Wall clock time and date at job start Sat Apr 11 2020 07:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.33984 * 126.87319 * 2 1 4 4 N 1.20850 * 111.83854 * 179.97438 * 3 2 1 5 5 C 1.30027 * 111.94535 * 359.97438 * 4 3 2 6 6 C 1.50700 * 126.86726 * 179.97438 * 5 4 3 7 7 C 1.50694 * 109.47023 * 90.03001 * 6 5 4 8 8 O 1.21295 * 119.99986 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00259 * 180.02562 * 7 6 5 10 10 C 1.37094 * 120.00183 * 180.02562 * 9 7 6 11 11 H 1.08000 * 119.99631 * 222.83339 * 10 9 7 12 12 C 1.38950 * 120.00324 * 42.83093 * 10 9 7 13 13 N 1.31409 * 119.99631 * 19.09129 * 12 10 9 14 14 Si 1.86803 * 120.00070 * 199.09011 * 12 10 9 15 15 H 1.48496 * 109.47162 * 60.00160 * 14 12 10 16 16 H 1.48497 * 109.47217 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.46871 * 300.00351 * 14 12 10 18 18 C 1.46503 * 119.99470 * 359.97438 * 9 7 6 19 19 C 1.54272 * 110.03147 * 239.57904 * 18 9 7 20 20 C 1.54964 * 104.15777 * 217.14135 * 19 18 9 21 21 C 1.54889 * 102.77947 * 37.88809 * 20 19 18 22 22 C 1.53881 * 110.02973 * 122.36470 * 18 9 7 23 23 C 1.36577 * 126.86703 * 179.97438 * 2 1 3 24 24 C 1.48508 * 128.15955 * 0.02562 * 23 2 1 25 25 N 1.34024 * 126.67121 * 179.66460 * 24 23 2 26 26 N 1.28986 * 107.26755 * 179.87140 * 25 24 23 27 27 N 1.28726 * 108.94189 * 0.40107 * 26 25 24 28 28 H 0.97007 * 125.34740 * 179.71350 * 27 26 25 29 29 N 1.28874 * 109.31232 * 359.74473 * 27 26 25 30 30 H 1.08995 * 109.47249 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.47347 * 120.02320 * 1 2 3 32 32 H 1.09000 * 109.47609 * 240.02440 * 1 2 3 33 33 H 1.08999 * 109.46991 * 210.02936 * 6 5 4 34 34 H 1.08997 * 109.46774 * 330.02889 * 6 5 4 35 35 H 0.97011 * 119.99597 * 174.71570 * 13 12 10 36 36 H 1.08992 * 110.02148 * 0.97424 * 18 9 7 37 37 H 1.08999 * 110.48377 * 335.78337 * 19 18 9 38 38 H 1.08997 * 110.48596 * 98.43172 * 19 18 9 39 39 H 1.09005 * 110.72078 * 279.57440 * 20 19 18 40 40 H 1.08999 * 110.92339 * 156.29674 * 20 19 18 41 41 H 1.09001 * 110.48634 * 203.40534 * 21 20 19 42 42 H 1.08996 * 110.59647 * 80.81723 * 21 20 19 43 43 H 1.08999 * 110.02700 * 238.56735 * 22 18 9 44 44 H 1.08998 * 110.02856 * 359.95156 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3109 1.0718 0.0000 4 7 3.4780 0.7583 0.0005 5 6 3.6345 -0.5325 0.0014 6 6 4.9402 -1.2850 0.0017 7 6 5.3753 -1.5354 1.4226 8 8 4.6925 -1.1411 2.3444 9 7 6.5235 -2.1965 1.6692 10 6 6.9191 -2.4248 2.9619 11 1 7.9527 -2.2861 3.2427 12 6 5.9903 -2.8344 3.9107 13 7 4.8483 -3.3599 3.5280 14 14 6.3650 -2.6379 5.7302 15 1 6.5831 -1.2018 6.0384 16 1 5.2217 -3.1480 6.5289 17 1 7.5883 -3.4084 6.0696 18 6 7.3484 -2.6722 0.5559 19 6 7.5056 -4.2050 0.6319 20 6 8.9622 -4.4601 0.1684 21 6 9.7336 -3.2709 0.7928 22 6 8.7644 -2.0784 0.6577 23 6 2.3264 -1.0927 0.0005 24 6 1.9426 -2.5273 0.0006 25 7 2.7743 -3.5783 -0.0052 26 7 2.0460 -4.6429 0.0000 27 7 0.8052 -4.3003 0.0002 28 1 0.0536 -4.9137 -0.0003 29 7 0.7180 -3.0145 0.0006 30 1 -0.3633 1.0276 -0.0005 31 1 -0.3634 -0.5142 -0.8898 32 1 -0.3634 -0.5134 0.8902 33 1 4.8106 -2.2377 -0.5118 34 1 5.6993 -0.6955 -0.5122 35 1 4.2329 -3.7160 4.1880 36 1 6.8927 -2.3903 -0.3932 37 1 7.3648 -4.5526 1.6554 38 1 6.7997 -4.6946 -0.0389 39 1 9.0305 -4.4365 -0.9192 40 1 9.3339 -5.4083 0.5569 41 1 10.6530 -3.0798 0.2393 42 1 9.9547 -3.4658 1.8422 43 1 8.9960 -1.5090 -0.2424 44 1 8.8375 -1.4357 1.5350 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826343057.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:47:52 Heat of formation + Delta-G solvation = 161.708732 kcal Electronic energy + Delta-G solvation = -31822.971068 eV Core-core repulsion = 27589.481728 eV Total energy + Delta-G solvation = -4233.489339 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.154 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.66511 -44.11018 -38.75817 -36.68782 -35.07343 -33.86509 -33.60189 -32.96441 -32.02977 -31.47344 -28.76823 -27.94096 -27.82775 -26.72865 -24.81101 -24.45574 -24.03933 -21.64473 -20.43541 -19.97656 -19.60372 -19.10152 -18.64423 -17.52957 -16.83694 -16.75375 -16.17612 -15.79635 -15.17307 -14.73049 -14.54297 -14.20112 -14.03900 -13.59791 -13.48637 -13.26191 -13.19210 -12.69732 -12.63310 -12.29059 -12.06384 -11.92126 -11.72440 -11.29191 -11.20729 -11.05217 -10.93723 -10.90990 -10.74986 -10.67392 -10.52862 -10.43294 -10.38242 -10.33570 -10.09806 -9.93335 -9.73942 -9.45910 -8.79040 -8.59341 -7.89801 -6.92285 -5.95364 -3.67765 1.10934 1.56279 2.20286 2.42678 3.06448 3.22638 3.37370 3.43527 3.48545 3.97121 4.25188 4.33603 4.47930 4.62176 4.78319 5.12428 5.29301 5.32681 5.34875 5.42318 5.45090 5.51823 5.57812 5.59886 5.69547 5.81630 5.89755 6.00802 6.01597 6.06692 6.18323 6.21605 6.25353 6.35578 6.41504 6.47934 6.54759 6.58009 6.60017 6.74765 6.91787 7.08061 7.34298 7.76825 8.41734 8.45765 8.59523 9.21318 9.33687 9.83123 10.46252 11.11864 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.010091 B = 0.004437 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2774.194367 B = 6308.702012 C = 6544.749053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.006 3.994 3 O 0.101 5.899 4 N -0.358 5.358 5 C 0.107 3.893 6 C -0.070 4.070 7 C 0.491 3.509 8 O -0.531 6.531 9 N -0.444 5.444 10 C -0.340 4.340 11 H 0.076 0.924 12 C 0.075 3.925 13 N -0.821 5.821 14 Si 0.904 3.096 15 H -0.276 1.276 16 H -0.290 1.290 17 H -0.280 1.280 18 C 0.130 3.870 19 C -0.123 4.123 20 C -0.123 4.123 21 C -0.117 4.117 22 C -0.132 4.132 23 C -0.122 4.122 24 C 0.266 3.734 25 N -0.233 5.233 26 N -0.045 5.045 27 N -0.237 5.237 28 H 0.471 0.529 29 N -0.304 5.304 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.258 0.742 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.065 0.935 43 H 0.052 0.948 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.999 -0.946 -11.388 13.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.062 4.062 3 O 0.041 5.959 4 N -0.064 5.064 5 C -0.055 4.055 6 C -0.112 4.112 7 C 0.277 3.723 8 O -0.409 6.409 9 N -0.166 5.166 10 C -0.467 4.467 11 H 0.094 0.906 12 C -0.136 4.136 13 N -0.454 5.454 14 Si 0.732 3.268 15 H -0.202 1.202 16 H -0.216 1.216 17 H -0.206 1.206 18 C 0.025 3.975 19 C -0.161 4.161 20 C -0.161 4.161 21 C -0.154 4.154 22 C -0.170 4.170 23 C -0.129 4.129 24 C -0.014 4.014 25 N -0.106 5.106 26 N -0.041 5.041 27 N -0.081 5.081 28 H 0.325 0.675 29 N -0.156 5.156 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.125 0.875 34 H 0.109 0.891 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.109 0.891 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.616 -0.330 -10.842 12.705 hybrid contribution -0.725 -0.821 1.065 1.528 sum -7.341 -1.151 -9.777 12.280 Atomic orbital electron populations 1.20341 0.83448 1.04170 1.04538 1.24391 0.96066 0.85533 1.00161 1.84800 1.11438 1.31963 1.67735 1.73695 0.96004 1.15826 1.20896 1.22858 0.95630 0.88910 0.98064 1.20257 0.90434 0.99711 1.00768 1.19294 0.84015 0.81407 0.87621 1.90533 1.52933 1.52029 1.45393 1.43237 1.20085 1.48802 1.04505 1.18700 0.95246 1.49228 0.83531 0.90596 1.25164 0.95344 0.94187 0.98931 1.69882 1.08887 1.32661 1.33939 0.86419 0.77179 0.78625 0.84600 1.20207 1.21608 1.20555 1.21694 0.91438 0.93758 0.90640 1.22634 0.94285 0.95998 1.03194 1.22457 0.96769 0.97717 0.99148 1.22249 0.97075 0.95413 1.00687 1.22468 0.95260 0.97840 1.01451 1.17609 0.93058 0.87775 1.14461 1.22023 0.84547 0.93753 1.01085 1.76239 1.24806 0.93859 1.15736 1.78982 0.88591 1.22086 1.14435 1.47628 1.09103 1.04306 1.47106 0.67530 1.74779 1.24057 0.93312 1.23489 0.89835 0.88987 0.88902 0.87478 0.89115 0.93219 0.91711 0.89126 0.92758 0.92589 0.92456 0.93037 0.91661 0.92970 0.90646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 9.76 36.00 0.35 -0.34 16 2 C 0.01 0.10 7.54 -34.91 -0.26 -0.17 16 3 O 0.10 1.74 11.17 17.34 0.19 1.93 16 4 N -0.36 -7.18 12.04 33.67 0.41 -6.77 16 5 C 0.11 2.22 5.86 -81.79 -0.48 1.75 16 6 C -0.07 -1.48 4.36 -29.04 -0.13 -1.61 16 7 C 0.49 12.73 6.96 -10.99 -0.08 12.65 16 8 O -0.53 -16.10 13.69 5.54 0.08 -16.02 16 9 N -0.44 -11.06 2.46 -106.54 -0.26 -11.32 16 10 C -0.34 -9.24 7.45 -14.94 -0.11 -9.35 16 11 H 0.08 2.01 7.08 -52.49 -0.37 1.64 16 12 C 0.07 2.11 4.36 -17.47 -0.08 2.04 16 13 N -0.82 -24.41 11.67 55.50 0.65 -23.76 16 14 Si 0.90 22.54 29.60 -169.99 -5.03 17.50 16 15 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 16 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 C 0.13 2.60 3.20 -66.80 -0.21 2.39 16 19 C -0.12 -2.36 6.42 -25.03 -0.16 -2.52 16 20 C -0.12 -1.90 6.91 -24.70 -0.17 -2.07 16 21 C -0.12 -1.83 6.83 -25.07 -0.17 -2.00 16 22 C -0.13 -2.32 6.19 -25.61 -0.16 -2.48 16 23 C -0.12 -2.29 6.31 -104.70 -0.66 -2.95 16 24 C 0.27 4.88 8.16 -156.32 -1.28 3.60 16 25 N -0.23 -4.62 11.30 32.16 0.36 -4.26 16 26 N -0.05 -0.75 13.47 60.35 0.81 0.06 16 27 N -0.24 -2.94 7.90 60.35 0.48 -2.47 16 28 H 0.47 3.20 8.96 -340.36 -3.05 0.15 16 29 N -0.30 -4.43 11.77 32.18 0.38 -4.05 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.11 2.16 6.77 -51.93 -0.35 1.81 16 34 H 0.09 1.69 7.77 -51.93 -0.40 1.28 16 35 H 0.26 7.54 8.32 -40.82 -0.34 7.20 16 36 H 0.06 1.19 5.82 -51.93 -0.30 0.88 16 37 H 0.09 2.07 7.10 -51.93 -0.37 1.70 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.07 1.49 6.86 -51.93 -0.36 1.13 16 LS Contribution 368.66 15.07 5.56 5.56 Total: -1.00 -36.72 368.66 -8.12 -44.84 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -8.15 Total: -0.17 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -3.59 Total: -1.06 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: 2.82 Total: -52.58 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: 0.27 Total: -14.09 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.03 Total: 17.50 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.72 -8.12 -44.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826343057.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.549 kcal (2) G-P(sol) polarization free energy of solvation -36.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds