Wall clock time and date at job start Sat Apr 11 2020 07:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86791 * 120.00103 * 2 1 4 4 H 1.48498 * 109.47285 * 359.97438 * 3 2 1 5 5 H 1.48504 * 109.47176 * 119.99745 * 3 2 1 6 6 H 1.48501 * 109.47287 * 239.99978 * 3 2 1 7 7 C 1.37881 * 119.99860 * 179.71934 * 2 1 3 8 8 H 1.07997 * 119.99949 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99986 * 0.02562 * 7 2 1 10 10 N 1.46894 * 109.46916 * 179.97438 * 9 7 2 11 11 C 1.46962 * 111.00322 * 293.79592 * 10 9 7 12 12 C 1.53049 * 109.36509 * 176.81411 * 11 10 9 13 13 N 1.46952 * 109.36456 * 58.40193 * 12 11 10 14 14 C 1.46901 * 110.99901 * 176.80960 * 13 12 11 15 15 C 1.52995 * 109.47176 * 199.50733 * 14 13 12 16 16 O 1.42898 * 109.47258 * 64.64347 * 15 14 13 17 17 C 1.42898 * 113.99746 * 180.02562 * 16 15 14 18 18 C 1.53005 * 109.47006 * 180.02562 * 17 16 15 19 19 F 1.39900 * 109.47284 * 180.02562 * 18 17 16 20 20 F 1.39906 * 109.46776 * 299.99931 * 18 17 16 21 21 C 1.52993 * 109.47176 * 59.99677 * 18 17 16 22 22 F 1.39898 * 109.47173 * 60.00188 * 21 18 17 23 23 F 1.39903 * 109.47055 * 180.02562 * 21 18 17 24 24 F 1.39900 * 109.47317 * 300.00351 * 21 18 17 25 25 C 1.46956 * 110.88190 * 300.67507 * 13 12 11 26 26 C 1.46956 * 111.00206 * 169.99790 * 10 9 7 27 27 H 0.96996 * 120.00103 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46691 * 299.99492 * 9 7 2 29 29 H 1.09001 * 109.47323 * 59.99606 * 9 7 2 30 30 H 1.08997 * 109.48754 * 296.78417 * 11 10 9 31 31 H 1.09001 * 109.48489 * 56.84147 * 11 10 9 32 32 H 1.09002 * 109.49010 * 298.42937 * 12 11 10 33 33 H 1.09003 * 109.48567 * 178.36728 * 12 11 10 34 34 H 1.09007 * 109.47139 * 319.50823 * 14 13 12 35 35 H 1.09005 * 109.47049 * 79.50284 * 14 13 12 36 36 H 1.09002 * 109.47189 * 184.64481 * 15 14 13 37 37 H 1.09003 * 109.47320 * 304.63645 * 15 14 13 38 38 H 1.08997 * 109.47335 * 299.99354 * 17 16 15 39 39 H 1.08996 * 109.47645 * 59.99865 * 17 16 15 40 40 H 1.09000 * 109.49057 * 299.35907 * 25 13 12 41 41 H 1.08997 * 109.49149 * 179.28724 * 25 13 12 42 42 H 1.09007 * 109.48764 * 303.15866 * 26 10 9 43 43 H 1.09002 * 109.49051 * 63.21649 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1029 1.6963 1.2126 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1941 0.0063 9 6 1.2510 -2.4992 0.0117 10 7 2.2055 -3.6157 0.0166 11 6 2.9686 -3.6619 -1.2385 12 6 4.0040 -4.7863 -1.1618 13 7 3.3193 -6.0635 -0.9179 14 6 4.2738 -7.1801 -0.9129 15 6 3.5239 -8.4932 -1.1453 16 8 2.9455 -8.4867 -2.4520 17 6 2.2179 -9.6744 -2.7714 18 6 1.6467 -9.5576 -4.1860 19 9 0.9338 -10.7200 -4.4985 20 9 0.7900 -8.4535 -4.2532 21 6 2.7913 -9.3765 -5.1848 22 9 3.6480 -10.4805 -5.1176 23 9 2.2689 -9.2691 -6.4782 24 9 3.5037 -8.2138 -4.8721 25 6 2.5563 -6.0174 0.3373 26 6 1.5209 -4.8929 0.2606 27 1 -0.4850 -0.8400 -0.0004 28 1 0.6240 -2.5527 0.9018 29 1 0.6246 -2.5611 -0.8782 30 1 2.2894 -3.8490 -2.0703 31 1 3.4764 -2.7095 -1.3906 32 1 4.6997 -4.5852 -0.3471 33 1 4.5516 -4.8412 -2.1028 34 1 5.0069 -7.0350 -1.7065 35 1 4.7835 -7.2181 0.0499 36 1 4.2188 -9.3286 -1.0597 37 1 2.7358 -8.5985 -0.3996 38 1 2.8854 -10.5345 -2.7195 39 1 1.4027 -9.8036 -2.0595 40 1 3.2355 -5.8302 1.1690 41 1 2.0484 -6.9697 0.4893 42 1 0.9732 -4.8380 1.2015 43 1 0.8252 -5.0941 -0.5541 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615793192.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:47:12 Heat of formation + Delta-G solvation = -275.265597 kcal Electronic energy + Delta-G solvation = -32161.424078 eV Core-core repulsion = 26884.147432 eV Total energy + Delta-G solvation = -5277.276646 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.97954 -49.59391 -48.54462 -48.17328 -47.54982 -39.19150 -38.17024 -35.32581 -32.84805 -31.95342 -30.52789 -29.74791 -27.13160 -26.49960 -24.65485 -23.03906 -22.86711 -22.26010 -21.35120 -19.63810 -19.47831 -19.27041 -19.11667 -17.93235 -17.31634 -16.83772 -16.70803 -16.44995 -15.52467 -15.32956 -15.02655 -14.90031 -14.88291 -14.68381 -14.57807 -14.53930 -14.36023 -14.23992 -14.20414 -14.18169 -13.96370 -13.73886 -13.62492 -13.47898 -12.90533 -12.86193 -12.21796 -11.98322 -11.74548 -11.59862 -11.42747 -11.11388 -10.97071 -10.81498 -10.62512 -10.31319 -10.16787 -10.09994 -9.95089 -8.65197 -8.35676 -8.16072 -7.30372 -6.34734 -4.03452 1.41867 2.33761 2.77593 3.01602 3.08438 3.45781 3.48088 3.54095 3.66658 3.87362 3.94179 4.08341 4.51417 4.53767 4.56772 4.80584 4.83621 4.88791 5.07992 5.25033 5.33716 5.40836 5.49381 5.58086 5.69400 5.78454 5.86438 6.01029 6.12663 6.34807 6.50398 6.54874 6.65759 6.99712 7.10459 7.19174 7.26724 7.81930 8.01413 8.34654 8.60105 8.89215 9.67401 11.04496 Molecular weight = 346.14amu Principal moments of inertia in cm(-1) A = 0.017345 B = 0.002433 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.886593 B =11505.908884 C =11915.550086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.013 3.987 3 Si 1.072 2.928 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.588 4.588 8 H 0.056 0.944 9 C 0.184 3.816 10 N -0.532 5.532 11 C 0.068 3.932 12 C 0.061 3.939 13 N -0.531 5.531 14 C 0.055 3.945 15 C 0.072 3.928 16 O -0.351 6.351 17 C 0.017 3.983 18 C 0.270 3.730 19 F -0.160 7.160 20 F -0.150 7.150 21 C 0.429 3.571 22 F -0.164 7.164 23 F -0.166 7.166 24 F -0.137 7.137 25 C 0.061 3.939 26 C 0.055 3.945 27 H 0.267 0.733 28 H 0.019 0.981 29 H -0.019 1.019 30 H 0.029 0.971 31 H 0.087 0.913 32 H 0.038 0.962 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.038 0.962 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.653 -25.676 -6.423 27.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.190 4.190 3 Si 0.901 3.099 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.626 4.626 8 H 0.074 0.926 9 C 0.058 3.942 10 N -0.257 5.257 11 C -0.060 4.060 12 C -0.067 4.067 13 N -0.257 5.257 14 C -0.073 4.073 15 C -0.004 4.004 16 O -0.270 6.270 17 C -0.061 4.061 18 C 0.231 3.769 19 F -0.141 7.141 20 F -0.130 7.130 21 C 0.373 3.627 22 F -0.145 7.145 23 F -0.147 7.147 24 F -0.118 7.118 25 C -0.067 4.067 26 C -0.074 4.074 27 H 0.077 0.923 28 H 0.037 0.963 29 H -0.001 1.001 30 H 0.047 0.953 31 H 0.105 0.895 32 H 0.056 0.944 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.110 0.890 39 H 0.115 0.885 40 H 0.057 0.943 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 7.463 -23.844 -6.578 25.836 hybrid contribution 0.021 -1.994 -0.076 1.995 sum 7.483 -25.838 -6.654 27.710 Atomic orbital electron populations 1.70790 1.06899 1.30410 1.46997 1.25853 0.96498 1.02707 0.93952 0.83492 0.74797 0.75146 0.76510 1.20853 1.21422 1.21460 1.21959 0.94727 0.90987 1.54973 0.92557 1.19796 0.90694 0.88933 0.94775 1.62202 1.27627 1.02389 1.33519 1.21986 0.95489 0.97545 0.91003 1.22235 0.95991 0.88355 1.00088 1.62110 1.25688 1.03216 1.34637 1.22092 0.94156 0.90033 1.01032 1.22692 0.96582 0.97926 0.83224 1.88100 1.69673 1.34938 1.34270 1.23304 0.99244 0.92042 0.91503 1.21664 0.84536 0.74685 0.96016 1.93159 1.79309 1.47915 1.93714 1.93230 1.70794 1.51994 1.96992 1.20798 0.84303 0.76131 0.81459 1.93248 1.71847 1.53274 1.96168 1.93282 1.86214 1.95776 1.39437 1.93377 1.78752 1.47407 1.92306 1.22192 0.96295 0.98295 0.89964 1.22069 0.94895 0.90116 1.00299 0.92315 0.96308 1.00120 0.95251 0.89475 0.94402 0.90936 0.89883 0.92723 0.92532 0.92493 0.88982 0.88463 0.94330 0.91438 0.91244 0.95113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.22 13.65 55.43 0.76 -27.47 16 2 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 3 Si 1.07 25.51 29.90 -169.99 -5.08 20.43 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.59 -16.85 8.47 -34.44 -0.29 -17.15 16 8 H 0.06 1.61 7.13 -52.49 -0.37 1.23 16 9 C 0.18 4.86 4.03 -4.98 -0.02 4.84 16 10 N -0.53 -11.78 4.70 -235.90 -1.11 -12.89 16 11 C 0.07 1.38 5.43 -3.76 -0.02 1.36 16 12 C 0.06 0.97 5.57 -3.77 -0.02 0.95 16 13 N -0.53 -7.63 4.58 -234.47 -1.07 -8.70 16 14 C 0.06 0.58 5.39 -3.83 -0.02 0.56 16 15 C 0.07 0.61 6.13 37.16 0.23 0.84 16 16 O -0.35 -3.65 8.44 -35.23 -0.30 -3.95 16 17 C 0.02 0.13 5.46 37.16 0.20 0.34 16 18 C 0.27 2.55 1.77 -26.73 -0.05 2.51 16 19 F -0.16 -1.42 17.02 2.25 0.04 -1.38 16 20 F -0.15 -1.81 16.96 2.25 0.04 -1.78 16 21 C 0.43 4.29 2.65 37.15 0.10 4.39 16 22 F -0.16 -1.45 16.78 2.25 0.04 -1.41 16 23 F -0.17 -1.79 17.28 2.25 0.04 -1.75 16 24 F -0.14 -1.61 15.53 2.25 0.03 -1.57 16 25 C 0.06 0.88 5.43 -3.77 -0.02 0.86 16 26 C 0.06 1.02 5.61 -3.77 -0.02 1.00 16 27 H 0.27 8.22 7.22 -40.82 -0.29 7.93 16 28 H 0.02 0.52 7.90 -51.93 -0.41 0.11 16 29 H -0.02 -0.53 7.98 -51.93 -0.41 -0.95 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 1.89 6.79 -51.93 -0.35 1.54 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 1.04 8.00 -51.93 -0.42 0.63 16 34 H 0.08 0.86 7.85 -51.93 -0.41 0.45 16 35 H 0.05 0.51 8.00 -51.93 -0.42 0.09 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.06 0.46 6.74 -51.93 -0.35 0.11 16 38 H 0.09 0.46 7.80 -51.93 -0.41 0.05 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.82 6.72 -51.93 -0.35 0.47 16 42 H 0.07 1.24 8.07 -51.92 -0.42 0.82 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 366.60 15.07 5.52 5.52 Total: -1.00 -32.42 366.60 -7.06 -39.48 By element: Atomic # 1 Polarization: 0.61 SS G_CDS: -5.94 Total: -5.33 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -0.03 Total: 0.79 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: -1.43 Total: -49.06 kcal Atomic # 8 Polarization: -3.65 SS G_CDS: -0.30 Total: -3.95 kcal Atomic # 9 Polarization: -8.08 SS G_CDS: 0.19 Total: -7.89 kcal Atomic # 14 Polarization: 25.51 SS G_CDS: -5.08 Total: 20.43 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.42 -7.06 -39.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615793192.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -235.782 kcal (2) G-P(sol) polarization free energy of solvation -32.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -268.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -275.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds