Wall clock time and date at job start Sat Apr 11 2020 07:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38036 * 119.95808 * 2 1 4 4 C 1.39492 * 119.74539 * 180.27438 * 3 2 1 5 5 C 1.40386 * 120.35074 * 359.72010 * 4 3 2 6 6 C 1.39027 * 118.99559 * 0.02562 * 5 4 3 7 7 F 1.35095 * 119.91813 * 179.97438 * 6 5 4 8 8 C 1.38458 * 119.95450 * 179.72409 * 2 1 3 9 9 N 1.39423 * 109.61638 * 180.02562 * 5 4 3 10 10 C 1.46495 * 124.29192 * 180.02562 * 9 5 4 11 11 N 1.46897 * 109.47564 * 90.00143 * 10 9 5 12 12 C 1.46847 * 111.00080 * 279.21348 * 11 10 9 13 13 C 1.53031 * 109.52502 * 174.15763 * 12 11 10 14 14 C 1.53116 * 109.28125 * 59.17882 * 13 12 11 15 15 C 1.53121 * 109.16086 * 302.34636 * 14 13 12 16 16 H 1.09001 * 109.53264 * 297.69752 * 15 14 13 17 17 C 1.50692 * 109.50829 * 177.59637 * 15 14 13 18 18 H 1.08001 * 119.99864 * 245.63010 * 17 15 14 19 19 C 1.37870 * 120.00299 * 65.62365 * 17 15 14 20 20 N 1.31512 * 120.00137 * 9.56431 * 19 17 15 21 21 Si 1.86799 * 120.00455 * 189.55905 * 19 17 15 22 22 H 1.48498 * 109.47176 * 94.99155 * 21 19 17 23 23 H 1.48502 * 109.47631 * 214.99502 * 21 19 17 24 24 H 1.48502 * 109.46916 * 334.99325 * 21 19 17 25 25 C 1.46846 * 111.00466 * 154.99906 * 11 10 9 26 26 C 1.34425 * 111.41342 * 0.02562 * 9 5 4 27 27 O 1.21315 * 126.23842 * 179.97438 * 26 9 5 28 28 C 1.47476 * 133.03739 * 179.72667 * 4 3 2 29 29 O 1.21352 * 127.58259 * 0.03334 * 28 4 3 30 30 H 1.08994 * 109.46699 * 270.27625 * 1 2 3 31 31 H 1.08999 * 109.46659 * 30.27725 * 1 2 3 32 32 H 1.09002 * 109.47187 * 150.27391 * 1 2 3 33 33 H 1.07998 * 120.12437 * 359.97150 * 3 2 1 34 34 H 1.07998 * 119.67130 * 359.97438 * 8 2 1 35 35 H 1.09000 * 109.47644 * 210.00393 * 10 9 5 36 36 H 1.09001 * 109.47388 * 330.00023 * 10 9 5 37 37 H 1.09003 * 109.46088 * 294.17421 * 12 11 10 38 38 H 1.09001 * 109.46411 * 54.13967 * 12 11 10 39 39 H 1.09005 * 109.50366 * 299.23520 * 13 12 11 40 40 H 1.09002 * 109.50575 * 179.12095 * 13 12 11 41 41 H 1.08997 * 109.52635 * 182.44099 * 14 13 12 42 42 H 1.09002 * 109.57845 * 62.28075 * 14 13 12 43 43 H 0.97001 * 120.00625 * 179.97438 * 20 19 17 44 44 H 1.08997 * 109.45957 * 305.86173 * 25 11 10 45 45 H 1.09003 * 109.45921 * 65.82278 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.1959 0.0000 4 6 3.5912 1.1908 -0.0058 5 6 4.2961 -0.0233 -0.0057 6 6 3.5829 -1.2167 -0.0003 7 9 4.2423 -2.3958 -0.0006 8 6 2.1983 -1.1996 0.0058 9 7 5.6669 0.2313 -0.0115 10 6 6.6994 -0.8080 -0.0136 11 7 7.0392 -1.1579 -1.3992 12 6 6.0549 -2.0904 -1.9630 13 6 6.3570 -2.3181 -3.4458 14 6 7.7704 -2.8887 -3.5920 15 6 8.7713 -1.9214 -2.9540 16 1 8.7429 -0.9676 -3.4808 17 6 10.1587 -2.5031 -3.0411 18 1 10.6853 -2.7810 -2.1400 19 6 10.7559 -2.6807 -4.2710 20 7 10.2012 -2.1743 -5.3506 21 14 12.3529 -3.6404 -4.4041 22 1 12.0536 -5.0554 -4.7409 23 1 13.2001 -3.0466 -5.4695 24 1 13.0749 -3.5823 -3.1077 25 6 8.3992 -1.7051 -1.4854 26 6 5.9208 1.5513 -0.0149 27 8 7.0172 2.0707 -0.0196 28 6 4.6017 2.2649 -0.0126 29 8 4.4083 3.4629 -0.0141 30 1 -0.3632 0.0050 1.0276 31 1 -0.3632 0.8875 -0.5181 32 1 -0.3634 -0.8924 -0.5096 33 1 1.6577 2.1320 -0.0005 34 1 1.6523 -2.1313 0.0107 35 1 7.5888 -0.4376 0.4962 36 1 6.3261 -1.6921 0.5033 37 1 6.1085 -3.0404 -1.4314 38 1 5.0545 -1.6708 -1.8565 39 1 6.2900 -1.3706 -3.9806 40 1 5.6356 -3.0224 -3.8603 41 1 8.0060 -3.0119 -4.6490 42 1 7.8277 -3.8551 -3.0910 43 1 10.6215 -2.2989 -6.2159 44 1 9.1015 -1.0057 -1.0319 45 1 8.4418 -2.6570 -0.9559 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853525929.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:48:07 Heat of formation + Delta-G solvation = -55.867896 kcal Electronic energy + Delta-G solvation = -31064.886229 eV Core-core repulsion = 26769.749347 eV Total energy + Delta-G solvation = -4295.136882 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.27162 -42.04475 -39.05543 -38.86100 -38.02096 -36.57318 -33.84016 -32.34421 -31.55217 -31.10996 -29.95529 -28.07439 -27.01435 -25.03888 -24.89978 -22.66321 -22.32881 -21.67602 -21.56207 -20.35535 -18.77640 -18.05874 -17.64318 -17.04170 -17.02615 -16.35092 -16.08509 -15.75814 -15.69378 -15.37439 -15.03227 -14.70486 -14.50537 -14.19782 -14.02440 -13.89247 -13.75775 -13.47872 -13.05026 -12.63996 -12.62609 -12.50140 -12.43469 -12.36252 -12.31438 -12.05942 -11.86921 -11.46219 -10.97108 -10.82497 -10.76644 -10.69483 -10.21725 -9.95789 -9.77674 -9.53049 -9.45206 -9.16751 -8.80665 -8.35284 -8.30532 -7.92761 -6.02277 -4.04419 -0.32838 0.60041 1.30433 2.12171 2.76760 3.04164 3.13975 3.30126 3.37768 3.40297 3.69178 3.97665 4.12053 4.18974 4.32143 4.48481 4.61904 4.68524 4.90579 5.04950 5.17126 5.19527 5.27654 5.29746 5.37291 5.44271 5.53585 5.58065 5.67944 5.88142 5.89092 5.96031 6.08417 6.17939 6.24243 6.37846 6.45808 6.56437 6.61155 6.67877 6.82581 7.09612 7.19210 7.38433 7.52442 7.57175 7.71671 7.96518 8.06683 8.42312 8.99509 9.58813 11.06906 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.016677 B = 0.003065 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.605681 B = 9134.484468 C =10057.896102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.102 4.102 3 C -0.014 4.014 4 C -0.213 4.213 5 C 0.170 3.830 6 C 0.071 3.929 7 F -0.127 7.127 8 C -0.079 4.079 9 N -0.530 5.530 10 C 0.271 3.729 11 N -0.551 5.551 12 C 0.064 3.936 13 C -0.117 4.117 14 C -0.105 4.105 15 C 0.055 3.945 16 H 0.042 0.958 17 C -0.518 4.518 18 H 0.055 0.945 19 C 0.066 3.934 20 N -0.885 5.885 21 Si 0.888 3.112 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C 0.074 3.926 26 C 0.497 3.503 27 O -0.431 6.431 28 C 0.396 3.604 29 O -0.370 6.370 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.144 0.856 34 H 0.150 0.850 35 H 0.106 0.894 36 H 0.072 0.928 37 H 0.033 0.967 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.049 0.951 41 H 0.074 0.926 42 H 0.034 0.966 43 H 0.260 0.740 44 H 0.066 0.934 45 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.033 1.838 12.701 25.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.104 4.104 3 C -0.033 4.033 4 C -0.217 4.217 5 C 0.071 3.929 6 C 0.049 3.951 7 F -0.106 7.106 8 C -0.098 4.098 9 N -0.255 5.255 10 C 0.061 3.939 11 N -0.277 5.277 12 C -0.063 4.063 13 C -0.155 4.155 14 C -0.143 4.143 15 C 0.036 3.964 16 H 0.061 0.939 17 C -0.557 4.557 18 H 0.073 0.927 19 C -0.136 4.136 20 N -0.523 5.523 21 Si 0.716 3.284 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.052 4.052 26 C 0.280 3.720 27 O -0.299 6.299 28 C 0.265 3.735 29 O -0.238 6.238 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.162 0.838 34 H 0.167 0.833 35 H 0.124 0.876 36 H 0.090 0.910 37 H 0.051 0.949 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.053 0.947 43 H 0.070 0.930 44 H 0.084 0.916 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -21.237 3.180 12.225 24.710 hybrid contribution 1.144 -1.736 0.159 2.085 sum -20.093 1.444 12.385 23.647 Atomic orbital electron populations 1.20758 0.89367 1.03593 1.02906 1.19634 0.96932 0.91357 1.02454 1.20741 0.90609 0.98862 0.93091 1.20351 0.94690 0.93199 1.13497 1.18472 0.84012 0.93794 0.96649 1.16809 0.89851 0.78862 1.09603 1.91558 1.80514 1.44292 1.94191 1.21112 0.90752 1.00046 0.97899 1.45891 1.04194 1.07735 1.67677 1.22268 0.90303 0.88875 0.92477 1.61684 1.04999 1.45069 1.15953 1.22208 0.93926 0.93248 0.96929 1.21666 0.99232 1.00741 0.93847 1.21603 0.91743 0.98022 1.02935 1.18679 0.93339 0.96347 0.88069 0.93945 1.21068 1.00080 1.42090 0.92463 0.92722 1.24922 0.97241 0.95447 0.95983 1.69978 1.40108 1.43517 0.98658 0.86654 0.83664 0.80308 0.77820 1.20763 1.21290 1.19903 1.22334 0.84678 0.96235 1.01991 1.20906 0.90955 0.82718 0.77420 1.90833 1.26487 1.70727 1.41866 1.22367 0.89659 0.88277 0.73199 1.90598 1.85801 1.15770 1.31667 0.90649 0.90846 0.90927 0.83825 0.83260 0.87596 0.91008 0.94889 0.92740 0.92084 0.93277 0.90787 0.94691 0.93013 0.91578 0.95597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.39 10.01 36.01 0.36 -0.03 16 2 C -0.10 -0.66 5.88 -104.61 -0.62 -1.27 16 3 C -0.01 -0.11 9.76 -39.19 -0.38 -0.49 16 4 C -0.21 -2.30 6.33 -104.86 -0.66 -2.96 16 5 C 0.17 2.02 6.05 -83.31 -0.50 1.51 16 6 C 0.07 0.73 6.25 -39.21 -0.25 0.49 16 7 F -0.13 -1.48 12.74 2.25 0.03 -1.45 16 8 C -0.08 -0.57 9.65 -39.42 -0.38 -0.96 16 9 N -0.53 -7.53 2.94 -116.75 -0.34 -7.88 16 10 C 0.27 4.07 5.46 -63.32 -0.35 3.72 16 11 N -0.55 -10.06 4.75 -238.58 -1.13 -11.19 16 12 C 0.06 1.10 4.04 -3.84 -0.02 1.08 16 13 C -0.12 -2.24 6.09 -26.66 -0.16 -2.41 16 14 C -0.10 -2.41 5.09 -26.61 -0.14 -2.54 16 15 C 0.05 1.35 2.13 -91.69 -0.19 1.16 16 16 H 0.04 1.20 8.09 -51.93 -0.42 0.78 16 17 C -0.52 -14.10 8.48 -34.45 -0.29 -14.39 16 18 H 0.05 1.46 7.77 -52.49 -0.41 1.06 16 19 C 0.07 1.83 5.22 -17.82 -0.09 1.74 16 20 N -0.88 -25.51 12.19 55.43 0.68 -24.84 16 21 Si 0.89 21.26 29.55 -169.99 -5.02 16.24 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 25 C 0.07 1.53 4.62 -3.83 -0.02 1.51 16 26 C 0.50 7.75 8.16 -11.49 -0.09 7.66 16 27 O -0.43 -8.12 17.69 5.52 0.10 -8.03 16 28 C 0.40 5.31 7.97 -30.89 -0.25 5.06 16 29 O -0.37 -5.50 18.03 5.49 0.10 -5.40 16 30 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.22 8.09 -51.93 -0.42 -0.20 16 32 H 0.07 0.21 8.09 -51.93 -0.42 -0.21 16 33 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.11 1.58 7.54 -51.93 -0.39 1.18 16 36 H 0.07 0.96 6.45 -51.93 -0.33 0.63 16 37 H 0.03 0.55 7.77 -51.93 -0.40 0.15 16 38 H 0.05 0.85 5.02 -51.93 -0.26 0.59 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.07 1.90 6.99 -51.93 -0.36 1.54 16 42 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.07 1.38 7.91 -51.93 -0.41 0.97 16 45 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 369.26 15.07 5.56 5.56 Total: -1.00 -31.44 369.26 -9.99 -41.43 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -5.93 Total: -3.33 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -4.03 Total: -1.12 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: -0.80 Total: -43.91 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: 0.20 Total: -13.42 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.03 Total: -1.45 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.44 -9.99 -41.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853525929.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.441 kcal (2) G-P(sol) polarization free energy of solvation -31.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds