Wall clock time and date at job start Sat Apr 11 2020 07:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47420 * 2 1 4 4 C 1.50699 * 109.47369 * 119.99757 * 2 1 3 5 5 O 1.21277 * 120.00620 * 119.99796 * 4 2 1 6 6 N 1.34780 * 119.99786 * 300.00156 * 4 2 1 7 7 C 1.46496 * 120.00061 * 179.97438 * 6 4 2 8 8 C 1.50700 * 109.47151 * 180.02562 * 7 6 4 9 9 C 1.38221 * 120.01073 * 260.01872 * 8 7 6 10 10 C 1.38220 * 120.02576 * 179.72487 * 9 8 7 11 11 C 1.38277 * 120.04953 * 0.51339 * 10 9 8 12 12 C 1.50700 * 119.98580 * 179.77046 * 11 10 9 13 13 N 1.46498 * 109.46769 * 269.71637 * 12 11 10 14 14 C 1.36943 * 119.99752 * 179.72432 * 13 12 11 15 15 H 1.08002 * 119.99793 * 0.27665 * 14 13 12 16 16 C 1.38811 * 120.00012 * 180.27737 * 14 13 12 17 17 N 1.31611 * 120.00081 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99814 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47483 * 90.00178 * 18 16 14 20 20 H 1.48498 * 109.47011 * 210.00042 * 18 16 14 21 21 H 1.48502 * 109.47495 * 329.99664 * 18 16 14 22 22 C 1.38170 * 120.02576 * 359.48562 * 11 10 9 23 23 C 1.38441 * 120.01389 * 80.00236 * 8 7 6 24 24 F 1.35100 * 120.02602 * 359.97438 * 23 8 7 25 25 C 1.50700 * 109.47309 * 239.99721 * 2 1 3 26 26 C 1.34511 * 125.79074 * 119.99741 * 25 2 1 27 27 C 1.41378 * 106.84126 * 180.02562 * 26 25 2 28 28 C 1.34509 * 106.84164 * 0.02562 * 27 26 25 29 29 O 1.34304 * 108.42171 * 359.73477 * 28 27 26 30 30 H 1.09004 * 109.46717 * 60.00159 * 1 2 3 31 31 H 1.08995 * 109.47058 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47247 * 300.00408 * 1 2 3 33 33 H 0.97003 * 120.00316 * 359.97438 * 6 4 2 34 34 H 1.09000 * 109.47450 * 60.00120 * 7 6 4 35 35 H 1.09004 * 109.47141 * 299.99581 * 7 6 4 36 36 H 1.07997 * 119.98840 * 359.97438 * 9 8 7 37 37 H 1.07998 * 119.98077 * 180.25523 * 10 9 8 38 38 H 1.09004 * 109.47210 * 149.71995 * 12 11 10 39 39 H 1.08994 * 109.47121 * 29.71965 * 12 11 10 40 40 H 0.97001 * 120.00384 * 0.02562 * 13 12 11 41 41 H 0.97008 * 120.00329 * 179.97438 * 17 16 14 42 42 H 1.07998 * 120.01636 * 180.23671 * 22 11 10 43 43 H 1.08000 * 126.57914 * 359.97142 * 26 25 2 44 44 H 1.08002 * 126.58277 * 180.02562 * 27 26 25 45 45 H 1.08007 * 125.78880 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.7296 -1.6964 1.1193 6 7 1.7067 -0.2498 2.4546 7 6 2.1946 -0.9406 3.6508 8 6 1.6918 -0.2304 4.8812 9 6 2.5214 0.6376 5.5659 10 6 2.0587 1.2935 6.6912 11 6 0.7692 1.0740 7.1394 12 6 0.2679 1.7859 8.3694 13 7 0.5502 0.9715 9.5540 14 6 0.1880 1.4208 10.7959 15 1 -0.3097 2.3734 10.9015 16 6 0.4607 0.6518 11.9189 17 7 0.1121 1.0833 13.1124 18 14 1.3222 -0.9955 11.7361 19 1 2.7916 -0.7978 11.8208 20 1 0.8821 -1.9075 12.8223 21 1 0.9779 -1.5910 10.4200 22 6 -0.0619 0.2068 6.4565 23 6 0.3988 -0.4469 5.3259 24 9 -0.4132 -1.2945 4.6570 25 6 2.0323 -0.7105 -1.2304 26 6 2.8089 -0.1721 -2.1877 27 6 3.0378 -1.1849 -3.1472 28 6 2.3869 -2.2814 -2.7192 29 8 1.7842 -1.9899 -1.5549 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.1493 0.5391 2.5436 34 1 3.2846 -0.9410 3.6510 35 1 1.8308 -1.9682 3.6507 36 1 3.5302 0.8065 5.2192 37 1 2.7062 1.9747 7.2232 38 1 -0.8073 1.9440 8.2849 39 1 0.7704 2.7487 8.4621 40 1 0.9976 0.1161 9.4591 41 1 0.3023 0.5458 13.8972 42 1 -1.0703 0.0384 6.8045 43 1 3.1847 0.8400 -2.2180 44 1 3.6229 -1.0953 -4.0506 45 1 2.3581 -3.2360 -3.2236 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001718037171.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:48:00 Heat of formation + Delta-G solvation = -29.711175 kcal Electronic energy + Delta-G solvation = -28748.047465 eV Core-core repulsion = 24454.044823 eV Total energy + Delta-G solvation = -4294.002642 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.96671 -42.87390 -40.17443 -39.24893 -35.80461 -34.75441 -34.46240 -33.14711 -32.19373 -30.81239 -30.49516 -28.96763 -27.53656 -25.29015 -24.26919 -22.94401 -22.25615 -22.06195 -21.47021 -20.93887 -20.21636 -18.19350 -17.98828 -17.34274 -16.78055 -16.70670 -16.41187 -16.14688 -15.69924 -15.55590 -15.27666 -14.68348 -14.65676 -14.35682 -14.21518 -13.88107 -13.66518 -13.47197 -13.24036 -13.09605 -13.04121 -12.93872 -12.72716 -12.44072 -12.26648 -12.11327 -12.03345 -12.00863 -11.64822 -11.42617 -10.92452 -10.76866 -10.26661 -10.21524 -10.13858 -9.67526 -9.42366 -9.00916 -8.99269 -8.78980 -8.67307 -7.34801 -5.84478 -3.21850 0.93719 1.15701 1.43791 2.27513 2.30617 2.66915 2.91611 3.33525 3.37271 3.41630 3.55036 4.07932 4.13448 4.25557 4.36853 4.48632 4.52960 4.61007 4.62856 4.76659 4.84744 4.92311 5.01712 5.12900 5.22569 5.29951 5.39440 5.43404 5.45446 5.50839 5.56326 5.59981 5.62827 5.77434 5.79831 5.92024 5.98767 6.01577 6.18867 6.20032 6.22890 6.37242 6.73710 6.83288 6.87061 7.11811 7.85538 7.89053 8.33549 9.11260 9.83415 10.01973 11.33287 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.029512 B = 0.001830 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.531278 B =15299.719958 C =15440.426838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.029 4.029 3 H 0.126 0.874 4 C 0.516 3.484 5 O -0.526 6.526 6 N -0.722 5.722 7 C 0.168 3.832 8 C -0.157 4.157 9 C -0.075 4.075 10 C -0.117 4.117 11 C -0.043 4.043 12 C 0.189 3.811 13 N -0.750 5.750 14 C -0.250 4.250 15 H 0.092 0.908 16 C 0.009 3.991 17 N -0.930 5.930 18 Si 0.882 3.118 19 H -0.283 1.283 20 H -0.289 1.289 21 H -0.277 1.277 22 C -0.141 4.141 23 C 0.111 3.889 24 F -0.138 7.138 25 C 0.012 3.988 26 C -0.207 4.207 27 C -0.217 4.217 28 C -0.037 4.037 29 O -0.160 6.160 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.403 0.597 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.040 0.960 39 H 0.043 0.957 40 H 0.363 0.637 41 H 0.261 0.739 42 H 0.139 0.861 43 H 0.147 0.853 44 H 0.147 0.853 45 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.664 -0.511 -32.371 32.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.050 4.050 3 H 0.144 0.856 4 C 0.301 3.699 5 O -0.401 6.401 6 N -0.374 5.374 7 C 0.045 3.955 8 C -0.159 4.159 9 C -0.094 4.094 10 C -0.135 4.135 11 C -0.043 4.043 12 C 0.062 3.938 13 N -0.396 5.396 14 C -0.380 4.380 15 H 0.110 0.890 16 C -0.187 4.187 17 N -0.578 5.578 18 Si 0.712 3.288 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.203 1.203 22 C -0.160 4.160 23 C 0.091 3.909 24 F -0.116 7.116 25 C -0.040 4.040 26 C -0.226 4.226 27 C -0.236 4.236 28 C -0.105 4.105 29 O -0.055 6.055 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.237 0.763 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.150 0.850 37 H 0.153 0.847 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.196 0.804 41 H 0.071 0.929 42 H 0.157 0.843 43 H 0.165 0.835 44 H 0.165 0.835 45 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 3.866 -1.328 -32.088 32.347 hybrid contribution 0.396 -0.946 -0.140 1.035 sum 4.262 -2.274 -32.228 32.588 Atomic orbital electron populations 1.21830 0.91092 1.03915 1.03551 1.19890 0.98347 0.99247 0.87508 0.85608 1.20393 0.80467 0.84795 0.84213 1.90757 1.37160 1.25669 1.86523 1.46026 1.54057 1.32273 1.05060 1.20049 0.99464 0.95674 0.80299 1.19756 0.93615 1.02842 0.99661 1.20941 0.99209 0.94474 0.94736 1.21260 0.95626 1.00440 0.96208 1.20315 0.93275 0.94732 0.96027 1.19699 0.98197 0.93317 0.82550 1.42663 1.73009 1.21477 1.02442 1.19034 1.32794 1.04365 0.81786 0.88992 1.24652 1.00711 0.98268 0.95084 1.69693 1.52035 1.38657 0.97372 0.86582 0.79941 0.85122 0.77114 1.20916 1.21563 1.20285 1.21181 1.02049 0.98184 0.94603 1.17546 0.88340 0.92133 0.92862 1.91497 1.72230 1.68424 1.79471 1.21502 1.02079 0.82870 0.97508 1.21538 1.03531 1.01380 0.96125 1.21778 1.05718 0.93605 1.02472 1.24052 0.99036 1.00820 0.86590 1.84037 1.59265 1.27430 1.34758 0.90675 0.91281 0.90893 0.76276 0.90032 0.90345 0.84963 0.84711 0.94214 0.93965 0.80391 0.92910 0.84270 0.83491 0.83476 0.78189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.07 37.16 0.34 -0.54 16 2 C -0.03 -0.22 3.13 -92.93 -0.29 -0.51 16 3 H 0.13 0.58 8.10 -51.93 -0.42 0.16 16 4 C 0.52 5.43 7.15 -10.98 -0.08 5.35 16 5 O -0.53 -7.85 15.79 -1.57 -0.02 -7.88 16 6 N -0.72 -6.40 5.44 -61.47 -0.33 -6.74 16 7 C 0.17 1.74 5.52 -5.20 -0.03 1.71 16 8 C -0.16 -1.73 5.25 -104.55 -0.55 -2.28 16 9 C -0.08 -0.79 9.67 -39.59 -0.38 -1.17 16 10 C -0.12 -1.45 9.70 -39.57 -0.38 -1.84 16 11 C -0.04 -0.62 5.25 -104.63 -0.55 -1.17 16 12 C 0.19 3.37 6.38 -5.19 -0.03 3.34 16 13 N -0.75 -17.15 5.40 -61.09 -0.33 -17.48 16 14 C -0.25 -6.88 10.47 -15.06 -0.16 -7.04 16 15 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 16 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 17 N -0.93 -28.70 13.97 55.49 0.78 -27.92 16 18 Si 0.88 21.86 27.74 -169.99 -4.71 17.15 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 22 C -0.14 -1.95 9.68 -39.51 -0.38 -2.33 16 23 C 0.11 1.41 7.25 -39.41 -0.29 1.12 16 24 F -0.14 -1.82 16.66 2.25 0.04 -1.78 16 25 C 0.01 0.11 5.20 -35.63 -0.19 -0.07 16 26 C -0.21 -1.81 10.78 -39.71 -0.43 -2.23 16 27 C -0.22 -1.78 10.91 -39.71 -0.43 -2.21 16 28 C -0.04 -0.32 12.09 29.41 0.36 0.04 16 29 O -0.16 -1.81 10.34 -1.42 -0.01 -1.82 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.33 7.57 -51.93 -0.39 -0.06 16 33 H 0.40 2.67 7.88 -40.82 -0.32 2.35 16 34 H 0.08 0.82 8.01 -51.93 -0.42 0.40 16 35 H 0.08 0.93 7.95 -51.93 -0.41 0.52 16 36 H 0.13 1.08 8.04 -52.49 -0.42 0.65 16 37 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 38 H 0.04 0.71 8.09 -51.93 -0.42 0.29 16 39 H 0.04 0.74 8.08 -51.93 -0.42 0.32 16 40 H 0.36 8.28 5.52 -40.82 -0.23 8.06 16 41 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 42 H 0.14 1.90 8.06 -52.49 -0.42 1.48 16 43 H 0.15 0.95 8.06 -52.49 -0.42 0.52 16 44 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 45 H 0.20 0.97 8.06 -52.48 -0.42 0.55 16 LS Contribution 391.25 15.07 5.90 5.90 Total: -1.00 -35.07 391.25 -8.28 -43.35 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -6.00 Total: 6.89 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -3.57 Total: -9.67 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: 0.11 Total: -52.13 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -0.04 Total: -9.70 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.15 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.07 -8.28 -43.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718037171.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.639 kcal (2) G-P(sol) polarization free energy of solvation -35.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds