Wall clock time and date at job start Sat Apr 11 2020 07:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38259 * 119.94543 * 2 1 4 4 C 1.38104 * 120.09799 * 179.97438 * 3 2 1 5 5 C 1.38907 * 119.97553 * 359.74010 * 4 3 2 6 6 N 1.39928 * 120.05857 * 180.28137 * 5 4 3 7 7 C 1.46755 * 124.35257 * 174.86211 * 6 5 4 8 8 C 1.54482 * 105.47317 * 197.01868 * 7 6 5 9 9 H 1.09007 * 110.96923 * 216.42904 * 8 7 6 10 10 C 1.50700 * 110.97099 * 92.70340 * 8 7 6 11 11 O 1.21294 * 120.00013 * 359.97438 * 10 8 7 12 12 N 1.34777 * 120.00007 * 179.97438 * 10 8 7 13 13 C 1.37095 * 120.00094 * 179.97438 * 12 10 8 14 14 H 1.07998 * 120.00651 * 223.93524 * 13 12 10 15 15 C 1.38952 * 119.99475 * 43.94710 * 13 12 10 16 16 N 1.31408 * 120.00331 * 18.90519 * 15 13 12 17 17 Si 1.86799 * 119.99878 * 198.91219 * 15 13 12 18 18 H 1.48510 * 109.47165 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47666 * 119.99680 * 17 15 13 20 20 H 1.48499 * 109.47176 * 239.99686 * 17 15 13 21 21 C 1.46506 * 119.99912 * 0.02562 * 12 10 8 22 22 C 1.52999 * 117.49584 * 183.41227 * 21 12 10 23 23 C 1.53001 * 117.49554 * 114.75125 * 21 12 10 24 24 C 1.54623 * 101.76602 * 334.58055 * 8 7 6 25 25 C 1.34428 * 124.34628 * 354.56522 * 6 5 4 26 26 O 1.21288 * 124.93997 * 359.57247 * 25 6 5 27 27 C 1.38812 * 119.88677 * 0.50924 * 5 4 3 28 28 C 1.38345 * 119.90298 * 359.49223 * 27 5 4 29 29 F 1.35099 * 119.99111 * 180.27278 * 28 27 5 30 30 H 1.09000 * 109.47219 * 270.02223 * 1 2 3 31 31 H 1.09004 * 109.47127 * 30.02786 * 1 2 3 32 32 H 1.09005 * 109.47294 * 150.02573 * 1 2 3 33 33 H 1.08002 * 119.95204 * 359.97438 * 3 2 1 34 34 H 1.07997 * 120.01171 * 179.97438 * 4 3 2 35 35 H 1.09004 * 110.24590 * 316.01641 * 7 6 5 36 36 H 1.09002 * 110.24696 * 77.93010 * 7 6 5 37 37 H 0.97002 * 119.99870 * 184.60305 * 16 15 13 38 38 H 1.08993 * 115.55042 * 329.08293 * 21 12 10 39 39 H 1.08998 * 117.50390 * 359.97438 * 22 21 12 40 40 H 1.09004 * 117.49738 * 145.02369 * 22 21 12 41 41 H 1.09003 * 117.49526 * 214.97429 * 23 21 12 42 42 H 1.08993 * 117.50489 * 0.02562 * 23 21 12 43 43 H 1.09003 * 110.48893 * 143.47122 * 24 8 7 44 44 H 1.09001 * 110.49154 * 266.12220 * 24 8 7 45 45 H 1.08000 * 120.04722 * 179.76631 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1980 0.0000 4 6 3.5782 1.2017 0.0005 5 6 4.2754 0.0003 0.0065 6 7 5.6747 0.0020 0.0130 7 6 6.5037 -1.2034 0.1281 8 6 7.9092 -0.7006 0.5261 9 1 8.6866 -1.2989 0.0508 10 6 8.0762 -0.6957 2.0238 11 8 7.1645 -1.0582 2.7369 12 7 9.2387 -0.2885 2.5708 13 6 9.3905 -0.2836 3.9334 14 1 9.8542 0.5605 4.4221 15 6 8.9480 -1.3649 4.6855 16 7 8.7332 -2.5245 4.1060 17 14 8.6582 -1.1699 6.5206 18 1 8.9714 0.2240 6.9259 19 1 7.2373 -1.4689 6.8319 20 1 9.5359 -2.1099 7.2630 21 6 10.3398 0.1498 1.7095 22 6 11.6600 0.5240 2.3861 23 6 10.7644 1.6171 1.7976 24 6 7.8988 0.7405 -0.0343 25 6 6.4322 1.1076 -0.0911 26 8 6.0024 2.2355 -0.2105 27 6 3.5817 -1.2020 0.0013 28 6 2.1982 -1.2001 0.0007 29 9 1.5213 -2.3693 0.0012 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8898 -0.5143 32 1 -0.3634 -0.8902 -0.5135 33 1 1.6555 2.1324 -0.0004 34 1 4.1159 2.1383 0.0001 35 1 6.1063 -1.8623 0.9003 36 1 6.5451 -1.7255 -0.8278 37 1 8.3611 -3.2605 4.6168 38 1 10.3934 -0.3319 0.7333 39 1 11.7093 0.4444 3.4721 40 1 12.5823 0.2888 1.8548 41 1 11.0979 2.1005 0.8793 42 1 10.2250 2.2561 2.4966 43 1 8.4376 1.4133 0.6330 44 1 8.3330 0.7644 -1.0338 45 1 4.1212 -2.1376 0.0021 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000743887163.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:47:16 Heat of formation + Delta-G solvation = -58.034992 kcal Electronic energy + Delta-G solvation = -31018.967525 eV Core-core repulsion = 26723.736670 eV Total energy + Delta-G solvation = -4295.230855 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.00133 -42.38090 -40.43853 -39.55231 -38.05012 -37.27113 -35.03222 -34.54338 -32.87557 -31.94825 -31.57430 -28.80135 -27.85363 -26.91191 -24.74975 -23.60725 -23.19534 -23.04150 -22.46792 -21.07835 -20.72053 -19.10376 -18.81683 -17.89047 -17.52750 -17.20327 -17.05645 -16.77971 -16.73532 -16.55672 -16.00725 -15.75266 -15.61241 -15.15021 -15.01523 -14.80150 -14.58455 -14.44782 -14.22844 -14.14625 -13.78896 -13.56920 -13.37293 -13.22775 -12.99296 -12.83940 -12.81751 -12.70893 -12.52647 -12.38206 -12.20921 -12.17262 -12.07422 -11.60745 -11.15505 -11.05605 -10.82913 -10.71566 -9.95042 -9.94403 -9.01637 -8.94994 -8.20657 -6.00261 0.00291 0.09748 1.32720 1.39305 1.40200 1.46393 1.70263 2.21480 2.35522 2.56680 2.96455 3.09813 3.13455 3.23927 3.30323 3.50021 3.71555 3.78187 3.83365 3.93158 4.04729 4.14941 4.19265 4.30570 4.36472 4.45260 4.49793 4.53312 4.62617 4.64374 4.75950 4.78634 4.89461 4.93289 4.96019 4.99248 5.02737 5.11613 5.18325 5.33612 5.35708 5.44417 5.48070 5.53632 5.90957 5.93710 6.18970 6.86285 7.02950 7.17732 7.70119 8.33314 8.83994 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.012298 B = 0.003610 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.318102 B = 7754.150810 C = 9016.699820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.149 4.149 3 C -0.059 4.059 4 C -0.181 4.181 5 C 0.179 3.821 6 N -0.553 5.553 7 C 0.111 3.889 8 C -0.106 4.106 9 H 0.150 0.850 10 C 0.473 3.527 11 O -0.583 6.583 12 N -0.440 5.440 13 C -0.350 4.350 14 H 0.073 0.927 15 C 0.030 3.970 16 N -0.862 5.862 17 Si 0.952 3.048 18 H -0.263 1.263 19 H -0.298 1.298 20 H -0.273 1.273 21 C 0.050 3.950 22 C -0.175 4.175 23 C -0.185 4.185 24 C -0.128 4.128 25 C 0.512 3.488 26 O -0.544 6.544 27 C -0.197 4.197 28 C 0.110 3.890 29 F -0.139 7.139 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.166 0.834 34 H 0.147 0.853 35 H 0.074 0.926 36 H 0.125 0.875 37 H 0.257 0.743 38 H 0.141 0.859 39 H 0.075 0.925 40 H 0.119 0.881 41 H 0.129 0.871 42 H 0.067 0.933 43 H 0.108 0.892 44 H 0.163 0.837 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.993 4.403 -14.203 15.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.151 4.151 3 C -0.077 4.077 4 C -0.202 4.202 5 C 0.084 3.916 6 N -0.275 5.275 7 C -0.011 4.011 8 C -0.128 4.128 9 H 0.168 0.832 10 C 0.262 3.738 11 O -0.464 6.464 12 N -0.159 5.159 13 C -0.478 4.478 14 H 0.091 0.909 15 C -0.177 4.177 16 N -0.498 5.498 17 Si 0.778 3.222 18 H -0.187 1.187 19 H -0.225 1.225 20 H -0.199 1.199 21 C -0.055 4.055 22 C -0.212 4.212 23 C -0.223 4.223 24 C -0.168 4.168 25 C 0.304 3.696 26 O -0.423 6.423 27 C -0.218 4.218 28 C 0.090 3.910 29 F -0.117 7.117 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.183 0.817 34 H 0.164 0.836 35 H 0.093 0.907 36 H 0.143 0.857 37 H 0.067 0.933 38 H 0.158 0.842 39 H 0.094 0.906 40 H 0.137 0.863 41 H 0.147 0.853 42 H 0.085 0.915 43 H 0.126 0.874 44 H 0.180 0.820 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.644 4.544 -13.835 15.617 hybrid contribution -0.198 -0.691 1.656 1.805 sum -5.842 3.853 -12.179 14.046 Atomic orbital electron populations 1.20733 0.87859 1.04270 1.03394 1.20219 0.98694 0.91097 1.05102 1.21087 0.92355 0.98347 0.95952 1.21746 0.95650 0.97952 1.04806 1.17686 0.81944 0.94204 0.97765 1.45917 1.03747 1.10254 1.67544 1.22323 0.88863 0.86218 1.03658 1.22241 0.98742 0.98237 0.93594 0.83243 1.20406 0.82355 0.81197 0.89835 1.90525 1.41890 1.49867 1.64099 1.42927 1.09402 1.58998 1.04612 1.19042 1.44718 1.01723 0.82320 0.90921 1.25796 0.96073 0.93693 1.02113 1.69932 1.39827 1.01363 1.38670 0.85542 0.77029 0.78688 0.80973 1.18666 1.22511 1.19894 1.22124 0.89912 0.97108 0.96347 1.23140 0.94303 1.03143 1.00641 1.23374 1.03637 0.91718 1.03581 1.22466 0.91684 0.95965 1.06671 1.21666 0.90880 0.83318 0.73731 1.90557 1.78881 1.22412 1.50436 1.20736 0.93180 0.98193 1.09717 1.17309 0.89075 0.81522 1.03077 1.91461 1.79950 1.46380 1.93940 0.90398 0.88802 0.91237 0.81690 0.83594 0.90750 0.85715 0.93321 0.84211 0.90632 0.86272 0.85254 0.91453 0.87371 0.81971 0.84038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.84 9.83 71.24 0.70 -1.14 16 2 C -0.15 -3.66 5.89 -19.80 -0.12 -3.78 16 3 C -0.06 -1.46 9.69 22.24 0.22 -1.25 16 4 C -0.18 -5.68 9.29 22.40 0.21 -5.47 16 5 C 0.18 5.93 6.60 38.15 0.25 6.18 16 6 N -0.55 -18.19 3.14 -627.70 -1.97 -20.16 16 7 C 0.11 3.31 5.60 86.83 0.49 3.80 16 8 C -0.11 -3.24 2.58 -10.48 -0.03 -3.27 16 9 H 0.15 3.44 7.41 -2.38 -0.02 3.42 16 10 C 0.47 21.65 6.29 87.66 0.55 22.21 16 11 O -0.58 -32.99 13.28 -3.07 -0.04 -33.03 16 12 N -0.44 -20.05 2.83 -613.12 -1.74 -21.79 16 13 C -0.35 -18.58 7.93 84.04 0.67 -17.91 16 14 H 0.07 3.82 7.25 -2.91 -0.02 3.80 16 15 C 0.03 1.66 4.36 84.93 0.37 2.03 16 16 N -0.86 -50.26 11.76 21.66 0.25 -50.01 16 17 Si 0.95 45.45 29.60 68.60 2.03 47.48 16 18 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 19 H -0.30 -14.97 7.11 99.48 0.71 -14.27 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 21 C 0.05 1.63 4.63 44.99 0.21 1.84 16 22 C -0.17 -5.36 9.80 30.62 0.30 -5.06 16 23 C -0.18 -5.14 9.48 30.62 0.29 -4.85 16 24 C -0.13 -3.34 5.81 30.59 0.18 -3.16 16 25 C 0.51 17.07 7.92 87.90 0.70 17.77 16 26 O -0.54 -20.56 14.81 -3.05 -0.05 -20.60 16 27 C -0.20 -6.06 9.38 22.43 0.21 -5.85 16 28 C 0.11 3.14 7.24 22.36 0.16 3.31 16 29 F -0.14 -3.91 16.47 44.97 0.74 -3.17 16 30 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.09 1.18 8.08 -2.39 -0.02 1.16 16 32 H 0.07 1.18 7.63 -2.38 -0.02 1.16 16 33 H 0.17 2.93 8.06 -2.91 -0.02 2.91 16 34 H 0.15 5.01 5.25 -2.91 -0.02 4.99 16 35 H 0.07 2.76 6.56 -2.38 -0.02 2.74 16 36 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 37 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 38 H 0.14 3.54 6.82 -2.39 -0.02 3.52 16 39 H 0.08 2.81 6.72 -2.39 -0.02 2.80 16 40 H 0.12 2.82 8.14 -2.38 -0.02 2.80 16 41 H 0.13 2.54 8.14 -2.39 -0.02 2.52 16 42 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.11 3.12 6.00 -2.39 -0.01 3.11 16 44 H 0.16 2.55 8.14 -2.39 -0.02 2.53 16 45 H 0.14 4.12 7.00 -2.91 -0.02 4.10 16 Total: -1.00 -77.21 369.50 5.62 -71.59 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 1.04 Total: 24.29 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: 5.35 Total: 5.40 kcal Atomic # 7 Polarization: -88.50 SS G_CDS: -3.45 Total: -91.95 kcal Atomic # 8 Polarization: -53.55 SS G_CDS: -0.09 Total: -53.63 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.74 Total: -3.17 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -77.21 5.62 -71.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743887163.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.556 kcal (2) G-P(sol) polarization free energy of solvation -77.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds