Wall clock time and date at job start Sat Apr 11 2020 07:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86791 * 120.00103 * 2 1 4 4 H 1.48498 * 109.47285 * 359.97438 * 3 2 1 5 5 H 1.48504 * 109.47176 * 119.99745 * 3 2 1 6 6 H 1.48501 * 109.47287 * 239.99978 * 3 2 1 7 7 C 1.37881 * 119.99860 * 179.71934 * 2 1 3 8 8 H 1.07997 * 119.99949 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99986 * 0.02562 * 7 2 1 10 10 N 1.46894 * 109.46916 * 179.97438 * 9 7 2 11 11 C 1.46962 * 111.00322 * 293.79592 * 10 9 7 12 12 C 1.53049 * 109.36509 * 176.81411 * 11 10 9 13 13 N 1.46952 * 109.36456 * 58.40193 * 12 11 10 14 14 C 1.46901 * 110.99901 * 176.80960 * 13 12 11 15 15 C 1.52995 * 109.47176 * 199.50733 * 14 13 12 16 16 O 1.42898 * 109.47258 * 64.64347 * 15 14 13 17 17 C 1.42898 * 113.99746 * 180.02562 * 16 15 14 18 18 C 1.53005 * 109.47006 * 180.02562 * 17 16 15 19 19 F 1.39900 * 109.47284 * 180.02562 * 18 17 16 20 20 F 1.39906 * 109.46776 * 299.99931 * 18 17 16 21 21 C 1.52993 * 109.47176 * 59.99677 * 18 17 16 22 22 F 1.39898 * 109.47173 * 60.00188 * 21 18 17 23 23 F 1.39903 * 109.47055 * 180.02562 * 21 18 17 24 24 F 1.39900 * 109.47317 * 300.00351 * 21 18 17 25 25 C 1.46956 * 110.88190 * 300.67507 * 13 12 11 26 26 C 1.46956 * 111.00206 * 169.99790 * 10 9 7 27 27 H 0.96996 * 120.00103 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46691 * 299.99492 * 9 7 2 29 29 H 1.09001 * 109.47323 * 59.99606 * 9 7 2 30 30 H 1.08997 * 109.48754 * 296.78417 * 11 10 9 31 31 H 1.09001 * 109.48489 * 56.84147 * 11 10 9 32 32 H 1.09002 * 109.49010 * 298.42937 * 12 11 10 33 33 H 1.09003 * 109.48567 * 178.36728 * 12 11 10 34 34 H 1.09007 * 109.47139 * 319.50823 * 14 13 12 35 35 H 1.09005 * 109.47049 * 79.50284 * 14 13 12 36 36 H 1.09002 * 109.47189 * 184.64481 * 15 14 13 37 37 H 1.09003 * 109.47320 * 304.63645 * 15 14 13 38 38 H 1.08997 * 109.47335 * 299.99354 * 17 16 15 39 39 H 1.08996 * 109.47645 * 59.99865 * 17 16 15 40 40 H 1.09000 * 109.49057 * 299.35907 * 25 13 12 41 41 H 1.08997 * 109.49149 * 179.28724 * 25 13 12 42 42 H 1.09007 * 109.48764 * 303.15866 * 26 10 9 43 43 H 1.09002 * 109.49051 * 63.21649 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1029 1.6963 1.2126 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1941 0.0063 9 6 1.2510 -2.4992 0.0117 10 7 2.2055 -3.6157 0.0166 11 6 2.9686 -3.6619 -1.2385 12 6 4.0040 -4.7863 -1.1618 13 7 3.3193 -6.0635 -0.9179 14 6 4.2738 -7.1801 -0.9129 15 6 3.5239 -8.4932 -1.1453 16 8 2.9455 -8.4867 -2.4520 17 6 2.2179 -9.6744 -2.7714 18 6 1.6467 -9.5576 -4.1860 19 9 0.9338 -10.7200 -4.4985 20 9 0.7900 -8.4535 -4.2532 21 6 2.7913 -9.3765 -5.1848 22 9 3.6480 -10.4805 -5.1176 23 9 2.2689 -9.2691 -6.4782 24 9 3.5037 -8.2138 -4.8721 25 6 2.5563 -6.0174 0.3373 26 6 1.5209 -4.8929 0.2606 27 1 -0.4850 -0.8400 -0.0004 28 1 0.6240 -2.5527 0.9018 29 1 0.6246 -2.5611 -0.8782 30 1 2.2894 -3.8490 -2.0703 31 1 3.4764 -2.7095 -1.3906 32 1 4.6997 -4.5852 -0.3471 33 1 4.5516 -4.8412 -2.1028 34 1 5.0069 -7.0350 -1.7065 35 1 4.7835 -7.2181 0.0499 36 1 4.2188 -9.3286 -1.0597 37 1 2.7358 -8.5985 -0.3996 38 1 2.8854 -10.5345 -2.7195 39 1 1.4027 -9.8036 -2.0595 40 1 3.2355 -5.8302 1.1690 41 1 2.0484 -6.9697 0.4893 42 1 0.9732 -4.8380 1.2015 43 1 0.8252 -5.0941 -0.5541 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615793192.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:47:11 Heat of formation + Delta-G solvation = -298.142561 kcal Electronic energy + Delta-G solvation = -32162.416097 eV Core-core repulsion = 26884.147432 eV Total energy + Delta-G solvation = -5278.268665 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.75758 -50.35693 -49.31600 -48.99065 -48.33432 -40.36194 -39.07318 -36.83662 -34.81397 -32.81437 -31.92254 -30.88407 -28.59895 -27.39933 -26.29363 -24.47332 -23.92603 -23.58322 -22.55970 -20.73119 -20.37675 -20.23004 -19.89216 -18.94564 -18.66608 -18.03800 -17.63072 -17.24687 -16.65605 -16.17180 -16.07745 -15.86587 -15.80846 -15.69946 -15.65478 -15.62302 -15.50609 -15.42317 -15.35041 -15.08042 -15.04261 -15.00201 -14.97425 -14.57183 -14.01338 -13.81074 -13.68670 -13.28442 -13.13693 -12.92217 -12.71239 -12.54348 -12.36709 -12.24042 -12.21748 -11.93156 -11.68694 -11.52221 -10.77517 -10.73663 -10.58886 -9.30085 -9.13117 -8.70141 -6.40810 0.68141 1.52954 1.61931 1.71097 1.81394 2.01216 2.28375 2.36275 2.55577 2.85152 2.91379 3.10606 3.14248 3.18867 3.40920 3.92038 3.99340 4.03010 4.10710 4.14020 4.26551 4.33061 4.40078 4.43470 4.50119 4.60394 4.63813 4.75807 4.81430 4.88352 4.94381 4.95654 5.07064 5.12049 5.74037 5.87568 5.95832 6.04688 6.21957 6.36168 6.39398 6.61271 7.40364 8.68691 Molecular weight = 346.14amu Principal moments of inertia in cm(-1) A = 0.017345 B = 0.002433 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.886593 B =11505.908884 C =11915.550086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.039 4.039 3 Si 1.123 2.877 4 H -0.284 1.284 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.599 4.599 8 H 0.056 0.944 9 C 0.195 3.805 10 N -0.537 5.537 11 C 0.070 3.930 12 C 0.075 3.925 13 N -0.546 5.546 14 C 0.053 3.947 15 C 0.071 3.929 16 O -0.381 6.381 17 C 0.018 3.982 18 C 0.267 3.733 19 F -0.157 7.157 20 F -0.170 7.170 21 C 0.428 3.572 22 F -0.155 7.155 23 F -0.175 7.175 24 F -0.149 7.149 25 C 0.073 3.927 26 C 0.052 3.948 27 H 0.252 0.748 28 H -0.001 1.001 29 H -0.050 1.050 30 H 0.008 0.992 31 H 0.065 0.935 32 H 0.041 0.959 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.124 0.876 39 H 0.114 0.886 40 H 0.042 0.958 41 H 0.100 0.900 42 H 0.070 0.930 43 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.727 -27.551 -5.746 29.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.236 4.236 3 Si 0.943 3.057 4 H -0.209 1.209 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.637 4.637 8 H 0.074 0.926 9 C 0.068 3.932 10 N -0.262 5.262 11 C -0.058 4.058 12 C -0.053 4.053 13 N -0.271 5.271 14 C -0.074 4.074 15 C -0.004 4.004 16 O -0.301 6.301 17 C -0.059 4.059 18 C 0.229 3.771 19 F -0.138 7.138 20 F -0.151 7.151 21 C 0.373 3.627 22 F -0.136 7.136 23 F -0.156 7.156 24 F -0.130 7.130 25 C -0.055 4.055 26 C -0.077 4.077 27 H 0.061 0.939 28 H 0.017 0.983 29 H -0.032 1.032 30 H 0.026 0.974 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.082 0.918 38 H 0.141 0.859 39 H 0.132 0.868 40 H 0.061 0.939 41 H 0.118 0.882 42 H 0.088 0.912 43 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 9.553 -25.779 -5.901 28.118 hybrid contribution -0.646 -1.514 -0.328 1.679 sum 8.908 -27.293 -6.229 29.378 Atomic orbital electron populations 1.70926 1.07998 1.29573 1.49050 1.27491 0.96513 1.06836 0.92726 0.82872 0.74028 0.70717 0.78084 1.20896 1.19282 1.19365 1.22271 0.94869 0.92091 1.54442 0.92565 1.19505 0.90786 0.90552 0.92338 1.62163 1.26756 1.02852 1.34448 1.21965 0.95766 0.98705 0.89396 1.22035 0.94323 0.87782 1.01197 1.62084 1.27035 1.03434 1.34546 1.22235 0.93721 0.89260 1.02161 1.22791 0.97343 0.97682 0.82629 1.88053 1.70275 1.36478 1.35248 1.23491 1.00247 0.92143 0.90066 1.21913 0.83952 0.74084 0.97176 1.93163 1.79241 1.47530 1.93828 1.93187 1.71507 1.53229 1.97157 1.20917 0.84593 0.75966 0.81269 1.93261 1.71602 1.52648 1.96105 1.93263 1.86344 1.95824 1.40174 1.93349 1.79066 1.48201 1.92370 1.22100 0.95412 0.97741 0.90289 1.22207 0.96067 0.89792 0.99626 0.93875 0.98251 1.03212 0.97380 0.91662 0.94061 0.89236 0.89712 0.90834 0.89139 0.91775 0.85872 0.86829 0.93943 0.88179 0.91163 0.96640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.54 13.65 21.45 0.29 -59.25 16 2 C -0.04 -2.28 5.46 84.66 0.46 -1.82 16 3 Si 1.12 51.16 29.90 68.60 2.05 53.21 16 4 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 5 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 6 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 7 C -0.60 -35.21 8.47 25.60 0.22 -34.99 16 8 H 0.06 3.25 7.13 -2.91 -0.02 3.23 16 9 C 0.19 10.82 4.03 85.56 0.34 11.16 16 10 N -0.54 -24.36 4.70 -900.27 -4.23 -28.59 16 11 C 0.07 2.91 5.43 86.31 0.47 3.38 16 12 C 0.07 2.28 5.57 86.31 0.48 2.76 16 13 N -0.55 -14.46 4.58 -895.72 -4.11 -18.56 16 14 C 0.05 0.93 5.39 86.30 0.46 1.39 16 15 C 0.07 0.91 6.13 71.98 0.44 1.36 16 16 O -0.38 -6.82 8.44 -148.98 -1.26 -8.08 16 17 C 0.02 0.22 5.46 71.98 0.39 0.61 16 18 C 0.27 4.67 1.77 30.59 0.05 4.72 16 19 F -0.16 -2.54 17.02 44.97 0.77 -1.77 16 20 F -0.17 -4.07 16.96 44.97 0.76 -3.31 16 21 C 0.43 8.08 2.65 71.98 0.19 8.27 16 22 F -0.15 -2.43 16.78 44.97 0.75 -1.67 16 23 F -0.17 -3.71 17.28 44.97 0.78 -2.93 16 24 F -0.15 -3.35 15.53 44.97 0.70 -2.65 16 25 C 0.07 1.95 5.43 86.31 0.47 2.41 16 26 C 0.05 1.91 5.61 86.31 0.48 2.40 16 27 H 0.25 16.30 7.22 -92.71 -0.67 15.63 16 28 H 0.00 -0.03 7.90 -2.39 -0.02 -0.05 16 29 H -0.05 -3.00 7.98 -2.39 -0.02 -3.02 16 30 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.06 2.93 6.79 -2.39 -0.02 2.91 16 32 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.09 2.43 8.00 -2.39 -0.02 2.41 16 34 H 0.08 1.46 7.85 -2.38 -0.02 1.45 16 35 H 0.07 1.04 8.00 -2.38 -0.02 1.02 16 36 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.06 0.73 6.74 -2.39 -0.02 0.72 16 38 H 0.12 0.71 7.80 -2.39 -0.02 0.70 16 39 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.10 2.07 6.72 -2.39 -0.02 2.06 16 42 H 0.07 2.54 8.07 -2.38 -0.02 2.52 16 43 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -73.06 366.60 2.11 -70.95 By element: Atomic # 1 Polarization: -0.13 SS G_CDS: 1.13 Total: 1.00 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: 4.47 Total: 1.65 kcal Atomic # 7 Polarization: -98.35 SS G_CDS: -8.04 Total: -106.40 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -1.26 Total: -8.08 kcal Atomic # 9 Polarization: -16.09 SS G_CDS: 3.76 Total: -12.34 kcal Atomic # 14 Polarization: 51.16 SS G_CDS: 2.05 Total: 53.21 kcal Total: -73.06 2.11 -70.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615793192.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -227.193 kcal (2) G-P(sol) polarization free energy of solvation -73.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -300.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -298.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds