Wall clock time and date at job start Sat Apr 11 2020 07:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47420 * 2 1 4 4 C 1.50699 * 109.47369 * 119.99757 * 2 1 3 5 5 O 1.21277 * 120.00620 * 119.99796 * 4 2 1 6 6 N 1.34780 * 119.99786 * 300.00156 * 4 2 1 7 7 C 1.46496 * 120.00061 * 179.97438 * 6 4 2 8 8 C 1.50700 * 109.47151 * 180.02562 * 7 6 4 9 9 C 1.38221 * 120.01073 * 260.01872 * 8 7 6 10 10 C 1.38220 * 120.02576 * 179.72487 * 9 8 7 11 11 C 1.38277 * 120.04953 * 0.51339 * 10 9 8 12 12 C 1.50700 * 119.98580 * 179.77046 * 11 10 9 13 13 N 1.46498 * 109.46769 * 269.71637 * 12 11 10 14 14 C 1.36943 * 119.99752 * 179.72432 * 13 12 11 15 15 H 1.08002 * 119.99793 * 0.27665 * 14 13 12 16 16 C 1.38811 * 120.00012 * 180.27737 * 14 13 12 17 17 N 1.31611 * 120.00081 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99814 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47483 * 90.00178 * 18 16 14 20 20 H 1.48498 * 109.47011 * 210.00042 * 18 16 14 21 21 H 1.48502 * 109.47495 * 329.99664 * 18 16 14 22 22 C 1.38170 * 120.02576 * 359.48562 * 11 10 9 23 23 C 1.38441 * 120.01389 * 80.00236 * 8 7 6 24 24 F 1.35100 * 120.02602 * 359.97438 * 23 8 7 25 25 C 1.50700 * 109.47309 * 239.99721 * 2 1 3 26 26 C 1.34511 * 125.79074 * 119.99741 * 25 2 1 27 27 C 1.41378 * 106.84126 * 180.02562 * 26 25 2 28 28 C 1.34509 * 106.84164 * 0.02562 * 27 26 25 29 29 O 1.34304 * 108.42171 * 359.73477 * 28 27 26 30 30 H 1.09004 * 109.46717 * 60.00159 * 1 2 3 31 31 H 1.08995 * 109.47058 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47247 * 300.00408 * 1 2 3 33 33 H 0.97003 * 120.00316 * 359.97438 * 6 4 2 34 34 H 1.09000 * 109.47450 * 60.00120 * 7 6 4 35 35 H 1.09004 * 109.47141 * 299.99581 * 7 6 4 36 36 H 1.07997 * 119.98840 * 359.97438 * 9 8 7 37 37 H 1.07998 * 119.98077 * 180.25523 * 10 9 8 38 38 H 1.09004 * 109.47210 * 149.71995 * 12 11 10 39 39 H 1.08994 * 109.47121 * 29.71965 * 12 11 10 40 40 H 0.97001 * 120.00384 * 0.02562 * 13 12 11 41 41 H 0.97008 * 120.00329 * 179.97438 * 17 16 14 42 42 H 1.07998 * 120.01636 * 180.23671 * 22 11 10 43 43 H 1.08000 * 126.57914 * 359.97142 * 26 25 2 44 44 H 1.08002 * 126.58277 * 180.02562 * 27 26 25 45 45 H 1.08007 * 125.78880 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.7296 -1.6964 1.1193 6 7 1.7067 -0.2498 2.4546 7 6 2.1946 -0.9406 3.6508 8 6 1.6918 -0.2304 4.8812 9 6 2.5214 0.6376 5.5659 10 6 2.0587 1.2935 6.6912 11 6 0.7692 1.0740 7.1394 12 6 0.2679 1.7859 8.3694 13 7 0.5502 0.9715 9.5540 14 6 0.1880 1.4208 10.7959 15 1 -0.3097 2.3734 10.9015 16 6 0.4607 0.6518 11.9189 17 7 0.1121 1.0833 13.1124 18 14 1.3222 -0.9955 11.7361 19 1 2.7916 -0.7978 11.8208 20 1 0.8821 -1.9075 12.8223 21 1 0.9779 -1.5910 10.4200 22 6 -0.0619 0.2068 6.4565 23 6 0.3988 -0.4469 5.3259 24 9 -0.4132 -1.2945 4.6570 25 6 2.0323 -0.7105 -1.2304 26 6 2.8089 -0.1721 -2.1877 27 6 3.0378 -1.1849 -3.1472 28 6 2.3869 -2.2814 -2.7192 29 8 1.7842 -1.9899 -1.5549 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.1493 0.5391 2.5436 34 1 3.2846 -0.9410 3.6510 35 1 1.8308 -1.9682 3.6507 36 1 3.5302 0.8065 5.2192 37 1 2.7062 1.9747 7.2232 38 1 -0.8073 1.9440 8.2849 39 1 0.7704 2.7487 8.4621 40 1 0.9976 0.1161 9.4591 41 1 0.3023 0.5458 13.8972 42 1 -1.0703 0.0384 6.8045 43 1 3.1847 0.8400 -2.2180 44 1 3.6229 -1.0953 -4.0506 45 1 2.3581 -3.2360 -3.2236 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001718037171.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:47:59 Heat of formation + Delta-G solvation = -51.944669 kcal Electronic energy + Delta-G solvation = -28749.011581 eV Core-core repulsion = 24454.044823 eV Total energy + Delta-G solvation = -4294.966758 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.98360 -43.51247 -41.02149 -40.24195 -37.10359 -35.91485 -35.29562 -33.88993 -33.71310 -32.25109 -31.53693 -29.62451 -28.72800 -26.35474 -25.21481 -24.03250 -23.78016 -22.70335 -22.27172 -22.02051 -20.91059 -19.94538 -18.86659 -18.03530 -17.91190 -17.70635 -17.24472 -16.87161 -16.73712 -16.53553 -16.43693 -16.18758 -15.69501 -15.31178 -15.09736 -15.03794 -14.87007 -14.54315 -14.35712 -14.07201 -13.97025 -13.69082 -13.62160 -13.49251 -13.32955 -13.31379 -13.01766 -12.84883 -12.65551 -12.56307 -12.51790 -12.19841 -11.93206 -11.79843 -11.06515 -11.03570 -10.80308 -10.24594 -9.99090 -9.70212 -9.38978 -9.34092 -8.04541 -5.38751 -0.05834 0.18574 0.79333 1.37619 1.39250 1.46590 1.50321 1.69052 2.07699 2.17372 2.46241 2.58934 3.14052 3.27564 3.40472 3.51751 3.65524 3.70903 3.80794 3.90645 3.96428 4.09616 4.11594 4.21475 4.28946 4.32348 4.48998 4.54933 4.70035 4.71994 4.76652 4.78921 4.94297 4.95571 5.01892 5.02352 5.12018 5.13035 5.21919 5.25544 5.29538 5.59545 5.63349 5.73761 5.83896 6.18663 6.24879 6.41099 7.04802 7.11124 7.79363 7.98083 9.16455 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.029512 B = 0.001830 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.531278 B =15299.719958 C =15440.426838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.023 4.023 3 H 0.161 0.839 4 C 0.515 3.485 5 O -0.575 6.575 6 N -0.710 5.710 7 C 0.170 3.830 8 C -0.140 4.140 9 C -0.061 4.061 10 C -0.113 4.113 11 C -0.058 4.058 12 C 0.188 3.812 13 N -0.753 5.753 14 C -0.236 4.236 15 H 0.063 0.937 16 C -0.058 4.058 17 N -0.980 5.980 18 Si 0.950 3.050 19 H -0.275 1.275 20 H -0.296 1.296 21 H -0.258 1.258 22 C -0.148 4.148 23 C 0.104 3.896 24 F -0.143 7.143 25 C -0.014 4.014 26 C -0.212 4.212 27 C -0.226 4.226 28 C -0.051 4.051 29 O -0.190 6.190 30 H 0.089 0.911 31 H 0.046 0.954 32 H 0.089 0.911 33 H 0.416 0.584 34 H 0.091 0.909 35 H 0.061 0.939 36 H 0.166 0.834 37 H 0.146 0.854 38 H 0.038 0.962 39 H 0.049 0.951 40 H 0.365 0.635 41 H 0.258 0.742 42 H 0.133 0.867 43 H 0.169 0.831 44 H 0.169 0.831 45 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.172 -0.325 -34.934 35.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.044 4.044 3 H 0.178 0.822 4 C 0.302 3.698 5 O -0.454 6.454 6 N -0.362 5.362 7 C 0.047 3.953 8 C -0.142 4.142 9 C -0.079 4.079 10 C -0.132 4.132 11 C -0.059 4.059 12 C 0.062 3.938 13 N -0.399 5.399 14 C -0.366 4.366 15 H 0.081 0.919 16 C -0.250 4.250 17 N -0.630 5.630 18 Si 0.777 3.223 19 H -0.201 1.201 20 H -0.223 1.223 21 H -0.182 1.182 22 C -0.167 4.167 23 C 0.084 3.916 24 F -0.121 7.121 25 C -0.064 4.064 26 C -0.231 4.231 27 C -0.245 4.245 28 C -0.119 4.119 29 O -0.086 6.086 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.108 0.892 33 H 0.253 0.747 34 H 0.109 0.891 35 H 0.079 0.921 36 H 0.183 0.817 37 H 0.163 0.837 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.198 0.802 41 H 0.067 0.933 42 H 0.151 0.849 43 H 0.186 0.814 44 H 0.186 0.814 45 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 5.353 -1.101 -34.706 35.134 hybrid contribution -0.101 -0.928 0.536 1.076 sum 5.252 -2.028 -34.170 34.630 Atomic orbital electron populations 1.21829 0.90028 1.02966 1.05133 1.20035 0.99088 1.00146 0.85148 0.82208 1.20927 0.79508 0.84141 0.85177 1.90735 1.39550 1.27913 1.87213 1.45904 1.53683 1.32334 1.04310 1.19961 0.99928 0.94871 0.80515 1.19828 0.92765 1.02112 0.99470 1.21215 1.00323 0.92944 0.93393 1.21402 0.94661 1.00474 0.96651 1.19972 0.94581 0.95938 0.95374 1.19770 0.98271 0.93366 0.82355 1.42682 1.72794 1.22078 1.02357 1.19045 1.30818 1.02962 0.83807 0.91898 1.25434 1.02476 1.02345 0.94757 1.69865 1.54440 1.40436 0.98294 0.85488 0.78884 0.80354 0.77537 1.20074 1.22315 1.18242 1.21125 1.01905 0.98523 0.95190 1.17586 0.88951 0.92275 0.92770 1.91488 1.72552 1.68617 1.79492 1.22006 1.03014 0.82729 0.98676 1.21931 1.02885 1.02470 0.95852 1.22158 1.05747 0.93400 1.03188 1.24731 0.98768 1.02271 0.86090 1.84018 1.60180 1.28489 1.35917 0.89204 0.93475 0.89175 0.74716 0.89130 0.92057 0.81681 0.83652 0.94448 0.93279 0.80155 0.93267 0.84912 0.81356 0.81381 0.75624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.07 71.98 0.65 -0.79 16 2 C -0.02 -0.31 3.13 -12.29 -0.04 -0.35 16 3 H 0.16 0.92 8.10 -2.39 -0.02 0.90 16 4 C 0.52 10.08 7.15 87.66 0.63 10.70 16 5 O -0.58 -16.97 15.79 3.80 0.06 -16.91 16 6 N -0.71 -10.94 5.44 -466.79 -2.54 -13.48 16 7 C 0.17 3.15 5.52 85.63 0.47 3.62 16 8 C -0.14 -2.68 5.25 -19.82 -0.10 -2.79 16 9 C -0.06 -1.03 9.67 22.26 0.22 -0.82 16 10 C -0.11 -2.46 9.70 22.27 0.22 -2.25 16 11 C -0.06 -1.58 5.25 -19.87 -0.10 -1.68 16 12 C 0.19 6.54 6.38 85.63 0.55 7.08 16 13 N -0.75 -33.82 5.40 -347.18 -1.87 -35.69 16 14 C -0.24 -13.08 10.47 84.03 0.88 -12.20 16 15 H 0.06 3.79 8.06 -2.91 -0.02 3.76 16 16 C -0.06 -3.38 5.50 84.86 0.47 -2.91 16 17 N -0.98 -61.89 13.97 21.65 0.30 -61.59 16 18 Si 0.95 45.06 27.74 68.60 1.90 46.96 16 19 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 21 H -0.26 -11.24 6.52 99.48 0.65 -10.60 16 22 C -0.15 -3.90 9.68 22.31 0.22 -3.68 16 23 C 0.10 2.44 7.25 22.38 0.16 2.60 16 24 F -0.14 -3.59 16.66 44.97 0.75 -2.84 16 25 C -0.01 -0.26 5.20 24.83 0.13 -0.13 16 26 C -0.21 -3.35 10.78 22.19 0.24 -3.11 16 27 C -0.23 -3.39 10.91 22.19 0.24 -3.15 16 28 C -0.05 -0.84 12.09 66.97 0.81 -0.03 16 29 O -0.19 -4.27 10.34 4.32 0.04 -4.23 16 30 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.09 0.58 7.57 -2.38 -0.02 0.56 16 33 H 0.42 4.24 7.88 -92.71 -0.73 3.51 16 34 H 0.09 1.56 8.01 -2.39 -0.02 1.55 16 35 H 0.06 1.39 7.95 -2.39 -0.02 1.37 16 36 H 0.17 1.82 8.04 -2.91 -0.02 1.79 16 37 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 38 H 0.04 1.32 8.09 -2.38 -0.02 1.30 16 39 H 0.05 1.66 8.08 -2.39 -0.02 1.64 16 40 H 0.37 16.00 5.52 -92.71 -0.51 15.49 16 41 H 0.26 15.58 8.31 -92.70 -0.77 14.80 16 42 H 0.13 3.58 8.06 -2.91 -0.02 3.56 16 43 H 0.17 1.72 8.06 -2.91 -0.02 1.70 16 44 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 45 H 0.23 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -78.09 391.25 4.01 -74.08 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: -0.27 Total: 23.56 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: 5.63 Total: -9.88 kcal Atomic # 7 Polarization: -106.65 SS G_CDS: -4.11 Total: -110.76 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: 0.10 Total: -21.13 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.75 Total: -2.84 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.90 Total: 46.96 kcal Total: -78.09 4.01 -74.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718037171.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.139 kcal (2) G-P(sol) polarization free energy of solvation -78.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds