Wall clock time and date at job start Sat Apr 11 2020 07:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47338 * 2 1 4 4 N 1.46507 * 109.47012 * 239.99928 * 2 1 3 5 5 C 1.36937 * 119.99986 * 85.00317 * 4 2 1 6 6 H 1.08005 * 119.99866 * 359.97438 * 5 4 2 7 7 C 1.38806 * 120.00039 * 179.97438 * 5 4 2 8 8 N 1.31621 * 120.00131 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00101 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46703 * 60.00446 * 9 7 5 11 11 H 1.48496 * 109.47147 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47078 * 300.00709 * 9 7 5 13 13 C 1.52998 * 109.47133 * 120.00328 * 2 1 3 14 14 H 1.08998 * 109.50905 * 300.09843 * 13 2 1 15 15 C 1.53292 * 109.51511 * 179.97438 * 13 2 1 16 16 N 1.47146 * 108.38888 * 187.76961 * 15 13 2 17 17 C 1.34777 * 120.98635 * 230.51541 * 16 15 13 18 18 O 1.21572 * 119.99855 * 356.26744 * 17 16 15 19 19 C 1.47701 * 119.99900 * 176.54350 * 17 16 15 20 20 C 1.41599 * 120.03258 * 47.13262 * 19 17 16 21 21 C 1.35779 * 119.54724 * 179.67908 * 20 19 17 22 22 C 1.40861 * 119.38747 * 0.62126 * 21 20 19 23 23 N 1.32490 * 133.41457 * 179.69662 * 22 21 20 24 24 N 1.28537 * 110.24190 * 179.97438 * 23 22 21 25 25 N 1.28984 * 110.84133 * 359.97438 * 24 23 22 26 26 N 1.36929 * 119.93560 * 359.64213 * 22 21 20 27 27 C 1.35495 * 120.84363 * 0.04007 * 26 22 21 28 28 C 1.47159 * 118.03325 * 50.78423 * 16 15 13 29 29 C 1.53714 * 108.16260 * 309.16056 * 28 16 15 30 30 O 1.42957 * 109.51444 * 60.25115 * 13 2 1 31 31 H 1.08996 * 109.47351 * 300.00168 * 1 2 3 32 32 H 1.09004 * 109.46956 * 60.00136 * 1 2 3 33 33 H 1.09002 * 109.47338 * 179.97438 * 1 2 3 34 34 H 0.97001 * 119.99805 * 264.99590 * 4 2 1 35 35 H 0.96997 * 120.00082 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.68116 * 68.04793 * 15 13 2 37 37 H 1.09004 * 109.71236 * 307.51429 * 15 13 2 38 38 H 1.07996 * 120.22369 * 359.97144 * 20 19 17 39 39 H 1.07998 * 120.30514 * 180.28775 * 21 20 19 40 40 H 1.08001 * 119.83072 * 180.02562 * 27 26 22 41 41 H 1.08998 * 109.68168 * 68.94133 * 28 16 15 42 42 H 1.09003 * 109.67911 * 189.49406 * 28 16 15 43 43 H 1.09006 * 109.65731 * 292.57047 * 29 28 16 44 44 H 1.08996 * 109.48721 * 172.40020 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1491 -0.0075 -2.3758 6 1 1.8919 1.0403 -2.4244 7 6 2.6123 -0.6617 -3.5090 8 7 2.9253 -1.9388 -3.4500 9 14 2.7901 0.2700 -5.1183 10 1 3.7446 1.3930 -4.9371 11 1 3.2991 -0.6484 -6.1684 12 1 1.4674 0.8059 -5.5288 13 6 2.0400 -0.7213 1.2492 14 1 1.6755 -0.2090 2.1396 15 6 3.5729 -0.7225 1.2499 16 7 4.0359 -1.5779 2.3539 17 6 4.9519 -1.1350 3.2378 18 8 5.4584 -0.0396 3.0907 19 6 5.3449 -1.9828 4.3815 20 6 5.6617 -3.3476 4.1762 21 6 6.0281 -4.1164 5.2337 22 6 6.0740 -3.5452 6.5205 23 7 6.3792 -4.0225 7.7182 24 7 6.2734 -3.0984 8.6053 25 7 5.9036 -1.9859 8.0674 26 7 5.7576 -2.2243 6.6935 27 6 5.3979 -1.4523 5.6397 28 6 3.4737 -2.9337 2.4610 29 6 1.9417 -2.8229 2.4045 30 8 1.5688 -2.0710 1.2471 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 2.2490 -1.6318 -1.1526 35 1 3.2486 -2.3961 -4.2419 36 1 3.9407 0.2935 1.3936 37 1 3.9407 -1.1153 0.3019 38 1 5.6168 -3.7728 3.1845 39 1 6.2768 -5.1575 5.0903 40 1 5.1521 -0.4122 5.7947 41 1 3.8312 -3.5457 1.6329 42 1 3.7759 -3.3827 3.4072 43 1 1.5772 -2.3188 3.2996 44 1 1.5069 -3.8207 2.3461 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717618068.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:47:50 Heat of formation + Delta-G solvation = 105.331806 kcal Electronic energy + Delta-G solvation = -30437.787655 eV Core-core repulsion = 26201.853629 eV Total energy + Delta-G solvation = -4235.934026 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.154 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.91005 -40.97716 -39.22502 -38.22697 -35.75281 -34.95089 -34.49342 -32.81702 -32.30957 -31.13352 -30.35864 -28.50062 -28.11284 -25.92411 -25.10950 -24.16015 -23.61232 -23.35360 -22.69008 -20.35540 -19.80937 -19.29365 -18.11402 -17.62617 -17.42605 -17.22276 -16.73480 -16.14986 -15.81718 -15.61287 -15.10192 -14.95351 -14.77899 -14.40254 -14.12994 -13.85137 -13.67417 -13.44762 -13.34642 -13.10552 -13.00006 -12.59040 -12.40704 -12.29115 -12.00616 -11.89820 -11.56511 -11.53729 -11.31018 -10.92605 -10.84705 -10.74071 -10.61944 -10.48551 -10.28999 -10.03789 -9.99540 -9.65798 -9.22484 -8.99581 -8.65115 -7.00341 -5.80588 -3.09300 -0.35974 -0.12950 1.06306 1.51107 2.13360 2.44355 2.63821 3.10370 3.41232 3.46497 3.46592 3.46997 3.78043 3.79845 3.83624 4.24403 4.31564 4.54364 4.56888 4.71670 4.74637 4.90341 4.97477 5.04062 5.08363 5.13065 5.20784 5.31786 5.36266 5.52408 5.53577 5.58747 5.64031 5.70779 5.87715 6.04185 6.13041 6.29905 6.35338 6.56674 6.69482 6.98355 7.05131 7.31245 7.65877 7.66340 7.85178 8.37766 9.50353 10.05786 10.43004 11.41459 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.021220 B = 0.002417 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.177528 B =11584.105075 C =11830.128280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.182 3.818 3 H 0.061 0.939 4 N -0.717 5.717 5 C -0.241 4.241 6 H 0.070 0.930 7 C -0.010 4.010 8 N -0.930 5.930 9 Si 0.905 3.095 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.287 1.287 13 C 0.078 3.922 14 H 0.056 0.944 15 C 0.086 3.914 16 N -0.597 5.597 17 C 0.568 3.432 18 O -0.520 6.520 19 C -0.138 4.138 20 C -0.036 4.036 21 C -0.091 4.091 22 C 0.250 3.750 23 N -0.322 5.322 24 N -0.004 5.004 25 N -0.103 5.103 26 N -0.304 5.304 27 C 0.166 3.834 28 C 0.059 3.941 29 C 0.048 3.952 30 O -0.355 6.355 31 H 0.032 0.968 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.390 0.610 35 H 0.255 0.745 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.169 0.831 39 H 0.176 0.824 40 H 0.191 0.809 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.050 0.950 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.290 -4.879 17.513 18.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.072 3.928 3 H 0.079 0.921 4 N -0.359 5.359 5 C -0.372 4.372 6 H 0.087 0.913 7 C -0.207 4.207 8 N -0.578 5.578 9 Si 0.736 3.264 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.213 1.213 13 C 0.018 3.982 14 H 0.074 0.926 15 C -0.035 4.035 16 N -0.330 5.330 17 C 0.353 3.647 18 O -0.396 6.396 19 C -0.147 4.147 20 C -0.063 4.063 21 C -0.114 4.114 22 C -0.004 4.004 23 N -0.181 5.181 24 N 0.003 4.997 25 N -0.086 5.086 26 N -0.083 5.083 27 C 0.037 3.963 28 C -0.064 4.064 29 C -0.030 4.030 30 O -0.273 6.273 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.225 0.775 35 H 0.065 0.935 36 H 0.118 0.882 37 H 0.123 0.877 38 H 0.186 0.814 39 H 0.193 0.807 40 H 0.208 0.792 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.068 0.932 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.706 -4.171 18.802 19.448 hybrid contribution 0.126 0.326 -1.568 1.607 sum 2.832 -3.845 17.233 17.883 Atomic orbital electron populations 1.22357 0.98438 1.01608 0.99725 1.20261 0.92838 0.94666 0.85078 0.92123 1.42372 1.77695 1.10980 1.04889 1.19185 1.36754 0.93825 0.87438 0.91253 1.24709 1.02100 0.95918 0.97938 1.69651 1.50654 1.08585 1.28949 0.86309 0.77772 0.78636 0.83688 1.21282 1.21768 1.21329 1.22958 0.91852 0.83461 0.99904 0.92561 1.22605 0.95185 0.96434 0.89316 1.48128 1.40535 1.15755 1.28557 1.17543 0.79971 0.85650 0.81517 1.90884 1.53099 1.20895 1.74706 1.19748 1.06113 0.95614 0.93237 1.21620 0.92423 0.91196 1.01012 1.20360 1.02423 1.02720 0.85921 1.23127 0.97217 0.82794 0.97309 1.75203 1.25181 1.22778 0.94955 1.77903 1.05908 0.93614 1.22310 1.82898 1.26090 1.17959 0.81687 1.48796 1.41039 1.09780 1.08639 1.21566 0.94105 0.97878 0.82795 1.22987 0.96222 0.83741 1.03475 1.22970 0.92413 0.97905 0.89747 1.88144 1.75262 1.23471 1.40445 0.94853 0.92670 0.92526 0.77529 0.93509 0.88165 0.87742 0.81375 0.80666 0.79182 0.88951 0.89044 0.93166 0.87633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 9.35 37.16 0.35 -2.39 16 2 C 0.18 3.27 2.73 -67.93 -0.19 3.08 16 3 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 4 N -0.72 -16.35 4.29 -53.42 -0.23 -16.58 16 5 C -0.24 -6.25 9.93 -15.06 -0.15 -6.40 16 6 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 7 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 8 N -0.93 -26.65 13.06 55.49 0.72 -25.92 16 9 Si 0.90 21.58 29.55 -169.99 -5.02 16.55 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 C 0.08 1.13 2.53 -26.58 -0.07 1.06 16 14 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 15 C 0.09 1.24 5.85 -3.54 -0.02 1.22 16 16 N -0.60 -6.63 3.01 -173.18 -0.52 -7.15 16 17 C 0.57 6.30 7.27 -12.39 -0.09 6.21 16 18 O -0.52 -7.70 16.49 5.30 0.09 -7.61 16 19 C -0.14 -1.09 5.07 -105.33 -0.53 -1.63 16 20 C -0.04 -0.20 7.36 -39.18 -0.29 -0.49 16 21 C -0.09 -0.51 10.09 -39.47 -0.40 -0.91 16 22 C 0.25 2.36 8.02 -156.27 -1.25 1.10 16 23 N -0.32 -3.82 12.26 31.10 0.38 -3.43 16 24 N 0.00 -0.05 13.35 60.35 0.81 0.75 16 25 N -0.10 -1.25 13.99 60.35 0.84 -0.41 16 26 N -0.30 -3.03 3.92 -12.06 -0.05 -3.08 16 27 C 0.17 1.36 10.84 -16.51 -0.18 1.18 16 28 C 0.06 0.48 5.39 -3.31 -0.02 0.46 16 29 C 0.05 0.46 7.00 37.53 0.26 0.72 16 30 O -0.36 -5.13 9.22 -35.23 -0.32 -5.46 16 31 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 1.01 7.69 -51.93 -0.40 0.61 16 34 H 0.39 9.59 7.20 -40.82 -0.29 9.29 16 35 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.10 1.52 7.11 -51.93 -0.37 1.15 16 37 H 0.10 1.83 7.27 -51.93 -0.38 1.46 16 38 H 0.17 0.57 6.80 -52.49 -0.36 0.21 16 39 H 0.18 0.47 8.06 -52.49 -0.42 0.04 16 40 H 0.19 1.30 8.06 -52.49 -0.42 0.88 16 41 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.09 0.47 4.59 -51.93 -0.24 0.23 16 43 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 367.23 15.07 5.53 5.53 Total: -1.00 -33.14 367.23 -5.82 -38.96 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -5.38 Total: 5.00 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -2.67 Total: 2.84 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: 1.96 Total: -55.82 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -0.24 Total: -13.07 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.14 -5.82 -38.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717618068.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.291 kcal (2) G-P(sol) polarization free energy of solvation -33.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds