Wall clock time and date at job start Sat Apr 11 2020 07:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 110.54098 * 2 1 4 4 C 1.38255 * 119.97136 * 179.71243 * 3 2 1 5 5 C 1.38195 * 120.02194 * 179.76296 * 4 3 2 6 6 C 1.38464 * 119.97560 * 0.51832 * 5 4 3 7 7 F 1.35091 * 120.02387 * 179.76379 * 6 5 4 8 8 C 1.38454 * 119.94571 * 359.73826 * 6 5 4 9 9 C 1.38192 * 119.97919 * 0.02562 * 8 6 5 10 10 C 1.54232 * 110.60253 * 123.01718 * 2 1 3 11 11 C 1.51313 * 103.55476 * 118.51807 * 10 2 1 12 12 O 1.21234 * 125.39346 * 180.26579 * 11 10 2 13 13 N 1.33870 * 109.20903 * 359.97438 * 11 10 2 14 14 C 1.46499 * 122.76499 * 179.97438 * 13 11 10 15 15 N 1.46503 * 109.47141 * 90.02445 * 14 13 11 16 16 C 1.36935 * 120.00074 * 89.99864 * 15 14 13 17 17 H 1.08002 * 119.99973 * 220.92499 * 16 15 14 18 18 C 1.38814 * 119.99998 * 40.92448 * 16 15 14 19 19 N 1.31627 * 119.99574 * 18.65774 * 18 16 15 20 20 Si 1.86796 * 120.00185 * 198.65484 * 18 16 15 21 21 H 1.48497 * 109.47020 * 90.00387 * 20 18 16 22 22 H 1.48497 * 109.46991 * 210.00084 * 20 18 16 23 23 H 1.48492 * 109.47247 * 329.99902 * 20 18 16 24 24 C 1.46502 * 119.99896 * 270.00479 * 15 14 13 25 25 C 1.53005 * 117.49790 * 194.67947 * 24 15 14 26 26 C 1.52997 * 59.99920 * 252.50996 * 25 24 15 27 27 C 1.33874 * 114.47695 * 359.97438 * 13 11 10 28 28 O 1.21227 * 125.40219 * 179.97438 * 27 13 11 29 29 H 1.08994 * 109.47357 * 181.39202 * 1 2 3 30 30 H 1.09001 * 109.47376 * 301.39577 * 1 2 3 31 31 H 1.08999 * 109.46592 * 61.39591 * 1 2 3 32 32 H 1.08002 * 119.98438 * 0.02689 * 4 3 2 33 33 H 1.08005 * 120.01126 * 180.25387 * 5 4 3 34 34 H 1.08005 * 120.00796 * 180.02562 * 8 6 5 35 35 H 1.08002 * 119.98894 * 180.02562 * 9 8 6 36 36 H 1.09006 * 110.60828 * 359.97438 * 10 2 1 37 37 H 1.08999 * 110.60529 * 237.03402 * 10 2 1 38 38 H 1.08996 * 109.47813 * 210.02433 * 14 13 11 39 39 H 1.09003 * 109.47260 * 330.02905 * 14 13 11 40 40 H 0.97002 * 119.99485 * 184.93268 * 19 18 16 41 41 H 1.09002 * 115.55132 * 340.38453 * 24 15 14 42 42 H 1.09006 * 117.49672 * 359.97438 * 25 24 15 43 43 H 1.08998 * 117.49766 * 145.01960 * 25 24 15 44 44 H 1.09001 * 117.49911 * 252.50511 * 26 25 24 45 45 H 1.09000 * 117.50048 * 107.49158 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0588 1.4111 0.0000 4 6 3.4226 1.6377 0.0060 5 6 3.9087 2.9313 0.0011 6 6 3.0292 4.0008 0.0009 7 9 3.5033 5.2658 0.0009 8 6 1.6636 3.7726 0.0003 9 6 1.1798 2.4782 0.0003 10 6 2.0727 -0.7866 1.2105 11 6 2.8549 -1.9166 0.5774 12 8 3.4486 -2.7842 1.1812 13 7 2.7821 -1.8103 -0.7551 14 6 3.4371 -2.7553 -1.6629 15 7 2.5197 -3.8564 -1.9667 16 6 1.6734 -3.7662 -3.0394 17 1 0.6546 -4.1145 -2.9543 18 6 2.1249 -3.2273 -4.2363 19 7 3.4167 -3.1435 -4.4745 20 14 0.8992 -2.6211 -5.5090 21 1 0.5993 -1.1876 -5.2638 22 1 1.4768 -2.7806 -6.8677 23 1 -0.3526 -3.4133 -5.4073 24 6 2.5077 -5.0538 -1.1227 25 6 1.7981 -6.2950 -1.6676 26 6 1.1648 -5.4884 -0.5322 27 6 2.0614 -0.7692 -1.1898 28 8 1.8668 -0.4863 -2.3525 29 1 -0.3634 -1.0273 0.0250 30 1 -0.3634 0.5354 0.8772 31 1 -0.3632 0.4920 -0.9023 32 1 4.1083 0.8033 0.0103 33 1 4.9742 3.1081 0.0016 34 1 0.9767 4.6061 -0.0002 35 1 0.1146 2.3000 -0.0006 36 1 1.2527 -1.1776 1.8130 37 1 2.7274 -0.1581 1.8142 38 1 3.7087 -2.2435 -2.5861 39 1 4.3354 -3.1511 -1.1890 40 1 3.7341 -2.7025 -5.2781 41 1 3.3989 -5.2094 -0.5147 42 1 1.3398 -6.2205 -2.6538 43 1 2.2225 -7.2675 -1.4182 44 1 1.1725 -5.9303 0.4642 45 1 0.2903 -4.8834 -0.7715 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811738407.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:47:39 Heat of formation + Delta-G solvation = -27.814282 kcal Electronic energy + Delta-G solvation = -31664.528026 eV Core-core repulsion = 27370.607640 eV Total energy + Delta-G solvation = -4293.920386 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.02616 -41.69738 -39.16139 -37.85379 -37.03410 -35.42918 -34.54596 -33.04045 -31.46428 -30.58796 -29.47790 -28.15163 -25.77845 -24.65862 -23.59127 -22.94144 -22.51613 -21.41581 -20.58206 -20.01530 -18.96182 -17.97566 -17.12617 -16.54853 -16.40186 -16.09455 -15.79162 -15.71849 -15.30615 -14.91650 -14.60038 -14.45740 -14.26124 -13.81782 -13.74799 -13.69571 -13.63229 -13.39108 -12.92616 -12.66444 -12.61204 -12.23590 -12.21171 -11.92700 -11.67408 -11.31218 -11.25178 -11.09576 -10.96932 -10.82919 -10.63781 -10.62593 -10.09221 -10.01457 -9.78310 -9.55610 -9.37724 -9.26956 -8.95024 -8.65448 -8.49457 -6.78167 -5.97597 -3.64251 0.92573 1.06903 2.08875 3.12316 3.28676 3.38489 3.41932 3.47328 3.52062 4.09220 4.27553 4.39125 4.44146 4.45107 4.61863 4.71301 4.74097 4.91841 4.99055 5.09542 5.16110 5.26987 5.31830 5.47924 5.51371 5.60285 5.71976 5.76205 5.86098 5.87555 5.93985 6.01862 6.03959 6.07947 6.12813 6.18978 6.31781 6.43256 6.48331 6.58807 6.70063 6.90953 7.05693 7.13229 7.61738 7.70810 7.97186 8.32356 8.50673 8.95476 9.57554 10.12090 11.03680 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.012491 B = 0.004144 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.165053 B = 6755.284599 C = 7850.927014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.063 4.063 3 C -0.068 4.068 4 C -0.083 4.083 5 C -0.147 4.147 6 C 0.094 3.906 7 F -0.142 7.142 8 C -0.151 4.151 9 C -0.078 4.078 10 C -0.153 4.153 11 C 0.524 3.476 12 O -0.496 6.496 13 N -0.571 5.571 14 C 0.336 3.664 15 N -0.532 5.532 16 C -0.277 4.277 17 H 0.062 0.938 18 C 0.042 3.958 19 N -0.882 5.882 20 Si 0.899 3.101 21 H -0.275 1.275 22 H -0.290 1.290 23 H -0.278 1.278 24 C 0.121 3.879 25 C -0.189 4.189 26 C -0.221 4.221 27 C 0.536 3.464 28 O -0.451 6.451 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.130 0.870 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.140 0.860 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.129 0.871 39 H 0.066 0.934 40 H 0.259 0.741 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.814 10.678 11.947 16.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.067 4.067 3 C -0.068 4.068 4 C -0.101 4.101 5 C -0.165 4.165 6 C 0.075 3.925 7 F -0.121 7.121 8 C -0.170 4.170 9 C -0.096 4.096 10 C -0.193 4.193 11 C 0.312 3.688 12 O -0.370 6.370 13 N -0.318 5.318 14 C 0.130 3.870 15 N -0.247 5.247 16 C -0.406 4.406 17 H 0.079 0.921 18 C -0.160 4.160 19 N -0.522 5.522 20 Si 0.727 3.273 21 H -0.201 1.201 22 H -0.216 1.216 23 H -0.203 1.203 24 C 0.013 3.987 25 C -0.228 4.228 26 C -0.262 4.262 27 C 0.321 3.679 28 O -0.319 6.319 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.148 0.852 33 H 0.155 0.845 34 H 0.154 0.846 35 H 0.158 0.842 36 H 0.134 0.866 37 H 0.130 0.870 38 H 0.146 0.854 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.111 0.889 42 H 0.118 0.882 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.416 10.346 11.316 15.522 hybrid contribution -0.584 0.511 -0.662 1.019 sum -2.999 10.857 10.654 15.504 Atomic orbital electron populations 1.21803 0.90485 1.03669 1.03173 1.20437 0.98713 0.92460 0.95112 1.19359 0.93334 0.93149 1.00992 1.20901 0.94932 0.96548 0.97687 1.21085 1.00257 0.91686 1.03514 1.17737 0.92582 0.78947 1.03209 1.91490 1.89068 1.37541 1.93967 1.21120 0.93572 0.98376 1.03928 1.20998 1.00517 0.90679 0.97439 1.22757 1.02000 0.96768 0.97799 1.20676 0.79494 0.85505 0.83116 1.90698 1.42386 1.36697 1.67182 1.48804 1.46624 1.27243 1.09125 1.21714 0.88291 0.83939 0.93050 1.43766 1.43132 1.10136 1.27711 1.18843 0.91791 1.41924 0.88052 0.92076 1.25160 0.95497 0.98988 0.96398 1.69939 1.12647 1.42384 1.27237 0.86362 0.80783 0.79933 0.80182 1.20080 1.21638 1.20318 1.21271 0.92797 0.88236 0.96384 1.23053 1.06000 0.94899 0.98815 1.23276 1.00637 1.05930 0.96329 1.20247 0.77679 0.80485 0.89514 1.90782 1.54389 1.68094 1.18618 0.91116 0.90863 0.90751 0.85176 0.84538 0.84603 0.84184 0.86562 0.86960 0.85411 0.91606 0.93054 0.88880 0.88165 0.90614 0.90791 0.89977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.51 7.07 37.16 0.26 -1.24 16 2 C -0.06 -0.84 0.90 -155.87 -0.14 -0.98 16 3 C -0.07 -0.82 4.80 -104.62 -0.50 -1.33 16 4 C -0.08 -1.00 8.55 -39.59 -0.34 -1.34 16 5 C -0.15 -1.65 10.03 -39.51 -0.40 -2.05 16 6 C 0.09 1.08 7.30 -39.42 -0.29 0.79 16 7 F -0.14 -1.68 17.27 2.25 0.04 -1.64 16 8 C -0.15 -1.55 10.03 -39.52 -0.40 -1.94 16 9 C -0.08 -0.82 9.04 -39.60 -0.36 -1.18 16 10 C -0.15 -1.85 6.07 -26.94 -0.16 -2.01 16 11 C 0.52 8.88 8.07 -11.09 -0.09 8.79 16 12 O -0.50 -9.58 17.48 5.60 0.10 -9.48 16 13 N -0.57 -10.97 2.79 -118.82 -0.33 -11.31 16 14 C 0.34 7.62 5.74 -63.75 -0.37 7.26 16 15 N -0.53 -12.77 3.00 -169.34 -0.51 -13.28 16 16 C -0.28 -7.27 7.92 -15.06 -0.12 -7.39 16 17 H 0.06 1.65 7.33 -52.49 -0.38 1.27 16 18 C 0.04 1.14 4.99 -17.43 -0.09 1.05 16 19 N -0.88 -24.47 11.54 55.49 0.64 -23.83 16 20 Si 0.90 21.92 29.60 -169.99 -5.03 16.89 16 21 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C 0.12 2.63 6.62 -67.93 -0.45 2.18 16 25 C -0.19 -3.80 9.83 -26.73 -0.26 -4.06 16 26 C -0.22 -4.30 10.09 -26.73 -0.27 -4.57 16 27 C 0.54 10.00 6.33 -11.08 -0.07 9.93 16 28 O -0.45 -10.29 17.48 5.60 0.10 -10.19 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.58 7.50 -51.93 -0.39 0.19 16 31 H 0.07 0.88 7.67 -51.93 -0.40 0.49 16 32 H 0.13 1.57 7.99 -52.49 -0.42 1.15 16 33 H 0.14 1.30 8.06 -52.48 -0.42 0.87 16 34 H 0.14 1.09 8.06 -52.48 -0.42 0.66 16 35 H 0.14 1.17 6.00 -52.49 -0.32 0.86 16 36 H 0.12 1.18 7.74 -51.93 -0.40 0.78 16 37 H 0.11 1.12 7.32 -51.93 -0.38 0.74 16 38 H 0.13 3.28 5.35 -51.93 -0.28 3.00 16 39 H 0.07 1.45 7.73 -51.93 -0.40 1.05 16 40 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 41 H 0.09 1.96 8.10 -51.93 -0.42 1.54 16 42 H 0.10 2.22 7.04 -51.93 -0.37 1.85 16 43 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.08 1.69 7.94 -51.93 -0.41 1.28 16 LS Contribution 380.40 15.07 5.73 5.73 Total: -1.00 -30.88 380.40 -9.11 -39.99 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -5.82 Total: 5.23 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -4.03 Total: 1.89 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: -0.20 Total: -48.41 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: 0.20 Total: -19.67 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.88 -9.11 -39.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811738407.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.173 kcal (2) G-P(sol) polarization free energy of solvation -30.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds