Wall clock time and date at job start Sat Apr 11 2020 07:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47315 * 2 1 4 4 C 1.50691 * 109.47291 * 239.99667 * 2 1 3 5 5 O 1.21283 * 120.00206 * 125.52593 * 4 2 1 6 6 N 1.34778 * 120.00221 * 305.52124 * 4 2 1 7 7 C 1.47025 * 125.64685 * 4.39376 * 6 4 2 8 8 C 1.54333 * 107.26638 * 178.84992 * 7 6 4 9 9 C 1.55156 * 103.01763 * 338.14012 * 8 7 6 10 10 O 1.42903 * 111.03772 * 277.21671 * 9 8 7 11 11 C 1.50706 * 111.00254 * 153.38424 * 9 8 7 12 12 H 1.08001 * 119.99755 * 247.80589 * 11 9 8 13 13 C 1.37875 * 120.00075 * 67.79690 * 11 9 8 14 14 N 1.31513 * 120.00086 * 0.02562 * 13 11 9 15 15 Si 1.86802 * 120.00057 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46618 * 90.00407 * 15 13 11 17 17 H 1.48494 * 109.47337 * 210.00575 * 15 13 11 18 18 H 1.48502 * 109.47321 * 330.00883 * 15 13 11 19 19 C 1.47428 * 125.65075 * 184.70397 * 6 4 2 20 20 C 1.50708 * 109.46949 * 119.99661 * 2 1 3 21 21 C 1.38340 * 119.91143 * 127.08829 * 20 2 1 22 22 C 1.38555 * 120.28275 * 179.97438 * 21 20 2 23 23 F 1.35097 * 119.95012 * 179.97438 * 22 21 20 24 24 C 1.38194 * 120.09576 * 359.97438 * 22 21 20 25 25 C 1.39584 * 119.82271 * 0.02562 * 24 22 21 26 26 C 1.43205 * 120.14063 * 180.02562 * 25 24 22 27 27 N 5.95777 * 86.98634 * 92.72028 * 2 1 3 28 28 C 1.37938 * 119.90579 * 307.06235 * 20 2 1 29 29 H 1.09005 * 109.47395 * 317.38667 * 1 2 3 30 30 H 1.09004 * 109.47003 * 77.38467 * 1 2 3 31 31 H 1.08996 * 109.47272 * 197.38616 * 1 2 3 32 32 H 1.08997 * 109.47127 * 175.05494 * 3 2 1 33 33 H 1.09002 * 109.46880 * 295.05734 * 3 2 1 34 34 H 1.09001 * 109.47063 * 55.05378 * 3 2 1 35 35 H 1.09003 * 109.87869 * 298.39310 * 7 6 4 36 36 H 1.08997 * 109.87979 * 59.55901 * 7 6 4 37 37 H 1.09000 * 110.84868 * 219.67127 * 8 7 6 38 38 H 1.09001 * 110.66553 * 96.52279 * 8 7 6 39 39 H 0.96707 * 113.99911 * 292.21593 * 10 9 8 40 40 H 0.97004 * 120.00420 * 179.97438 * 14 13 11 41 41 H 1.08994 * 110.36234 * 322.92743 * 19 6 4 42 42 H 1.08994 * 110.36802 * 85.25066 * 19 6 4 43 43 H 1.08003 * 119.85545 * 0.25462 * 21 20 2 44 44 H 1.08001 * 120.09035 * 179.97438 * 24 22 21 45 45 H 1.07990 * 120.05608 * 0.02562 * 28 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2303 5 8 2.8099 -0.1543 -1.9767 6 7 1.6177 -1.9639 -1.5013 7 6 0.6136 -2.7183 -0.7369 8 6 0.4432 -4.0866 -1.4301 9 6 0.9522 -3.8146 -2.8703 10 8 -0.0724 -3.2260 -3.6739 11 6 1.4748 -5.0771 -3.5059 12 1 2.5292 -5.1793 -3.7164 13 6 0.6070 -6.1018 -3.8186 14 7 -0.6770 -5.9773 -3.5626 15 14 1.2546 -7.6665 -4.6072 16 1 1.6263 -8.6378 -3.5471 17 1 0.2023 -8.2569 -5.4727 18 1 2.4504 -7.3487 -5.4285 19 6 2.1004 -2.8079 -2.6095 20 6 2.0323 -0.7104 1.2306 21 6 2.9440 -1.7435 1.1069 22 6 3.4113 -2.4015 2.2331 23 9 4.3012 -3.4098 2.1045 24 6 2.9685 -2.0279 3.4877 25 6 2.0486 -0.9861 3.6174 26 6 1.5855 -0.5929 4.9142 27 7 1.2168 -0.2824 5.9428 28 6 1.5821 -0.3283 2.4772 29 1 -0.3634 0.7563 0.6958 30 1 -0.3633 0.2245 -1.0029 31 1 -0.3633 -0.9807 0.3071 32 1 3.1264 1.4438 0.0886 33 1 1.7508 1.9301 -0.9310 34 1 1.6062 1.9813 0.8424 35 1 0.9574 -2.8599 0.2878 36 1 -0.3353 -2.1819 -0.7410 37 1 -0.6043 -4.3878 -1.4417 38 1 1.0555 -4.8444 -0.9413 39 1 -0.8126 -3.8188 -3.8638 40 1 -1.2877 -6.6981 -3.7829 41 1 2.2821 -2.2016 -3.4968 42 1 3.0083 -3.3354 -2.3170 43 1 3.2965 -2.0353 0.1286 44 1 3.3325 -2.5411 4.3655 45 1 0.8704 0.4784 2.5714 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592852157.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:46:56 Heat of formation + Delta-G solvation = -83.658702 kcal Electronic energy + Delta-G solvation = -31372.941882 eV Core-core repulsion = 27076.599900 eV Total energy + Delta-G solvation = -4296.341982 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.98099 -42.08501 -40.21363 -39.03639 -37.68105 -36.27571 -35.91364 -34.11531 -32.38014 -31.51061 -30.98193 -30.09157 -28.12215 -27.21735 -25.40830 -25.18783 -23.91940 -22.18165 -21.50962 -20.74831 -19.52935 -19.04474 -17.98742 -17.79672 -17.36329 -17.09992 -16.93905 -16.74037 -16.53891 -16.35049 -15.89489 -15.61660 -15.06646 -15.05956 -14.72746 -14.56369 -14.41937 -14.23482 -13.87997 -13.82088 -13.75287 -13.59245 -13.32514 -13.19939 -13.14682 -13.04634 -12.96384 -12.82628 -12.71026 -12.58523 -12.41901 -12.28906 -12.03466 -11.92634 -11.67955 -11.26703 -10.79977 -10.60257 -10.16254 -10.04944 -9.83997 -9.53219 -8.24311 -6.38031 -0.48689 -0.01035 1.42031 1.45874 1.49609 1.53967 1.59209 1.71833 2.02293 2.40510 2.55871 2.63401 3.00578 3.07983 3.37694 3.49753 3.79445 3.84711 3.91574 3.95898 3.98739 4.04485 4.11594 4.32068 4.34990 4.40521 4.59935 4.63704 4.74228 4.79357 4.83867 4.86861 4.90902 4.94521 4.98692 5.06348 5.14759 5.20604 5.28648 5.32511 5.39832 5.46393 5.55187 5.57760 5.79103 6.07309 6.36240 6.61629 6.66539 7.12316 7.33316 7.47953 8.81686 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.013209 B = 0.003486 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.314050 B = 8029.783993 C = 8861.330127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.028 4.028 3 C -0.123 4.123 4 C 0.526 3.474 5 O -0.586 6.586 6 N -0.603 5.603 7 C 0.102 3.898 8 C -0.131 4.131 9 C 0.237 3.763 10 O -0.594 6.594 11 C -0.561 4.561 12 H 0.054 0.946 13 C 0.038 3.962 14 N -0.908 5.908 15 Si 0.957 3.043 16 H -0.273 1.273 17 H -0.281 1.281 18 H -0.277 1.277 19 C 0.123 3.877 20 C -0.042 4.042 21 C -0.130 4.130 22 C 0.097 3.903 23 F -0.141 7.141 24 C -0.093 4.093 25 C 0.009 3.991 26 C 0.285 3.715 27 N -0.445 5.445 28 C -0.047 4.047 29 H 0.110 0.890 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.381 0.619 40 H 0.272 0.728 41 H 0.046 0.954 42 H 0.070 0.930 43 H 0.118 0.882 44 H 0.167 0.833 45 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.270 9.780 14.567 17.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.032 4.032 3 C -0.180 4.180 4 C 0.316 3.684 5 O -0.466 6.466 6 N -0.334 5.334 7 C -0.020 4.020 8 C -0.170 4.170 9 C 0.197 3.803 10 O -0.404 6.404 11 C -0.599 4.599 12 H 0.073 0.927 13 C -0.163 4.163 14 N -0.548 5.548 15 Si 0.783 3.217 16 H -0.198 1.198 17 H -0.206 1.206 18 H -0.202 1.202 19 C 0.000 4.000 20 C -0.043 4.043 21 C -0.150 4.150 22 C 0.078 3.922 23 F -0.120 7.120 24 C -0.114 4.114 25 C 0.006 3.994 26 C -0.031 4.031 27 N -0.120 5.120 28 C -0.067 4.067 29 H 0.128 0.872 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.123 0.877 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.232 0.768 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.089 0.911 43 H 0.135 0.865 44 H 0.184 0.816 45 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 1.381 11.009 15.805 19.311 hybrid contribution 0.521 -2.196 -1.662 2.803 sum 1.902 8.813 14.144 16.773 Atomic orbital electron populations 1.22277 0.89633 1.05253 1.03852 1.19791 0.98988 0.96616 0.87758 1.21760 1.01560 0.90933 1.03741 1.20788 0.80378 0.79704 0.87539 1.90661 1.37972 1.66017 1.51974 1.48622 1.41093 1.13728 1.29964 1.22507 0.91849 0.92566 0.95070 1.22999 1.01934 0.94658 0.97386 1.19710 0.84379 0.88497 0.87705 1.86086 1.35375 1.45127 1.73813 1.21716 0.94791 1.00924 1.42483 0.92739 1.25561 0.95117 1.00914 0.94754 1.69608 1.02808 1.34642 1.47702 0.85571 0.78020 0.79561 0.78538 1.19818 1.20636 1.20214 1.22134 0.97115 0.91783 0.88955 1.19115 0.96027 0.94877 0.94272 1.21450 0.98169 0.96828 0.98521 1.17343 0.92281 0.88699 0.93892 1.91538 1.65813 1.57884 1.96752 1.21224 0.96548 0.96752 0.96844 1.15424 0.99635 0.98248 0.86110 1.25328 0.92753 0.92799 0.92181 1.81334 1.09487 1.09217 1.11934 1.21176 0.98277 0.99080 0.88212 0.87180 0.92717 0.90163 0.92762 0.92399 0.87673 0.89952 0.89616 0.91030 0.92126 0.76760 0.91837 0.93577 0.91145 0.86451 0.81585 0.80635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 7.05 71.98 0.51 -2.07 16 2 C -0.03 -0.60 0.59 -53.67 -0.03 -0.63 16 3 C -0.12 -2.23 7.57 71.98 0.54 -1.69 16 4 C 0.53 17.34 4.95 87.65 0.43 17.77 16 5 O -0.59 -23.94 16.22 -3.04 -0.05 -23.99 16 6 N -0.60 -21.27 2.43 -811.78 -1.97 -23.24 16 7 C 0.10 3.16 4.94 86.73 0.43 3.59 16 8 C -0.13 -5.23 5.64 31.79 0.18 -5.05 16 9 C 0.24 11.07 0.89 -10.15 -0.01 11.06 16 10 O -0.59 -29.74 13.18 -148.98 -1.96 -31.70 16 11 C -0.56 -28.68 8.25 25.60 0.21 -28.47 16 12 H 0.05 2.82 7.77 -2.91 -0.02 2.79 16 13 C 0.04 1.88 5.30 84.65 0.45 2.33 16 14 N -0.91 -45.25 10.78 21.45 0.23 -45.02 16 15 Si 0.96 40.45 29.54 68.60 2.03 42.47 16 16 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 17 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 18 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 19 C 0.12 5.32 6.10 86.85 0.53 5.85 16 20 C -0.04 -0.76 3.78 -19.91 -0.08 -0.83 16 21 C -0.13 -2.93 7.23 22.37 0.16 -2.77 16 22 C 0.10 1.94 7.29 22.33 0.16 2.11 16 23 F -0.14 -3.39 17.26 44.97 0.78 -2.61 16 24 C -0.09 -1.31 9.73 22.58 0.22 -1.09 16 25 C 0.01 0.12 5.73 -21.37 -0.12 0.00 16 26 C 0.28 4.34 15.33 88.33 1.35 5.69 16 27 N -0.44 -9.06 18.54 19.01 0.35 -8.71 16 28 C -0.05 -0.55 8.62 22.54 0.19 -0.36 16 29 H 0.11 0.98 7.54 -2.38 -0.02 0.96 16 30 H 0.05 1.14 8.01 -2.38 -0.02 1.12 16 31 H 0.08 1.34 5.10 -2.39 -0.01 1.32 16 32 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.06 1.22 8.04 -2.39 -0.02 1.21 16 34 H 0.10 1.04 7.94 -2.39 -0.02 1.02 16 35 H 0.08 2.13 5.90 -2.39 -0.01 2.12 16 36 H 0.09 2.41 5.65 -2.39 -0.01 2.40 16 37 H 0.07 3.01 7.85 -2.39 -0.02 2.99 16 38 H 0.06 2.46 8.03 -2.39 -0.02 2.44 16 39 H 0.38 19.37 6.93 -74.05 -0.51 18.86 16 40 H 0.27 12.94 8.31 -92.71 -0.77 12.16 16 41 H 0.05 2.20 7.99 -2.39 -0.02 2.18 16 42 H 0.07 2.98 8.01 -2.39 -0.02 2.97 16 43 H 0.12 3.40 5.96 -2.91 -0.02 3.39 16 44 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 45 H 0.18 0.96 7.54 -2.92 -0.02 0.94 16 Total: -1.00 -63.42 371.03 5.08 -58.34 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: 0.54 Total: 29.03 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: 5.14 Total: 5.43 kcal Atomic # 7 Polarization: -75.59 SS G_CDS: -1.39 Total: -76.97 kcal Atomic # 8 Polarization: -53.67 SS G_CDS: -2.01 Total: -55.69 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.78 Total: -2.61 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.47 kcal Total: -63.42 5.08 -58.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592852157.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.315 kcal (2) G-P(sol) polarization free energy of solvation -63.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds