 13.18 -35.23 -0.46 -14.65 16 11 C -0.54 -13.28 8.25 -34.44 -0.28 -13.56 16 12 H 0.07 1.62 7.77 -52.49 -0.41 1.21 16 13 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 14 N -0.90 -22.18 10.78 55.43 0.60 -21.58 16 15 Si 0.90 19.56 29.54 -169.99 -5.02 14.54 16 16 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 19 C 0.12 2.41 6.10 -2.53 -0.02 2.39 16 20 C -0.04 -0.39 3.78 -104.69 -0.40 -0.79 16 21 C -0.12 -1.36 7.23 -39.43 -0.28 -1.65 16 22 C 0.11 1.19 7.29 -39.48 -0.29 0.90 16 23 F -0.13 -1.56 17.26 2.25 0.04 -1.52 16 24 C -0.11 -0.96 9.73 -39.10 -0.38 -1.34 16 25 C 0.00 0.01 5.73 -106.94 -0.61 -0.61 16 26 C 0.26 2.49 15.33 -22.47 -0.34 2.14 16 27 N -0.41 -4.83 18.54 41.84 0.78 -4.06 16 28 C -0.07 -0.58 8.62 -39.16 -0.34 -0.92 16 29 H 0.07 0.50 7.54 -51.93 -0.39 0.11 16 30 H 0.07 0.83 8.01 -51.93 -0.42 0.41 16 31 H 0.08 0.81 5.10 -51.93 -0.26 0.54 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.81 8.04 -51.93 -0.42 0.39 16 34 H 0.06 0.47 7.94 -51.93 -0.41 0.06 16 35 H 0.05 0.76 5.90 -51.93 -0.31 0.45 16 36 H 0.07 1.03 5.65 -51.93 -0.29 0.74 16 37 H 0.08 1.74 7.85 -51.93 -0.41 1.33 16 38 H 0.07 1.36 8.03 -51.93 -0.42 0.94 16 39 H 0.39 9.53 6.93 45.56 0.32 9.85 16 40 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 41 H 0.07 1.63 7.99 -51.93 -0.42 1.21 16 42 H 0.07 1.41 8.01 -51.93 -0.42 1.00 16 43 H 0.15 2.08 5.96 -52.48 -0.31 1.77 16 44 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 45 H 0.14 0.88 7.54 -52.49 -0.40 0.48 16 LS Contribution 371.03 15.07 5.59 5.59 Total: -1.00 -27.82 371.03 -6.62 -34.44 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -4.94 Total: 10.57 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -2.88 Total: -1.81 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.96 Total: -36.52 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.37 Total: -25.29 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -27.82 -6.62 -34.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592852157.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.324 kcal (2) G-P(sol) polarization free energy of solvation -27.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds