Wall clock time and date at job start Sat Apr 11 2020 07:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 N 1.46495 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.34965 * 125.97869 * 124.71943 * 10 9 7 12 12 C 1.35241 * 107.86302 * 179.87777 * 11 10 9 13 13 C 1.40411 * 107.86611 * 0.38043 * 12 11 10 14 14 N 1.40156 * 125.97049 * 179.75956 * 13 12 11 15 15 C 1.34768 * 120.00143 * 0.03124 * 14 13 12 16 16 O 1.21284 * 120.00281 * 359.97438 * 15 14 13 17 17 C 1.50707 * 119.99811 * 179.97438 * 15 14 13 18 18 N 1.46499 * 109.47154 * 179.97438 * 17 15 14 19 19 N 1.40318 * 126.32670 * 269.69653 * 18 17 15 20 20 C 1.28865 * 108.11771 * 180.02562 * 19 18 17 21 21 N 1.38010 * 108.82163 * 1.12240 * 20 19 18 22 22 C 1.34306 * 108.32833 * 358.31401 * 21 20 19 23 23 O 1.21811 * 126.32266 * 181.53592 * 22 21 20 24 24 C 1.46721 * 124.16382 * 177.45810 * 21 20 19 25 25 C 1.53284 * 108.65397 * 19.60357 * 24 21 20 26 26 C 1.53227 * 109.36686 * 308.14544 * 25 24 21 27 27 C 1.51121 * 127.46668 * 181.73612 * 20 19 18 28 28 N 1.31221 * 108.05164 * 359.76641 * 13 12 11 29 29 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 31 31 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 32 32 H 1.08000 * 126.06750 * 0.02562 * 11 10 9 33 33 H 1.07998 * 126.06422 * 180.12700 * 12 11 10 34 34 H 0.97004 * 119.99831 * 180.02562 * 14 13 12 35 35 H 1.08990 * 109.47356 * 300.00248 * 17 15 14 36 36 H 1.09000 * 109.46854 * 60.00254 * 17 15 14 37 37 H 1.08999 * 109.60720 * 139.35765 * 24 21 20 38 38 H 1.09004 * 109.60137 * 259.68097 * 24 21 20 39 39 H 1.08999 * 109.49143 * 68.11281 * 25 24 21 40 40 H 1.08998 * 109.48451 * 188.17977 * 25 24 21 41 41 H 1.09006 * 109.54170 * 190.53627 * 26 25 24 42 42 H 1.09001 * 109.54707 * 310.80483 * 26 25 24 43 43 H 1.09002 * 109.75041 * 78.00424 * 27 20 19 44 44 H 1.09000 * 109.79022 * 317.29981 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 7 3.9999 -2.5752 -0.0181 11 6 4.8469 -3.1128 -0.9209 12 6 5.0532 -4.4047 -0.5782 13 6 4.2965 -4.6708 0.5743 14 7 4.2280 -5.8973 1.2491 15 6 4.9313 -6.9547 0.7982 16 8 5.6232 -6.8453 -0.1919 17 6 4.8580 -8.2733 1.5242 18 7 5.7049 -9.2545 0.8413 19 7 5.3079 -10.1221 -0.1876 20 6 6.3279 -10.8317 -0.5293 21 7 7.4009 -10.4801 0.2642 22 6 7.0111 -9.4943 1.0890 23 8 7.7069 -8.9221 1.9089 24 6 8.7201 -11.1186 0.1963 25 6 8.8507 -11.8316 -1.1544 26 6 7.6381 -12.7439 -1.3666 27 6 6.3973 -11.8767 -1.6187 28 7 3.6647 -3.5705 0.9089 29 1 -0.4850 0.8400 0.0004 30 1 3.8711 -0.6780 -0.9023 31 1 3.8785 -0.6824 0.8776 32 1 5.2843 -2.6013 -1.7656 33 1 5.6844 -5.1081 -1.1009 34 1 3.6744 -5.9849 2.0409 35 1 5.2056 -8.1436 2.5490 36 1 3.8270 -8.6269 1.5322 37 1 9.4983 -10.3608 0.2866 38 1 8.8184 -11.8420 1.0057 39 1 8.8934 -11.0917 -1.9536 40 1 9.7618 -12.4298 -1.1631 41 1 7.8133 -13.3888 -2.2278 42 1 7.4814 -13.3550 -0.4777 43 1 6.4790 -11.3905 -2.5909 44 1 5.5020 -12.4979 -1.5918 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593064546.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:47:00 Heat of formation + Delta-G solvation = 102.443332 kcal Electronic energy + Delta-G solvation = -29328.226138 eV Core-core repulsion = 25092.166859 eV Total energy + Delta-G solvation = -4236.059280 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.154 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.81786 -40.74940 -39.35850 -37.93183 -37.05600 -34.84079 -33.87000 -33.30628 -32.82838 -31.31398 -29.52285 -29.31973 -28.36931 -26.99210 -24.92161 -23.07492 -22.94054 -22.16156 -21.39931 -20.22876 -20.15299 -19.68269 -17.62945 -17.57113 -17.06556 -16.68439 -16.62445 -16.10531 -16.09700 -15.32218 -15.29744 -14.93154 -14.79552 -14.69866 -14.42207 -14.04896 -13.83970 -13.64404 -13.25658 -13.07289 -12.70627 -12.57099 -12.37426 -12.31673 -12.21247 -12.01571 -11.69558 -11.56955 -11.52821 -11.16432 -10.89259 -10.56970 -10.48822 -10.40065 -10.09755 -9.98177 -9.65862 -9.52501 -8.76512 -8.72083 -8.20623 -7.54845 -6.23233 -4.25575 1.38261 1.69386 2.21992 2.42413 2.63847 2.80619 2.88110 3.16770 3.21784 3.24741 3.64166 3.74401 3.82575 4.02835 4.12175 4.20686 4.23109 4.48529 4.55545 4.72352 4.80206 4.85082 4.92618 5.04594 5.08720 5.14346 5.19886 5.27024 5.38010 5.43077 5.56509 5.63059 5.68606 5.83618 6.15262 6.25430 6.38833 6.43596 6.54441 6.64328 7.24299 7.31404 7.40476 7.52763 7.80709 7.84787 8.15052 8.33523 8.54805 8.86357 9.31633 10.89401 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.028895 B = 0.001886 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.804242 B =14842.577426 C =14879.622358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.076 3.924 3 Si 0.875 3.125 4 H -0.272 1.272 5 H -0.265 1.265 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.086 0.914 9 C 0.232 3.768 10 N -0.318 5.318 11 C 0.052 3.948 12 C -0.283 4.283 13 C 0.262 3.738 14 N -0.627 5.627 15 C 0.503 3.497 16 O -0.503 6.503 17 C 0.150 3.850 18 N -0.439 5.439 19 N -0.267 5.267 20 C 0.278 3.722 21 N -0.556 5.556 22 C 0.658 3.342 23 O -0.552 6.552 24 C 0.131 3.869 25 C -0.138 4.138 26 C -0.124 4.124 27 C -0.040 4.040 28 N -0.295 5.295 29 H 0.268 0.732 30 H 0.053 0.947 31 H 0.038 0.962 32 H 0.169 0.831 33 H 0.159 0.841 34 H 0.414 0.586 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.074 0.926 43 H 0.104 0.896 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.352 -28.218 -1.929 32.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.128 4.128 3 Si 0.701 3.299 4 H -0.197 1.197 5 H -0.190 1.190 6 H -0.206 1.206 7 C -0.572 4.572 8 H 0.104 0.896 9 C 0.113 3.887 10 N -0.100 5.100 11 C -0.097 4.097 12 C -0.314 4.314 13 C 0.008 3.992 14 N -0.276 5.276 15 C 0.286 3.714 16 O -0.375 6.375 17 C 0.024 3.976 18 N -0.259 5.259 19 N -0.088 5.088 20 C -0.001 4.001 21 N -0.285 5.285 22 C 0.358 3.642 23 O -0.425 6.425 24 C 0.009 3.991 25 C -0.176 4.176 26 C -0.162 4.162 27 C -0.080 4.080 28 N -0.126 5.126 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.186 0.814 33 H 0.177 0.823 34 H 0.249 0.751 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.110 0.890 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.111 0.889 41 H 0.106 0.894 42 H 0.093 0.907 43 H 0.122 0.878 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 15.353 -26.684 -1.329 30.815 hybrid contribution 1.172 0.690 0.014 1.360 sum 16.525 -25.995 -1.315 30.830 Atomic orbital electron populations 1.69873 1.06136 1.27293 1.49152 1.24835 0.94886 0.98802 0.94266 0.86885 0.80223 0.83803 0.79008 1.19695 1.18982 1.20582 1.21105 0.87749 0.95720 1.52667 0.89625 1.20066 0.97485 0.72945 0.98234 1.48620 1.32782 1.10177 1.18425 1.22541 0.96014 0.94637 0.96534 1.21516 1.11480 0.96810 1.01564 1.19062 0.98989 0.86513 0.94638 1.42319 1.47537 1.07316 1.30401 1.20893 0.79824 0.85129 0.85550 1.90667 1.38668 1.83138 1.25051 1.21109 0.96978 0.83957 0.95543 1.48213 1.09089 1.34513 1.34044 1.76785 1.21347 1.05324 1.05320 1.24275 0.83006 0.97575 0.95196 1.46025 1.13165 1.34787 1.34566 1.16433 0.82947 0.81560 0.83281 1.91092 1.57858 1.55452 1.38087 1.21792 0.81005 0.97263 0.98993 1.21990 0.99722 0.99524 0.96334 1.21723 0.93203 0.97664 1.03638 1.20512 1.00834 0.92869 0.93775 1.77395 1.23635 0.95463 1.16060 0.92176 0.92887 0.94422 0.81379 0.82343 0.75087 0.85303 0.85131 0.88989 0.90006 0.90265 0.88855 0.89358 0.90702 0.87790 0.87570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.70 13.96 55.43 0.77 -25.92 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.05 16 3 Si 0.87 20.33 27.47 -169.99 -4.67 15.66 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 5 H -0.27 -5.74 6.54 56.52 0.37 -5.37 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.53 -15.20 9.79 -34.44 -0.34 -15.53 16 8 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 9 C 0.23 5.57 5.33 -5.20 -0.03 5.54 16 10 N -0.32 -7.36 3.67 -62.56 -0.23 -7.59 16 11 C 0.05 1.04 11.43 -17.24 -0.20 0.84 16 12 C -0.28 -5.74 9.61 -39.83 -0.38 -6.12 16 13 C 0.26 5.35 8.11 -154.39 -1.25 4.10 16 14 N -0.63 -9.81 5.45 -11.13 -0.06 -9.87 16 15 C 0.50 7.65 7.87 -10.99 -0.09 7.57 16 16 O -0.50 -9.57 13.56 5.55 0.08 -9.49 16 17 C 0.15 1.65 6.87 -5.19 -0.04 1.62 16 18 N -0.44 -5.82 3.12 -66.41 -0.21 -6.02 16 19 N -0.27 -3.22 12.51 33.13 0.41 -2.80 16 20 C 0.28 2.59 7.73 -153.76 -1.19 1.40 16 21 N -0.56 -5.79 3.13 -117.55 -0.37 -6.15 16 22 C 0.66 9.42 8.64 -87.05 -0.75 8.67 16 23 O -0.55 -9.56 17.83 5.09 0.09 -9.47 16 24 C 0.13 0.84 6.88 -3.77 -0.03 0.81 16 25 C -0.14 -0.44 5.94 -26.47 -0.16 -0.59 16 26 C -0.12 -0.28 5.96 -26.37 -0.16 -0.44 16 27 C -0.04 -0.17 6.32 -27.44 -0.17 -0.35 16 28 N -0.29 -6.86 12.42 31.44 0.39 -6.47 16 29 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.05 1.17 7.12 -51.93 -0.37 0.80 16 31 H 0.04 0.89 7.57 -51.93 -0.39 0.50 16 32 H 0.17 2.68 8.06 -52.49 -0.42 2.25 16 33 H 0.16 3.20 5.92 -52.49 -0.31 2.89 16 34 H 0.41 5.00 8.82 -40.82 -0.36 4.64 16 35 H 0.13 1.14 8.12 -51.93 -0.42 0.71 16 36 H 0.13 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.31 8.10 -51.93 -0.42 -0.11 16 40 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 41 H 0.09 0.05 8.14 -51.93 -0.42 -0.38 16 42 H 0.07 0.17 8.11 -51.93 -0.42 -0.25 16 43 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 374.98 15.07 5.65 5.65 Total: -1.00 -40.69 374.98 -8.68 -49.37 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -5.67 Total: 3.56 kcal Atomic # 6 Polarization: 14.42 SS G_CDS: -4.87 Total: 9.55 kcal Atomic # 7 Polarization: -65.55 SS G_CDS: 0.71 Total: -64.83 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: 0.17 Total: -18.96 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.67 Total: 15.66 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -40.69 -8.68 -49.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593064546.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.814 kcal (2) G-P(sol) polarization free energy of solvation -40.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds