Wall clock time and date at job start Sat Apr 11 2020 07:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46488 * 2 1 4 4 C 1.53001 * 109.46915 * 120.00114 * 2 1 3 5 5 N 1.46497 * 109.46780 * 175.00212 * 4 2 1 6 6 C 1.34776 * 119.99857 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99836 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00164 * 179.97438 * 6 5 4 9 9 S 1.80999 * 109.47302 * 180.02562 * 8 6 5 10 10 C 1.76201 * 99.99956 * 179.97438 * 9 8 6 11 11 H 1.08004 * 119.99887 * 0.02562 * 10 9 8 12 12 C 1.38793 * 120.00158 * 179.97438 * 10 9 8 13 13 N 1.31638 * 119.99631 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00291 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47239 * 60.00216 * 14 12 10 16 16 H 1.48502 * 109.47489 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47243 * 300.00187 * 14 12 10 18 18 N 1.46494 * 109.46919 * 239.99758 * 2 1 3 19 19 C 1.46495 * 120.00652 * 299.99857 * 18 2 1 20 20 C 1.34780 * 119.99917 * 120.00104 * 18 2 1 21 21 O 1.21277 * 120.00132 * 184.78664 * 20 18 2 22 22 C 1.50708 * 119.99757 * 4.78581 * 20 18 2 23 23 F 1.39892 * 110.01573 * 48.29188 * 22 20 18 24 24 C 1.54269 * 110.03030 * 286.84943 * 22 20 18 25 25 C 1.54886 * 104.19679 * 217.10590 * 24 22 20 26 26 C 1.54887 * 102.74777 * 37.94344 * 25 24 22 27 27 C 1.53871 * 110.03117 * 169.68806 * 22 20 18 28 28 H 1.08999 * 109.47217 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47539 * 300.00156 * 1 2 3 30 30 H 1.08999 * 109.47359 * 59.99973 * 1 2 3 31 31 H 1.08999 * 109.46961 * 54.99976 * 4 2 1 32 32 H 1.09001 * 109.47011 * 294.99521 * 4 2 1 33 33 H 0.96999 * 119.99967 * 359.97438 * 5 4 2 34 34 H 1.08997 * 109.47211 * 300.00726 * 8 6 5 35 35 H 1.09000 * 109.46814 * 60.00354 * 8 6 5 36 36 H 0.97005 * 119.99553 * 180.02562 * 13 12 10 37 37 H 1.09007 * 109.46931 * 93.48512 * 19 18 2 38 38 H 1.09000 * 109.47911 * 213.48799 * 19 18 2 39 39 H 1.09001 * 109.46980 * 333.49219 * 19 18 2 40 40 H 1.08998 * 110.48880 * 335.78884 * 24 22 20 41 41 H 1.09004 * 110.48371 * 98.42958 * 24 22 20 42 42 H 1.09003 * 110.75523 * 279.63105 * 25 24 22 43 43 H 1.08999 * 110.91473 * 156.33441 * 25 24 22 44 44 H 1.08997 * 110.48851 * 203.37654 * 26 25 24 45 45 H 1.08999 * 110.48265 * 80.73790 * 26 25 24 46 46 H 1.09000 * 110.03103 * 238.56771 * 27 22 20 47 47 H 1.08997 * 110.03492 * 0.02562 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1730 -1.4283 2.1912 7 8 3.5699 -1.8833 3.1399 8 6 5.6749 -1.5369 2.1306 9 16 6.2782 -2.3900 3.6085 10 6 8.0099 -2.3784 3.2830 11 1 8.3861 -1.9257 2.3775 12 6 8.8905 -2.9500 4.1908 13 7 8.4320 -3.5013 5.2947 14 14 10.7263 -2.9371 3.8461 15 1 11.1973 -1.5340 3.7244 16 1 11.4441 -3.6056 4.9610 17 1 10.9971 -3.6618 2.5785 18 7 2.0183 -0.6906 -1.1961 19 6 1.6644 -2.0932 -1.4280 20 6 2.7931 -0.0357 -2.0833 21 8 3.1256 -0.5791 -3.1153 22 6 3.2464 1.3720 -1.7929 23 9 3.7644 1.4503 -0.4958 24 6 2.0646 2.3509 -1.9511 25 6 2.7015 3.6180 -2.5736 26 6 3.7435 3.0290 -3.5567 27 6 4.3138 1.8032 -2.8138 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6053 -1.7198 1.2951 32 1 1.7516 -0.1583 2.1370 33 1 3.9823 -0.4627 0.4316 34 1 5.9629 -2.1003 1.2431 35 1 6.1097 -0.5385 2.0840 36 1 9.0475 -3.9005 5.9293 37 1 0.7718 -2.1444 -2.0516 38 1 2.4890 -2.5976 -1.9317 39 1 1.4690 -2.5812 -0.4731 40 1 1.3113 1.9346 -2.6199 41 1 1.6277 2.5815 -0.9794 42 1 3.1903 4.2206 -1.8080 43 1 1.9555 4.2061 -3.1080 44 1 4.5318 3.7546 -3.7569 45 1 3.2614 2.7224 -4.4849 46 1 5.2353 2.0743 -2.2986 47 1 4.5037 0.9946 -3.5196 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001718138620.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:48:09 Heat of formation + Delta-G solvation = -147.058555 kcal Electronic energy + Delta-G solvation = -29589.596204 eV Core-core repulsion = 25425.948949 eV Total energy + Delta-G solvation = -4163.647255 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 346.151 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.24958 -41.45205 -40.54571 -38.42208 -37.71028 -35.19807 -34.60472 -32.59834 -30.90363 -30.57069 -29.89799 -27.76777 -27.73552 -26.81269 -23.66624 -22.11832 -21.95265 -21.79203 -20.32384 -19.78183 -19.06587 -17.92426 -17.79045 -17.36589 -16.90364 -16.87841 -16.73105 -16.37883 -16.09046 -15.96599 -15.84504 -15.24497 -14.94504 -14.69961 -14.54545 -14.36629 -14.20178 -13.98496 -13.92483 -13.57754 -13.31014 -13.20256 -13.17585 -13.06257 -12.88416 -12.72085 -12.60386 -12.57059 -12.32780 -12.16266 -11.91583 -11.80429 -11.76217 -11.51199 -11.15123 -11.02457 -10.88762 -10.33231 -10.16997 -9.95041 -8.69243 -8.36712 -6.15143 1.16908 1.23637 1.42285 1.43615 1.53874 1.55330 1.65506 2.23756 2.26862 2.87776 2.97117 3.16900 3.27232 3.32312 3.46305 3.56487 3.82325 3.94723 4.12062 4.15065 4.20715 4.21758 4.29519 4.34517 4.39153 4.43448 4.53462 4.54010 4.62833 4.64062 4.74487 4.79222 4.85769 4.91611 4.95825 5.05682 5.14636 5.15750 5.23091 5.31013 5.37071 5.39101 5.42903 6.05989 6.17350 6.36987 6.77181 7.04269 7.15156 8.72316 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.013416 B = 0.002845 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.587120 B = 9839.180172 C =10977.222681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.113 3.887 3 H 0.120 0.880 4 C 0.106 3.894 5 N -0.713 5.713 6 C 0.536 3.464 7 O -0.558 6.558 8 C -0.133 4.133 9 S -0.138 6.138 10 C -0.552 4.552 11 H 0.079 0.921 12 C 0.016 3.984 13 N -0.909 5.909 14 Si 0.998 3.002 15 H -0.262 1.262 16 H -0.276 1.276 17 H -0.264 1.264 18 N -0.596 5.596 19 C 0.081 3.919 20 C 0.496 3.504 21 O -0.552 6.552 22 C 0.094 3.906 23 F -0.194 7.194 24 C -0.137 4.137 25 C -0.119 4.119 26 C -0.119 4.119 27 C -0.148 4.148 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.404 0.596 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.272 0.728 37 H 0.076 0.924 38 H 0.057 0.943 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.106 0.894 42 H 0.078 0.922 43 H 0.096 0.904 44 H 0.085 0.915 45 H 0.073 0.927 46 H 0.085 0.915 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.238 16.061 -19.703 31.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.010 3.990 3 H 0.138 0.862 4 C -0.019 4.019 5 N -0.368 5.368 6 C 0.321 3.679 7 O -0.436 6.436 8 C -0.284 4.284 9 S 0.089 5.911 10 C -0.700 4.700 11 H 0.097 0.903 12 C -0.189 4.189 13 N -0.546 5.546 14 Si 0.819 3.181 15 H -0.186 1.186 16 H -0.201 1.201 17 H -0.188 1.188 18 N -0.328 5.328 19 C -0.061 4.061 20 C 0.282 3.718 21 O -0.430 6.430 22 C 0.073 3.927 23 F -0.174 7.174 24 C -0.174 4.174 25 C -0.156 4.156 26 C -0.156 4.156 27 C -0.186 4.186 28 H 0.087 0.913 29 H 0.111 0.889 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.241 0.759 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.101 0.899 40 H 0.112 0.888 41 H 0.124 0.876 42 H 0.097 0.903 43 H 0.115 0.885 44 H 0.104 0.896 45 H 0.092 0.908 46 H 0.103 0.897 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -19.059 14.907 -18.483 30.448 hybrid contribution 2.191 0.009 -1.065 2.436 sum -16.868 14.916 -19.548 29.819 Atomic orbital electron populations 1.22104 0.90580 1.04121 1.04575 1.22000 0.97454 0.97840 0.81712 0.86240 1.21910 0.79192 1.01860 0.98891 1.45835 1.08165 1.59656 1.23112 1.19938 0.88705 0.77094 0.82153 1.90681 1.70215 1.48376 1.34375 1.23377 0.95310 1.05501 1.04232 1.85436 1.05647 1.74918 1.25116 1.23176 0.91875 1.44740 1.10180 0.90271 1.26110 1.05203 0.93660 0.93947 1.70170 1.37519 1.36368 1.10507 0.85017 0.75680 0.79134 0.78255 1.18615 1.20072 1.18841 1.48026 1.49469 1.12948 1.22320 1.21740 1.01382 0.80304 1.02692 1.21153 0.78404 0.88457 0.83736 1.90702 1.57316 1.68320 1.26676 1.22026 0.97656 0.93240 0.79796 1.92837 1.88416 1.96841 1.39343 1.23114 0.94980 0.94868 1.04458 1.22551 0.98437 0.95982 0.98678 1.22357 0.99292 0.95547 0.98439 1.22785 0.97372 1.00661 0.97745 0.91321 0.88935 0.90232 0.91195 0.89629 0.75882 0.88288 0.87753 0.91871 0.90538 0.92453 0.89873 0.88795 0.87613 0.90287 0.88543 0.89600 0.90839 0.89653 0.89969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 9.19 71.98 0.66 -0.58 16 2 C 0.11 1.57 2.05 44.99 0.09 1.66 16 3 H 0.12 1.52 3.44 -2.39 -0.01 1.51 16 4 C 0.11 2.21 4.93 86.38 0.43 2.63 16 5 N -0.71 -19.86 5.33 -463.06 -2.47 -22.33 16 6 C 0.54 20.75 7.85 87.66 0.69 21.43 16 7 O -0.56 -25.91 15.86 -3.04 -0.05 -25.96 16 8 C -0.13 -5.67 6.16 71.24 0.44 -5.24 16 9 S -0.14 -7.88 20.57 -56.49 -1.16 -9.04 16 10 C -0.55 -32.43 9.50 67.95 0.65 -31.79 16 11 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 12 C 0.02 0.92 5.49 84.85 0.47 1.38 16 13 N -0.91 -56.45 13.22 21.65 0.29 -56.16 16 14 Si 1.00 44.41 29.55 68.60 2.03 46.44 16 15 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 16 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 17 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 18 N -0.60 -10.37 2.24 -822.59 -1.85 -12.22 16 19 C 0.08 1.39 9.39 127.77 1.20 2.59 16 20 C 0.50 10.33 6.33 87.66 0.55 10.89 16 21 O -0.55 -15.22 14.96 -3.02 -0.05 -15.26 16 22 C 0.09 1.56 1.08 -10.81 -0.01 1.55 16 23 F -0.19 -3.70 12.48 44.97 0.56 -3.14 16 24 C -0.14 -1.33 5.33 31.67 0.17 -1.16 16 25 C -0.12 -0.96 6.91 31.88 0.22 -0.74 16 26 C -0.12 -1.30 6.83 31.67 0.22 -1.08 16 27 C -0.15 -2.46 6.23 31.32 0.20 -2.27 16 28 H 0.07 0.57 7.67 -2.39 -0.02 0.55 16 29 H 0.09 0.51 8.14 -2.38 -0.02 0.50 16 30 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.07 1.53 6.87 -2.39 -0.02 1.51 16 32 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.40 10.46 5.71 -92.71 -0.53 9.93 16 34 H 0.10 3.97 8.14 -2.40 -0.02 3.95 16 35 H 0.10 4.12 8.14 -2.39 -0.02 4.10 16 36 H 0.27 15.67 8.31 -92.70 -0.77 14.89 16 37 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.06 1.23 7.60 -2.39 -0.02 1.21 16 39 H 0.08 1.33 6.53 -2.39 -0.02 1.32 16 40 H 0.09 0.83 7.85 -2.39 -0.02 0.81 16 41 H 0.11 0.73 6.86 -2.39 -0.02 0.71 16 42 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 44 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.08 1.43 8.02 -2.39 -0.02 1.41 16 47 H 0.08 1.71 6.45 -2.39 -0.02 1.70 16 Total: -1.00 -79.87 387.35 3.72 -76.15 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: 0.46 Total: 22.23 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 5.96 Total: -0.72 kcal Atomic # 7 Polarization: -86.68 SS G_CDS: -4.03 Total: -90.71 kcal Atomic # 8 Polarization: -41.12 SS G_CDS: -0.09 Total: -41.22 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.56 Total: -3.14 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: -7.88 SS G_CDS: -1.16 Total: -9.04 kcal Total: -79.87 3.72 -76.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718138620.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.912 kcal (2) G-P(sol) polarization free energy of solvation -79.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds