Wall clock time and date at job start Sat Apr 11 2020 07:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 N 1.46495 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.34965 * 125.97869 * 124.71943 * 10 9 7 12 12 C 1.35241 * 107.86302 * 179.87777 * 11 10 9 13 13 C 1.40411 * 107.86611 * 0.38043 * 12 11 10 14 14 N 1.40156 * 125.97049 * 179.75956 * 13 12 11 15 15 C 1.34768 * 120.00143 * 0.03124 * 14 13 12 16 16 O 1.21284 * 120.00281 * 359.97438 * 15 14 13 17 17 C 1.50707 * 119.99811 * 179.97438 * 15 14 13 18 18 N 1.46499 * 109.47154 * 179.97438 * 17 15 14 19 19 N 1.40318 * 126.32670 * 269.69653 * 18 17 15 20 20 C 1.28865 * 108.11771 * 180.02562 * 19 18 17 21 21 N 1.38010 * 108.82163 * 1.12240 * 20 19 18 22 22 C 1.34306 * 108.32833 * 358.31401 * 21 20 19 23 23 O 1.21811 * 126.32266 * 181.53592 * 22 21 20 24 24 C 1.46721 * 124.16382 * 177.45810 * 21 20 19 25 25 C 1.53284 * 108.65397 * 19.60357 * 24 21 20 26 26 C 1.53227 * 109.36686 * 308.14544 * 25 24 21 27 27 C 1.51121 * 127.46668 * 181.73612 * 20 19 18 28 28 N 1.31221 * 108.05164 * 359.76641 * 13 12 11 29 29 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 31 31 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 32 32 H 1.08000 * 126.06750 * 0.02562 * 11 10 9 33 33 H 1.07998 * 126.06422 * 180.12700 * 12 11 10 34 34 H 0.97004 * 119.99831 * 180.02562 * 14 13 12 35 35 H 1.08990 * 109.47356 * 300.00248 * 17 15 14 36 36 H 1.09000 * 109.46854 * 60.00254 * 17 15 14 37 37 H 1.08999 * 109.60720 * 139.35765 * 24 21 20 38 38 H 1.09004 * 109.60137 * 259.68097 * 24 21 20 39 39 H 1.08999 * 109.49143 * 68.11281 * 25 24 21 40 40 H 1.08998 * 109.48451 * 188.17977 * 25 24 21 41 41 H 1.09006 * 109.54170 * 190.53627 * 26 25 24 42 42 H 1.09001 * 109.54707 * 310.80483 * 26 25 24 43 43 H 1.09002 * 109.75041 * 78.00424 * 27 20 19 44 44 H 1.09000 * 109.79022 * 317.29981 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 7 3.9999 -2.5752 -0.0181 11 6 4.8469 -3.1128 -0.9209 12 6 5.0532 -4.4047 -0.5782 13 6 4.2965 -4.6708 0.5743 14 7 4.2280 -5.8973 1.2491 15 6 4.9313 -6.9547 0.7982 16 8 5.6232 -6.8453 -0.1919 17 6 4.8580 -8.2733 1.5242 18 7 5.7049 -9.2545 0.8413 19 7 5.3079 -10.1221 -0.1876 20 6 6.3279 -10.8317 -0.5293 21 7 7.4009 -10.4801 0.2642 22 6 7.0111 -9.4943 1.0890 23 8 7.7069 -8.9221 1.9089 24 6 8.7201 -11.1186 0.1963 25 6 8.8507 -11.8316 -1.1544 26 6 7.6381 -12.7439 -1.3666 27 6 6.3973 -11.8767 -1.6187 28 7 3.6647 -3.5705 0.9089 29 1 -0.4850 0.8400 0.0004 30 1 3.8711 -0.6780 -0.9023 31 1 3.8785 -0.6824 0.8776 32 1 5.2843 -2.6013 -1.7656 33 1 5.6844 -5.1081 -1.1009 34 1 3.6744 -5.9849 2.0409 35 1 5.2056 -8.1436 2.5490 36 1 3.8270 -8.6269 1.5322 37 1 9.4983 -10.3608 0.2866 38 1 8.8184 -11.8420 1.0057 39 1 8.8934 -11.0917 -1.9536 40 1 9.7618 -12.4298 -1.1631 41 1 7.8133 -13.3888 -2.2278 42 1 7.4814 -13.3550 -0.4777 43 1 6.4790 -11.3905 -2.5909 44 1 5.5020 -12.4979 -1.5918 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593064546.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:46:59 Heat of formation + Delta-G solvation = 73.098393 kcal Electronic energy + Delta-G solvation = -29329.498630 eV Core-core repulsion = 25092.166859 eV Total energy + Delta-G solvation = -4237.331772 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.154 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.66973 -42.29891 -40.70222 -38.82108 -37.82162 -36.33501 -35.25925 -34.53241 -33.66031 -33.08479 -31.08318 -30.12659 -29.42759 -28.58881 -25.62196 -24.56902 -23.64748 -23.42198 -22.60350 -21.77323 -21.12797 -20.67946 -19.13606 -18.74584 -18.51403 -18.09406 -17.57530 -17.29429 -17.06787 -16.71021 -16.53781 -16.14417 -15.72614 -15.42299 -15.30632 -15.17113 -15.00398 -14.82927 -14.46894 -14.28555 -13.97905 -13.95476 -13.89740 -13.47140 -13.14488 -13.02690 -12.88050 -12.67135 -12.22718 -12.06877 -11.87288 -11.84207 -11.83789 -11.74153 -11.54785 -11.37424 -11.34733 -10.89058 -10.82147 -9.84358 -9.68667 -9.19139 -8.38730 -6.49214 0.50795 0.81324 0.92305 1.26253 1.33084 1.36728 1.38890 1.47413 1.54858 1.97881 2.11916 2.27480 2.30204 2.93605 3.20172 3.39463 3.58387 3.76096 3.85960 3.88870 3.92394 4.06469 4.14911 4.34912 4.39567 4.44382 4.55762 4.56116 4.66772 4.77584 4.82396 4.83147 4.88542 4.90864 4.99041 5.06957 5.07741 5.19284 5.22157 5.36738 5.59285 5.79701 5.96131 6.11826 6.36485 6.53905 6.56087 6.81472 6.88280 7.00024 7.13508 8.78182 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.028895 B = 0.001886 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.804242 B =14842.577426 C =14879.622358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.014 3.986 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.231 1.231 6 H -0.277 1.277 7 C -0.547 4.547 8 H 0.027 0.973 9 C 0.238 3.762 10 N -0.342 5.342 11 C 0.063 3.937 12 C -0.297 4.297 13 C 0.266 3.734 14 N -0.619 5.619 15 C 0.503 3.497 16 O -0.542 6.542 17 C 0.152 3.848 18 N -0.447 5.447 19 N -0.300 5.300 20 C 0.288 3.712 21 N -0.554 5.554 22 C 0.640 3.360 23 O -0.595 6.595 24 C 0.118 3.882 25 C -0.131 4.131 26 C -0.117 4.117 27 C -0.042 4.042 28 N -0.342 5.342 29 H 0.272 0.728 30 H 0.083 0.917 31 H 0.045 0.955 32 H 0.211 0.789 33 H 0.160 0.840 34 H 0.429 0.571 35 H 0.152 0.848 36 H 0.168 0.832 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.071 0.929 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.079 0.921 43 H 0.115 0.885 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.423 -29.401 -3.113 34.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.184 4.184 3 Si 0.776 3.224 4 H -0.191 1.191 5 H -0.154 1.154 6 H -0.202 1.202 7 C -0.585 4.585 8 H 0.045 0.955 9 C 0.119 3.881 10 N -0.124 5.124 11 C -0.085 4.085 12 C -0.328 4.328 13 C 0.011 3.989 14 N -0.270 5.270 15 C 0.289 3.711 16 O -0.417 6.417 17 C 0.027 3.973 18 N -0.265 5.265 19 N -0.122 5.122 20 C 0.010 3.990 21 N -0.282 5.282 22 C 0.339 3.661 23 O -0.472 6.472 24 C -0.002 4.002 25 C -0.168 4.168 26 C -0.155 4.155 27 C -0.081 4.081 28 N -0.172 5.172 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.227 0.773 33 H 0.178 0.822 34 H 0.268 0.732 35 H 0.169 0.831 36 H 0.185 0.815 37 H 0.097 0.903 38 H 0.115 0.885 39 H 0.090 0.910 40 H 0.139 0.861 41 H 0.135 0.865 42 H 0.098 0.902 43 H 0.133 0.867 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 17.430 -27.945 -2.521 33.031 hybrid contribution 0.521 0.842 0.343 1.048 sum 17.951 -27.103 -2.178 32.581 Atomic orbital electron populations 1.70045 1.08516 1.28821 1.50546 1.25917 0.95802 1.03510 0.93221 0.85617 0.79856 0.77277 0.79621 1.19054 1.15358 1.20239 1.21211 0.90379 0.93788 1.53138 0.95457 1.19930 0.94288 0.74177 0.99722 1.48539 1.34202 1.10070 1.19589 1.23208 0.94372 0.94535 0.96418 1.21681 1.11952 0.97269 1.01888 1.19450 0.97568 0.87282 0.94622 1.42447 1.47848 1.05993 1.30674 1.21745 0.78358 0.85959 0.85018 1.90635 1.40236 1.83857 1.26979 1.21374 0.99005 0.81372 0.95536 1.48434 1.08991 1.34697 1.34390 1.76801 1.22731 1.06555 1.06090 1.25335 0.81794 0.97037 0.94808 1.46313 1.14634 1.33714 1.33504 1.16807 0.83276 0.82362 0.83680 1.91035 1.58934 1.57215 1.40038 1.22198 0.78899 0.97243 1.01852 1.22028 1.01596 0.99511 0.93707 1.21758 0.91367 0.97212 1.05160 1.20892 1.02928 0.92058 0.92214 1.77318 1.25665 0.96586 1.17663 0.91843 0.89893 0.93680 0.77278 0.82245 0.73231 0.83092 0.81492 0.90339 0.88537 0.90982 0.86081 0.86451 0.90212 0.86743 0.85698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.28 13.96 21.45 0.30 -57.98 16 2 C 0.01 0.83 5.47 84.65 0.46 1.29 16 3 Si 0.96 41.15 27.47 68.60 1.88 43.04 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.23 -8.62 6.54 99.48 0.65 -7.97 16 6 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.55 -31.92 9.79 25.60 0.25 -31.67 16 8 H 0.03 1.86 8.06 -2.91 -0.02 1.83 16 9 C 0.24 11.24 5.33 85.63 0.46 11.70 16 10 N -0.34 -15.80 3.67 -351.85 -1.29 -17.09 16 11 C 0.06 2.44 11.43 83.52 0.96 3.40 16 12 C -0.30 -12.08 9.61 22.11 0.21 -11.86 16 13 C 0.27 11.04 8.11 133.33 1.08 12.12 16 14 N -0.62 -19.57 5.45 -307.52 -1.68 -21.24 16 15 C 0.50 15.42 7.87 87.66 0.69 16.11 16 16 O -0.54 -21.01 13.56 -3.04 -0.04 -21.05 16 17 C 0.15 3.27 6.87 85.64 0.59 3.86 16 18 N -0.45 -11.80 3.12 -481.99 -1.50 -13.31 16 19 N -0.30 -7.07 12.51 -49.11 -0.61 -7.68 16 20 C 0.29 5.03 7.73 137.76 1.06 6.10 16 21 N -0.55 -11.30 3.13 -644.27 -2.02 -13.32 16 22 C 0.64 18.64 8.64 179.10 1.55 20.19 16 23 O -0.60 -21.39 17.83 -4.70 -0.08 -21.48 16 24 C 0.12 1.40 6.88 86.43 0.59 1.99 16 25 C -0.13 -0.49 5.94 30.77 0.18 -0.30 16 26 C -0.12 -0.12 5.96 30.83 0.18 0.07 16 27 C -0.04 -0.25 6.32 30.14 0.19 -0.06 16 28 N -0.34 -16.29 12.42 -54.45 -0.68 -16.97 16 29 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 30 H 0.08 3.41 7.12 -2.39 -0.02 3.39 16 31 H 0.05 2.05 7.57 -2.39 -0.02 2.04 16 32 H 0.21 6.06 8.06 -2.91 -0.02 6.04 16 33 H 0.16 6.49 5.92 -2.91 -0.02 6.47 16 34 H 0.43 10.44 8.82 -92.71 -0.82 9.62 16 35 H 0.15 2.56 8.12 -2.39 -0.02 2.54 16 36 H 0.17 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.10 0.84 8.14 -2.38 -0.02 0.83 16 39 H 0.07 0.41 8.10 -2.39 -0.02 0.39 16 40 H 0.12 -0.16 8.14 -2.39 -0.02 -0.18 16 41 H 0.12 -0.45 8.14 -2.38 -0.02 -0.47 16 42 H 0.08 0.06 8.11 -2.39 -0.02 0.05 16 43 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 Total: -1.00 -94.99 374.98 2.92 -92.06 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 0.18 Total: 22.09 kcal Atomic # 6 Polarization: 24.47 SS G_CDS: 8.46 Total: 32.93 kcal Atomic # 7 Polarization: -140.11 SS G_CDS: -7.48 Total: -147.59 kcal Atomic # 8 Polarization: -42.40 SS G_CDS: -0.13 Total: -42.53 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 1.88 Total: 43.04 kcal Total: -94.99 2.92 -92.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593064546.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.163 kcal (2) G-P(sol) polarization free energy of solvation -94.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds