Wall clock time and date at job start Sat Apr 11 2020 07:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38259 * 119.94543 * 2 1 4 4 C 1.38104 * 120.09799 * 179.97438 * 3 2 1 5 5 C 1.38907 * 119.97553 * 359.74010 * 4 3 2 6 6 N 1.39928 * 120.05857 * 180.28137 * 5 4 3 7 7 C 1.46755 * 124.35257 * 174.86211 * 6 5 4 8 8 C 1.54482 * 105.47317 * 197.01868 * 7 6 5 9 9 H 1.09007 * 110.96923 * 216.42904 * 8 7 6 10 10 C 1.50700 * 110.97099 * 92.70340 * 8 7 6 11 11 O 1.21294 * 120.00013 * 359.97438 * 10 8 7 12 12 N 1.34777 * 120.00007 * 179.97438 * 10 8 7 13 13 C 1.37095 * 120.00094 * 179.97438 * 12 10 8 14 14 H 1.07998 * 120.00651 * 223.93524 * 13 12 10 15 15 C 1.38952 * 119.99475 * 43.94710 * 13 12 10 16 16 N 1.31408 * 120.00331 * 18.90519 * 15 13 12 17 17 Si 1.86799 * 119.99878 * 198.91219 * 15 13 12 18 18 H 1.48510 * 109.47165 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47666 * 119.99680 * 17 15 13 20 20 H 1.48499 * 109.47176 * 239.99686 * 17 15 13 21 21 C 1.46506 * 119.99912 * 0.02562 * 12 10 8 22 22 C 1.52999 * 117.49584 * 183.41227 * 21 12 10 23 23 C 1.53001 * 117.49554 * 114.75125 * 21 12 10 24 24 C 1.54623 * 101.76602 * 334.58055 * 8 7 6 25 25 C 1.34428 * 124.34628 * 354.56522 * 6 5 4 26 26 O 1.21288 * 124.93997 * 359.57247 * 25 6 5 27 27 C 1.38812 * 119.88677 * 0.50924 * 5 4 3 28 28 C 1.38345 * 119.90298 * 359.49223 * 27 5 4 29 29 F 1.35099 * 119.99111 * 180.27278 * 28 27 5 30 30 H 1.09000 * 109.47219 * 270.02223 * 1 2 3 31 31 H 1.09004 * 109.47127 * 30.02786 * 1 2 3 32 32 H 1.09005 * 109.47294 * 150.02573 * 1 2 3 33 33 H 1.08002 * 119.95204 * 359.97438 * 3 2 1 34 34 H 1.07997 * 120.01171 * 179.97438 * 4 3 2 35 35 H 1.09004 * 110.24590 * 316.01641 * 7 6 5 36 36 H 1.09002 * 110.24696 * 77.93010 * 7 6 5 37 37 H 0.97002 * 119.99870 * 184.60305 * 16 15 13 38 38 H 1.08993 * 115.55042 * 329.08293 * 21 12 10 39 39 H 1.08998 * 117.50390 * 359.97438 * 22 21 12 40 40 H 1.09004 * 117.49738 * 145.02369 * 22 21 12 41 41 H 1.09003 * 117.49526 * 214.97429 * 23 21 12 42 42 H 1.08993 * 117.50489 * 0.02562 * 23 21 12 43 43 H 1.09003 * 110.48893 * 143.47122 * 24 8 7 44 44 H 1.09001 * 110.49154 * 266.12220 * 24 8 7 45 45 H 1.08000 * 120.04722 * 179.76631 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1980 0.0000 4 6 3.5782 1.2017 0.0005 5 6 4.2754 0.0003 0.0065 6 7 5.6747 0.0020 0.0130 7 6 6.5037 -1.2034 0.1281 8 6 7.9092 -0.7006 0.5261 9 1 8.6866 -1.2989 0.0508 10 6 8.0762 -0.6957 2.0238 11 8 7.1645 -1.0582 2.7369 12 7 9.2387 -0.2885 2.5708 13 6 9.3905 -0.2836 3.9334 14 1 9.8542 0.5605 4.4221 15 6 8.9480 -1.3649 4.6855 16 7 8.7332 -2.5245 4.1060 17 14 8.6582 -1.1699 6.5206 18 1 8.9714 0.2240 6.9259 19 1 7.2373 -1.4689 6.8319 20 1 9.5359 -2.1099 7.2630 21 6 10.3398 0.1498 1.7095 22 6 11.6600 0.5240 2.3861 23 6 10.7644 1.6171 1.7976 24 6 7.8988 0.7405 -0.0343 25 6 6.4322 1.1076 -0.0911 26 8 6.0024 2.2355 -0.2105 27 6 3.5817 -1.2020 0.0013 28 6 2.1982 -1.2001 0.0007 29 9 1.5213 -2.3693 0.0012 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8898 -0.5143 32 1 -0.3634 -0.8902 -0.5135 33 1 1.6555 2.1324 -0.0004 34 1 4.1159 2.1383 0.0001 35 1 6.1063 -1.8623 0.9003 36 1 6.5451 -1.7255 -0.8278 37 1 8.3611 -3.2605 4.6168 38 1 10.3934 -0.3319 0.7333 39 1 11.7093 0.4444 3.4721 40 1 12.5823 0.2888 1.8548 41 1 11.0979 2.1005 0.8793 42 1 10.2250 2.2561 2.4966 43 1 8.4376 1.4133 0.6330 44 1 8.3330 0.7644 -1.0338 45 1 4.1212 -2.1376 0.0021 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000743887163.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:47:17 Heat of formation + Delta-G solvation = -39.375256 kcal Electronic energy + Delta-G solvation = -31018.158378 eV Core-core repulsion = 26723.736670 eV Total energy + Delta-G solvation = -4294.421708 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.86882 -41.11594 -38.99489 -38.27431 -36.65623 -35.80197 -33.71606 -32.83990 -31.30145 -30.66401 -30.39863 -27.56127 -26.61873 -25.30542 -23.42220 -22.36191 -21.97295 -21.79343 -21.04882 -19.84833 -19.12775 -17.85027 -17.37442 -16.37545 -16.21352 -16.01290 -15.74834 -15.63133 -15.38651 -14.83591 -14.60352 -14.39786 -14.06155 -13.84532 -13.69429 -13.52610 -13.41342 -13.25439 -13.08150 -12.94673 -12.47314 -12.21201 -12.14396 -11.91134 -11.69287 -11.58826 -11.29812 -11.15020 -11.05043 -10.92732 -10.90048 -10.64579 -10.22623 -10.07307 -9.90768 -9.84364 -9.54881 -8.81197 -8.80348 -8.19115 -7.79086 -7.19453 -6.20738 -3.99317 1.14244 1.23789 2.63224 2.87419 3.25767 3.36145 3.37402 3.70487 3.83942 4.14302 4.26350 4.40445 4.52671 4.55944 4.75017 4.79680 4.85026 5.04046 5.07410 5.12098 5.23126 5.34555 5.43578 5.47657 5.50980 5.54768 5.60364 5.62205 5.70699 5.76159 5.82639 5.88947 5.92379 6.08912 6.12562 6.14083 6.15749 6.21400 6.35616 6.44139 6.57392 6.63760 6.84067 7.05486 7.13631 7.53356 8.12228 8.15232 8.93032 8.99971 9.52736 10.10597 10.86317 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.012298 B = 0.003610 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.318102 B = 7754.150810 C = 9016.699820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.155 4.155 3 C -0.065 4.065 4 C -0.166 4.166 5 C 0.205 3.795 6 N -0.549 5.549 7 C 0.109 3.891 8 C -0.117 4.117 9 H 0.112 0.888 10 C 0.487 3.513 11 O -0.524 6.524 12 N -0.422 5.422 13 C -0.346 4.346 14 H 0.079 0.921 15 C 0.076 3.924 16 N -0.831 5.831 17 Si 0.906 3.094 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.285 1.285 21 C 0.071 3.929 22 C -0.172 4.172 23 C -0.209 4.209 24 C -0.143 4.143 25 C 0.525 3.475 26 O -0.516 6.516 27 C -0.189 4.189 28 C 0.124 3.876 29 F -0.138 7.138 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.134 0.866 34 H 0.161 0.839 35 H 0.107 0.893 36 H 0.080 0.920 37 H 0.264 0.736 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.118 0.882 44 H 0.110 0.890 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.400 3.476 -11.801 13.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.157 4.157 3 C -0.084 4.084 4 C -0.186 4.186 5 C 0.110 3.890 6 N -0.271 5.271 7 C -0.013 4.013 8 C -0.140 4.140 9 H 0.130 0.870 10 C 0.273 3.727 11 O -0.401 6.401 12 N -0.142 5.142 13 C -0.472 4.472 14 H 0.097 0.903 15 C -0.135 4.135 16 N -0.465 5.465 17 Si 0.733 3.267 18 H -0.195 1.195 19 H -0.206 1.206 20 H -0.211 1.211 21 C -0.035 4.035 22 C -0.209 4.209 23 C -0.248 4.248 24 C -0.183 4.183 25 C 0.316 3.684 26 O -0.392 6.392 27 C -0.211 4.211 28 C 0.104 3.896 29 F -0.116 7.116 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.152 0.848 34 H 0.178 0.822 35 H 0.125 0.875 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.110 0.890 43 H 0.136 0.864 44 H 0.128 0.872 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.094 3.605 -11.430 13.446 hybrid contribution -0.017 -0.479 0.908 1.027 sum -6.111 3.126 -10.522 12.563 Atomic orbital electron populations 1.20634 0.90374 1.02835 1.02490 1.19832 0.96892 0.91900 1.07088 1.20752 0.93275 0.96921 0.97410 1.21695 0.94415 0.98706 1.03826 1.17443 0.81650 0.93575 0.96336 1.45795 1.03488 1.09977 1.67810 1.22249 0.89733 0.86800 1.02526 1.22318 0.97193 0.96091 0.98371 0.86976 1.19322 0.83277 0.83005 0.87060 1.90560 1.40042 1.47690 1.61826 1.42688 1.07580 1.58973 1.04937 1.18911 1.45828 1.02478 0.80023 0.90302 1.25158 0.95620 0.93579 0.99130 1.69860 1.37840 1.00936 1.37841 0.86256 0.78225 0.78232 0.84028 1.19529 1.20611 1.21144 1.21759 0.90992 0.95086 0.95664 1.23093 0.93252 1.02524 1.02068 1.23381 1.05473 0.93231 1.02710 1.22427 0.93515 0.98084 1.04302 1.21120 0.89616 0.83579 0.74101 1.90575 1.78208 1.21499 1.48945 1.20648 0.92601 0.98312 1.09515 1.17092 0.89103 0.80881 1.02546 1.91468 1.80055 1.46234 1.93883 0.91188 0.91272 0.91558 0.84832 0.82212 0.87486 0.90178 0.92540 0.87851 0.87455 0.89677 0.89532 0.88999 0.86355 0.87162 0.84290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 9.83 36.00 0.35 -0.70 16 2 C -0.16 -2.01 5.89 -104.52 -0.62 -2.63 16 3 C -0.06 -0.84 9.69 -39.62 -0.38 -1.23 16 4 C -0.17 -2.60 9.29 -39.38 -0.37 -2.96 16 5 C 0.21 3.36 6.60 -83.70 -0.55 2.81 16 6 N -0.55 -9.11 3.14 -112.27 -0.35 -9.46 16 7 C 0.11 1.68 5.60 -3.13 -0.02 1.66 16 8 C -0.12 -1.91 2.58 -90.14 -0.23 -2.14 16 9 H 0.11 1.53 7.41 -51.92 -0.38 1.14 16 10 C 0.49 11.08 6.29 -10.99 -0.07 11.01 16 11 O -0.52 -14.26 13.28 5.55 0.07 -14.19 16 12 N -0.42 -9.63 2.83 -107.73 -0.30 -9.94 16 13 C -0.35 -8.95 7.93 -14.93 -0.12 -9.07 16 14 H 0.08 2.00 7.25 -52.49 -0.38 1.62 16 15 C 0.08 2.05 4.36 -17.47 -0.08 1.97 16 16 N -0.83 -23.39 11.76 55.50 0.65 -22.74 16 17 Si 0.91 21.41 29.60 -169.99 -5.03 16.38 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 21 C 0.07 1.26 4.63 -67.93 -0.31 0.94 16 22 C -0.17 -2.82 9.80 -26.69 -0.26 -3.08 16 23 C -0.21 -3.21 9.48 -26.69 -0.25 -3.46 16 24 C -0.14 -2.07 5.81 -26.74 -0.16 -2.23 16 25 C 0.53 8.98 7.92 -10.85 -0.09 8.90 16 26 O -0.52 -9.76 14.81 5.55 0.08 -9.68 16 27 C -0.19 -2.88 9.38 -39.33 -0.37 -3.25 16 28 C 0.12 1.79 7.24 -39.45 -0.29 1.50 16 29 F -0.14 -1.98 16.47 2.25 0.04 -1.94 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.55 8.08 -51.93 -0.42 0.14 16 32 H 0.07 0.64 7.63 -51.93 -0.40 0.24 16 33 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 34 H 0.16 2.68 5.25 -52.49 -0.28 2.40 16 35 H 0.11 1.92 6.56 -51.93 -0.34 1.58 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.10 1.55 6.82 -51.93 -0.35 1.20 16 39 H 0.11 2.00 6.72 -51.93 -0.35 1.65 16 40 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 43 H 0.12 1.86 6.00 -51.93 -0.31 1.55 16 44 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.14 1.97 7.00 -52.49 -0.37 1.60 16 LS Contribution 369.50 15.07 5.57 5.57 Total: -1.00 -32.68 369.50 -8.75 -41.43 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -5.67 Total: 6.52 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -3.80 Total: -1.96 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: 0.00 Total: -42.14 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: 0.16 Total: -23.87 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.68 -8.75 -41.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743887163.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.060 kcal (2) G-P(sol) polarization free energy of solvation -32.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds