Wall clock time and date at job start Sat Apr 11 2020 07:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.33984 * 126.87319 * 2 1 4 4 N 1.20850 * 111.83854 * 179.97438 * 3 2 1 5 5 C 1.30027 * 111.94535 * 359.97438 * 4 3 2 6 6 C 1.50700 * 126.86726 * 179.97438 * 5 4 3 7 7 C 1.50694 * 109.47023 * 90.03001 * 6 5 4 8 8 O 1.21295 * 119.99986 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00259 * 180.02562 * 7 6 5 10 10 C 1.37094 * 120.00183 * 180.02562 * 9 7 6 11 11 H 1.08000 * 119.99631 * 222.83339 * 10 9 7 12 12 C 1.38950 * 120.00324 * 42.83093 * 10 9 7 13 13 N 1.31409 * 119.99631 * 19.09129 * 12 10 9 14 14 Si 1.86803 * 120.00070 * 199.09011 * 12 10 9 15 15 H 1.48496 * 109.47162 * 60.00160 * 14 12 10 16 16 H 1.48497 * 109.47217 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.46871 * 300.00351 * 14 12 10 18 18 C 1.46503 * 119.99470 * 359.97438 * 9 7 6 19 19 C 1.54272 * 110.03147 * 239.57904 * 18 9 7 20 20 C 1.54964 * 104.15777 * 217.14135 * 19 18 9 21 21 C 1.54889 * 102.77947 * 37.88809 * 20 19 18 22 22 C 1.53881 * 110.02973 * 122.36470 * 18 9 7 23 23 C 1.36577 * 126.86703 * 179.97438 * 2 1 3 24 24 C 1.48508 * 128.15955 * 0.02562 * 23 2 1 25 25 N 1.34024 * 126.67121 * 179.66460 * 24 23 2 26 26 N 1.28986 * 107.26755 * 179.87140 * 25 24 23 27 27 N 1.28726 * 108.94189 * 0.40107 * 26 25 24 28 28 H 0.97007 * 125.34740 * 179.71350 * 27 26 25 29 29 N 1.28874 * 109.31232 * 359.74473 * 27 26 25 30 30 H 1.08995 * 109.47249 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.47347 * 120.02320 * 1 2 3 32 32 H 1.09000 * 109.47609 * 240.02440 * 1 2 3 33 33 H 1.08999 * 109.46991 * 210.02936 * 6 5 4 34 34 H 1.08997 * 109.46774 * 330.02889 * 6 5 4 35 35 H 0.97011 * 119.99597 * 174.71570 * 13 12 10 36 36 H 1.08992 * 110.02148 * 0.97424 * 18 9 7 37 37 H 1.08999 * 110.48377 * 335.78337 * 19 18 9 38 38 H 1.08997 * 110.48596 * 98.43172 * 19 18 9 39 39 H 1.09005 * 110.72078 * 279.57440 * 20 19 18 40 40 H 1.08999 * 110.92339 * 156.29674 * 20 19 18 41 41 H 1.09001 * 110.48634 * 203.40534 * 21 20 19 42 42 H 1.08996 * 110.59647 * 80.81723 * 21 20 19 43 43 H 1.08999 * 110.02700 * 238.56735 * 22 18 9 44 44 H 1.08998 * 110.02856 * 359.95156 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3109 1.0718 0.0000 4 7 3.4780 0.7583 0.0005 5 6 3.6345 -0.5325 0.0014 6 6 4.9402 -1.2850 0.0017 7 6 5.3753 -1.5354 1.4226 8 8 4.6925 -1.1411 2.3444 9 7 6.5235 -2.1965 1.6692 10 6 6.9191 -2.4248 2.9619 11 1 7.9527 -2.2861 3.2427 12 6 5.9903 -2.8344 3.9107 13 7 4.8483 -3.3599 3.5280 14 14 6.3650 -2.6379 5.7302 15 1 6.5831 -1.2018 6.0384 16 1 5.2217 -3.1480 6.5289 17 1 7.5883 -3.4084 6.0696 18 6 7.3484 -2.6722 0.5559 19 6 7.5056 -4.2050 0.6319 20 6 8.9622 -4.4601 0.1684 21 6 9.7336 -3.2709 0.7928 22 6 8.7644 -2.0784 0.6577 23 6 2.3264 -1.0927 0.0005 24 6 1.9426 -2.5273 0.0006 25 7 2.7743 -3.5783 -0.0052 26 7 2.0460 -4.6429 0.0000 27 7 0.8052 -4.3003 0.0002 28 1 0.0536 -4.9137 -0.0003 29 7 0.7180 -3.0145 0.0006 30 1 -0.3633 1.0276 -0.0005 31 1 -0.3634 -0.5142 -0.8898 32 1 -0.3634 -0.5134 0.8902 33 1 4.8106 -2.2377 -0.5118 34 1 5.6993 -0.6955 -0.5122 35 1 4.2329 -3.7160 4.1880 36 1 6.8927 -2.3903 -0.3932 37 1 7.3648 -4.5526 1.6554 38 1 6.7997 -4.6946 -0.0389 39 1 9.0305 -4.4365 -0.9192 40 1 9.3339 -5.4083 0.5569 41 1 10.6530 -3.0798 0.2393 42 1 9.9547 -3.4658 1.8422 43 1 8.9960 -1.5090 -0.2424 44 1 8.8375 -1.4357 1.5350 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826343057.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:47:52 Heat of formation + Delta-G solvation = 136.315947 kcal Electronic energy + Delta-G solvation = -31824.072181 eV Core-core repulsion = 27589.481728 eV Total energy + Delta-G solvation = -4234.590453 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.154 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -46.07382 -45.36749 -40.56542 -38.34913 -36.46703 -35.22031 -35.13268 -34.67540 -33.46805 -33.22659 -30.47615 -29.37562 -28.91922 -28.33696 -26.48403 -25.91970 -25.46538 -23.09137 -22.04332 -21.33586 -21.16777 -20.48809 -20.18124 -18.98891 -18.18361 -18.05232 -17.99113 -17.56280 -16.83279 -16.36304 -16.10151 -15.85403 -15.57526 -15.17117 -14.98963 -14.77040 -14.22206 -14.09294 -14.04184 -13.83036 -13.49828 -13.30601 -13.18456 -13.04657 -12.83661 -12.57721 -12.53009 -12.49131 -12.36606 -12.21137 -12.19089 -12.07152 -11.84356 -11.79139 -11.72268 -11.31432 -11.29264 -10.97384 -10.65557 -10.06021 -9.92329 -8.95448 -8.09541 -5.83023 -0.11881 0.28712 0.73221 1.33834 1.39754 1.42270 1.44692 1.70493 2.02157 2.30437 2.53176 2.68046 2.97228 3.13399 3.31380 3.40199 3.49459 3.93205 3.98927 4.11052 4.14054 4.22651 4.27697 4.41638 4.43653 4.48046 4.61308 4.63034 4.69121 4.75722 4.84948 4.86861 4.90428 4.93852 4.99516 5.16333 5.18466 5.24009 5.33993 5.49757 5.60206 5.63448 5.68529 5.74585 6.29805 7.13264 7.17331 7.23214 7.32036 7.81001 8.46225 8.96898 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.010091 B = 0.004437 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2774.194367 B = 6308.702012 C = 6544.749053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.029 3.971 3 O 0.107 5.893 4 N -0.379 5.379 5 C 0.080 3.920 6 C -0.056 4.056 7 C 0.481 3.519 8 O -0.585 6.585 9 N -0.454 5.454 10 C -0.342 4.342 11 H 0.077 0.923 12 C 0.026 3.974 13 N -0.851 5.851 14 Si 0.956 3.044 15 H -0.287 1.287 16 H -0.294 1.294 17 H -0.258 1.258 18 C 0.119 3.881 19 C -0.121 4.121 20 C -0.110 4.110 21 C -0.112 4.112 22 C -0.128 4.128 23 C -0.152 4.152 24 C 0.248 3.752 25 N -0.279 5.279 26 N -0.059 5.059 27 N -0.200 5.200 28 H 0.494 0.506 29 N -0.280 5.280 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.096 0.904 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.248 0.752 36 H 0.083 0.917 37 H 0.047 0.953 38 H 0.053 0.947 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.048 0.952 43 H 0.082 0.918 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.288 -1.034 -13.059 14.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.039 4.039 3 O 0.046 5.954 4 N -0.085 5.085 5 C -0.082 4.082 6 C -0.097 4.097 7 C 0.268 3.732 8 O -0.466 6.466 9 N -0.175 5.175 10 C -0.469 4.469 11 H 0.094 0.906 12 C -0.181 4.181 13 N -0.486 5.486 14 Si 0.782 3.218 15 H -0.213 1.213 16 H -0.220 1.220 17 H -0.182 1.182 18 C 0.015 3.985 19 C -0.159 4.159 20 C -0.148 4.148 21 C -0.149 4.149 22 C -0.166 4.166 23 C -0.160 4.160 24 C -0.033 4.033 25 N -0.151 5.151 26 N -0.054 5.054 27 N -0.051 5.051 28 H 0.354 0.646 29 N -0.134 5.134 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.115 0.885 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.057 0.943 36 H 0.101 0.899 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.103 0.897 40 H 0.087 0.913 41 H 0.104 0.896 42 H 0.067 0.933 43 H 0.100 0.900 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.852 -0.467 -12.538 14.296 hybrid contribution -0.746 -0.783 1.537 1.879 sum -7.598 -1.250 -11.002 13.429 Atomic orbital electron populations 1.20664 0.79353 1.06706 1.05612 1.25246 0.97822 0.83884 0.96944 1.84750 1.10915 1.32455 1.67241 1.73641 0.97446 1.15758 1.21628 1.22924 0.96282 0.89450 0.99525 1.20032 0.91624 1.00500 0.97534 1.20023 0.83606 0.80474 0.89099 1.90479 1.54553 1.54144 1.47466 1.43475 1.20425 1.48457 1.05119 1.18892 0.95101 1.47920 0.85018 0.90560 1.25873 0.95447 0.94363 1.02427 1.70025 1.09848 1.34443 1.34241 0.85597 0.77632 0.77924 0.80634 1.21308 1.21973 1.18212 1.22034 0.92260 0.94473 0.89683 1.22528 0.97414 0.95249 1.00730 1.22418 0.93363 0.98135 1.00854 1.22235 0.97943 0.94385 1.00381 1.22432 0.94081 0.98457 1.01646 1.17843 0.92975 0.88929 1.16260 1.22077 0.85315 0.93588 1.02275 1.76192 1.26476 0.94847 1.17581 1.78893 0.89696 1.21498 1.15315 1.47704 1.09060 1.04215 1.44117 0.64628 1.74725 1.22327 0.93779 1.22551 0.86700 0.86662 0.88544 0.87003 0.87132 0.94255 0.89936 0.93448 0.92779 0.89680 0.91348 0.89607 0.93314 0.89952 0.93374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.16 9.76 71.23 0.70 -0.47 16 2 C 0.03 0.86 7.54 25.30 0.19 1.05 16 3 O 0.11 3.65 11.17 72.25 0.81 4.46 16 4 N -0.38 -15.35 12.04 -48.53 -0.58 -15.93 16 5 C 0.08 3.35 5.86 43.84 0.26 3.61 16 6 C -0.06 -2.40 4.36 29.10 0.13 -2.28 16 7 C 0.48 25.76 6.96 87.66 0.61 26.37 16 8 O -0.58 -36.97 13.69 -3.08 -0.04 -37.01 16 9 N -0.45 -23.23 2.46 -609.37 -1.50 -24.73 16 10 C -0.34 -19.18 7.45 84.04 0.63 -18.55 16 11 H 0.08 4.17 7.08 -2.91 -0.02 4.15 16 12 C 0.03 1.51 4.36 84.93 0.37 1.88 16 13 N -0.85 -52.82 11.67 21.66 0.25 -52.57 16 14 Si 0.96 47.69 29.60 68.60 2.03 49.72 16 15 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 16 H -0.29 -14.67 7.11 99.48 0.71 -13.97 16 17 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 18 C 0.12 4.77 3.20 45.72 0.15 4.91 16 19 C -0.12 -4.64 6.42 31.70 0.20 -4.44 16 20 C -0.11 -3.13 6.91 31.91 0.22 -2.91 16 21 C -0.11 -3.24 6.83 31.67 0.22 -3.03 16 22 C -0.13 -4.33 6.19 31.32 0.19 -4.14 16 23 C -0.15 -5.74 6.31 -19.92 -0.13 -5.87 16 24 C 0.25 9.06 8.16 137.41 1.12 10.18 16 25 N -0.28 -11.26 11.30 -52.17 -0.59 -11.85 16 26 N -0.06 -1.95 13.47 37.02 0.50 -1.45 16 27 N -0.20 -4.69 7.90 37.02 0.29 -4.40 16 28 H 0.49 5.63 8.96 -347.53 -3.12 2.52 16 29 N -0.28 -7.77 11.77 -52.11 -0.61 -8.39 16 30 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.11 4.64 6.77 -2.39 -0.02 4.62 16 34 H 0.11 4.14 7.77 -2.39 -0.02 4.12 16 35 H 0.25 15.23 8.32 -92.70 -0.77 14.46 16 36 H 0.08 2.96 5.82 -2.39 -0.01 2.95 16 37 H 0.05 2.23 7.10 -2.39 -0.02 2.22 16 38 H 0.05 2.02 8.14 -2.39 -0.02 2.01 16 39 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 40 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 43 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.05 1.90 6.86 -2.39 -0.02 1.88 16 Total: -1.00 -85.21 368.66 3.36 -81.85 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -2.04 Total: 13.98 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 4.85 Total: 6.33 kcal Atomic # 7 Polarization: -117.08 SS G_CDS: -2.24 Total: -119.32 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: 0.77 Total: -32.56 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 2.03 Total: 49.72 kcal Total: -85.21 3.36 -81.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826343057.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.167 kcal (2) G-P(sol) polarization free energy of solvation -85.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds