Wall clock time and date at job start Sat Apr 11 2020 07:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08994 * 109.47451 * 2 1 4 4 C 1.52995 * 109.47589 * 239.99218 * 2 1 3 5 5 N 1.46498 * 109.47569 * 185.00509 * 4 2 1 6 6 C 1.34774 * 120.00477 * 180.02562 * 5 4 2 7 7 O 1.21288 * 119.99654 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.00532 * 180.02562 * 6 5 4 9 9 S 1.80996 * 109.47347 * 179.97438 * 8 6 5 10 10 C 1.76201 * 99.99862 * 179.97438 * 9 8 6 11 11 H 1.07994 * 120.00340 * 0.02562 * 10 9 8 12 12 C 1.38802 * 119.99917 * 179.97438 * 10 9 8 13 13 N 1.31631 * 119.99804 * 179.97438 * 12 10 9 14 14 Si 1.86795 * 119.99918 * 0.02562 * 12 10 9 15 15 H 1.48507 * 109.47446 * 89.99793 * 14 12 10 16 16 H 1.48507 * 109.47367 * 209.99860 * 14 12 10 17 17 H 1.48504 * 109.47215 * 329.99389 * 14 12 10 18 18 N 1.46503 * 109.46968 * 119.99514 * 2 1 3 19 19 C 1.46503 * 119.99912 * 59.99934 * 18 2 1 20 20 C 1.34773 * 120.00418 * 240.00173 * 18 2 1 21 21 O 1.21284 * 119.99841 * 355.71525 * 20 18 2 22 22 C 1.50706 * 120.00424 * 175.70814 * 20 18 2 23 23 C 1.53002 * 115.54714 * 75.94487 * 22 20 18 24 24 C 1.52999 * 109.47209 * 63.05844 * 23 22 20 25 25 F 1.39898 * 109.47320 * 183.47591 * 24 23 22 26 26 C 1.52998 * 117.49933 * 221.61037 * 22 20 18 27 27 C 1.52997 * 117.49918 * 290.27573 * 22 20 18 28 28 H 1.09003 * 109.47638 * 300.00901 * 1 2 3 29 29 H 1.09011 * 109.46701 * 60.00543 * 1 2 3 30 30 H 1.08994 * 109.47451 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47562 * 305.00399 * 4 2 1 32 32 H 1.08997 * 109.46819 * 65.00308 * 4 2 1 33 33 H 0.97001 * 119.99831 * 359.97438 * 5 4 2 34 34 H 1.09000 * 109.46438 * 299.99642 * 8 6 5 35 35 H 1.09003 * 109.47138 * 59.98736 * 8 6 5 36 36 H 0.96997 * 119.99495 * 179.97438 * 13 12 10 37 37 H 1.09005 * 109.47089 * 275.19608 * 19 18 2 38 38 H 1.08999 * 109.47285 * 35.19664 * 19 18 2 39 39 H 1.09001 * 109.47006 * 155.19847 * 19 18 2 40 40 H 1.08994 * 109.47028 * 183.06135 * 23 22 20 41 41 H 1.09002 * 109.46644 * 303.06015 * 23 22 20 42 42 H 1.09005 * 109.47400 * 303.47894 * 24 23 22 43 43 H 1.08998 * 109.47144 * 63.47436 * 24 23 22 44 44 H 1.08995 * 117.50013 * 214.99839 * 26 22 20 45 45 H 1.09003 * 117.50071 * 0.02765 * 26 22 20 46 46 H 1.09001 * 117.49639 * 359.97013 * 27 22 20 47 47 H 1.08996 * 117.49748 * 144.97020 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 3.5000 -0.8266 -1.1903 6 6 4.1732 -1.4286 -2.1908 7 8 3.5701 -1.8837 -3.1396 8 6 5.6750 -1.5374 -2.1301 9 16 6.2784 -2.3906 -3.6078 10 6 8.0101 -2.3777 -3.2829 11 1 8.3863 -1.9253 -2.3773 12 6 8.8908 -2.9501 -4.1903 13 7 10.1845 -2.9400 -3.9478 14 14 8.2401 -3.7334 -5.7563 15 1 8.1833 -2.7130 -6.8337 16 1 9.1420 -4.8389 -6.1686 17 1 6.8777 -4.2714 -5.5116 18 7 2.0182 -0.6905 1.1963 19 6 1.6643 -2.0931 1.4282 20 6 2.7930 -0.0356 2.0834 21 8 3.1503 1.1005 1.8539 22 6 3.2154 -0.7147 3.3608 23 6 4.3277 -1.7556 3.2181 24 6 5.6043 -1.0732 2.7226 25 9 6.5979 -2.0361 2.5164 26 6 3.1854 0.1155 4.6456 27 6 2.1357 -0.9742 4.4133 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.6054 -1.7199 -1.2950 32 1 1.7517 -0.1585 -2.1368 33 1 3.9824 -0.4623 -0.4317 34 1 6.1099 -0.5390 -2.0835 35 1 5.9629 -2.1007 -1.2424 36 1 10.7999 -3.3404 -4.5818 37 1 0.6920 -2.1462 1.9182 38 1 1.6197 -2.6191 0.4746 39 1 2.4176 -2.5575 2.0645 40 1 4.5163 -2.2206 4.1856 41 1 4.0218 -2.5182 2.5018 42 1 5.3994 -0.5559 1.7851 43 1 5.9444 -0.3539 3.4675 44 1 3.9579 -0.0799 5.3892 45 1 2.8598 1.1528 4.5671 46 1 1.1200 -0.6533 4.1820 47 1 2.2176 -1.8867 5.0038 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001718138635.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:48:13 Heat of formation + Delta-G solvation = -100.856779 kcal Electronic energy + Delta-G solvation = -29252.902989 eV Core-core repulsion = 25091.259194 eV Total energy + Delta-G solvation = -4161.643795 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 346.151 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -47.68141 -41.04456 -39.30376 -37.77568 -36.68871 -34.17194 -32.40534 -32.13245 -31.52598 -29.53792 -27.38682 -26.12382 -25.53780 -25.05329 -23.46004 -22.86515 -20.85871 -20.43396 -19.20825 -17.87313 -17.41408 -16.96985 -16.65499 -16.33637 -16.29160 -15.94125 -15.33976 -15.28941 -15.02895 -14.93620 -14.76886 -14.36100 -13.94245 -13.65917 -13.55570 -13.29816 -13.15349 -13.05078 -12.81215 -12.77080 -12.56854 -12.51202 -12.25150 -12.05847 -11.89186 -11.78703 -11.34471 -11.24030 -11.07726 -10.98620 -10.94264 -10.58058 -10.48904 -10.04139 -9.83753 -9.55118 -9.11985 -9.02192 -8.95639 -8.47916 -6.88921 -6.25306 -3.97040 2.12837 2.41689 2.78072 2.96781 3.09245 3.31619 3.35852 3.52090 3.66693 3.88011 4.01462 4.23741 4.29138 4.35683 4.39517 4.58083 4.62678 4.70449 4.72711 4.77654 4.84137 4.91456 5.01438 5.08662 5.11110 5.13507 5.18098 5.22143 5.24678 5.34357 5.37761 5.42159 5.48906 5.54703 5.60525 5.63285 5.73078 5.75789 5.79680 6.04780 6.09328 6.49188 6.90371 7.57212 7.73046 7.97948 8.46502 8.47255 9.20634 10.84075 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.012898 B = 0.003118 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.341260 B = 8977.679953 C =10587.382459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.122 3.878 3 H 0.109 0.891 4 C 0.112 3.888 5 N -0.733 5.733 6 C 0.532 3.468 7 O -0.520 6.520 8 C -0.124 4.124 9 S -0.140 6.140 10 C -0.520 4.520 11 H 0.088 0.912 12 C 0.096 3.904 13 N -0.880 5.880 14 Si 0.857 3.143 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.235 1.235 18 N -0.604 5.604 19 C 0.069 3.931 20 C 0.550 3.450 21 O -0.530 6.530 22 C -0.158 4.158 23 C -0.113 4.113 24 C 0.063 3.937 25 F -0.211 7.211 26 C -0.142 4.142 27 C -0.154 4.154 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.397 0.603 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.270 0.730 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.106 0.894 45 H 0.104 0.896 46 H 0.099 0.901 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.454 4.611 19.727 29.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.019 3.981 3 H 0.127 0.873 4 C -0.013 4.013 5 N -0.388 5.388 6 C 0.318 3.682 7 O -0.394 6.394 8 C -0.275 4.275 9 S 0.086 5.914 10 C -0.668 4.668 11 H 0.106 0.894 12 C -0.113 4.113 13 N -0.517 5.517 14 Si 0.681 3.319 15 H -0.192 1.192 16 H -0.200 1.200 17 H -0.159 1.159 18 N -0.337 5.337 19 C -0.074 4.074 20 C 0.337 3.663 21 O -0.406 6.406 22 C -0.161 4.161 23 C -0.150 4.150 24 C 0.008 3.992 25 F -0.192 7.192 26 C -0.180 4.180 27 C -0.191 4.191 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.231 0.769 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.090 0.910 43 H 0.097 0.903 44 H 0.124 0.876 45 H 0.122 0.878 46 H 0.118 0.882 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -22.073 4.383 17.933 28.775 hybrid contribution 0.957 0.217 0.749 1.235 sum -21.115 4.600 18.682 28.566 Atomic orbital electron populations 1.22035 0.93439 1.02953 1.03043 1.21433 0.95020 0.98405 0.83268 0.87297 1.21655 0.81177 1.01238 0.97264 1.45889 1.06870 1.61627 1.24377 1.20283 0.89458 0.76816 0.81682 1.90697 1.69869 1.46339 1.32540 1.23276 0.93351 1.05499 1.05377 1.84720 1.07039 1.74594 1.25048 1.22325 0.88572 1.44602 1.11307 0.89353 1.24710 0.94097 0.94554 0.97933 1.69945 1.01526 1.43523 1.36685 0.86739 0.81270 0.80204 0.83642 1.19232 1.19954 1.15948 1.47861 1.50651 1.12824 1.22358 1.21987 1.01310 0.81082 1.02975 1.19602 0.77438 0.85665 0.83603 1.90739 1.54708 1.18280 1.76880 1.21256 1.01660 1.03152 0.90074 1.21796 0.92564 0.96666 1.04006 1.21895 0.85371 0.89272 1.02683 1.92828 1.63428 1.66301 1.96645 1.23072 1.01583 0.97433 0.95863 1.23128 0.94792 1.01365 0.99834 0.91812 0.90725 0.91764 0.91114 0.90272 0.76851 0.88590 0.88547 0.91972 0.92267 0.90608 0.90024 0.89322 0.89409 0.90977 0.90345 0.87551 0.87779 0.88223 0.87521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.93 9.19 37.15 0.34 -0.58 16 2 C 0.12 1.01 2.80 -67.94 -0.19 0.82 16 3 H 0.11 1.08 6.91 -51.93 -0.36 0.72 16 4 C 0.11 1.18 4.90 -4.05 -0.02 1.16 16 5 N -0.73 -9.81 5.39 -60.30 -0.32 -10.13 16 6 C 0.53 9.64 7.85 -10.99 -0.09 9.56 16 7 O -0.52 -11.17 15.86 5.55 0.09 -11.08 16 8 C -0.12 -2.52 6.16 36.01 0.22 -2.30 16 9 S -0.14 -3.63 18.55 -107.50 -1.99 -5.62 16 10 C -0.52 -15.34 10.04 30.94 0.31 -15.03 16 11 H 0.09 2.73 8.03 -52.49 -0.42 2.31 16 12 C 0.10 2.85 5.50 -17.43 -0.10 2.75 16 13 N -0.88 -27.03 13.97 55.49 0.78 -26.25 16 14 Si 0.86 22.08 27.74 -169.99 -4.71 17.37 16 15 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.24 -6.04 6.74 56.52 0.38 -5.66 16 18 N -0.60 -4.73 2.24 -173.93 -0.39 -5.12 16 19 C 0.07 0.41 9.02 59.85 0.54 0.95 16 20 C 0.55 5.14 5.79 -10.98 -0.06 5.07 16 21 O -0.53 -6.77 16.28 5.55 0.09 -6.68 16 22 C -0.16 -1.10 0.80 -155.66 -0.12 -1.22 16 23 C -0.11 -0.82 5.25 -26.73 -0.14 -0.96 16 24 C 0.06 0.62 7.45 37.16 0.28 0.90 16 25 F -0.21 -2.87 17.36 2.25 0.04 -2.83 16 26 C -0.14 -0.85 9.84 -26.69 -0.26 -1.12 16 27 C -0.15 -0.73 9.48 -26.69 -0.25 -0.98 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 30 H 0.06 0.33 7.67 -51.93 -0.40 -0.06 16 31 H 0.07 0.75 6.92 -51.93 -0.36 0.39 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.40 4.97 7.87 -40.82 -0.32 4.65 16 34 H 0.10 1.86 8.14 -51.92 -0.42 1.43 16 35 H 0.10 1.86 8.14 -51.91 -0.42 1.43 16 36 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 37 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.08 0.50 6.56 -51.93 -0.34 0.16 16 39 H 0.08 0.45 4.43 -51.93 -0.23 0.22 16 40 H 0.09 0.52 8.10 -51.93 -0.42 0.10 16 41 H 0.09 0.64 6.01 -51.93 -0.31 0.33 16 42 H 0.07 0.78 7.54 -51.93 -0.39 0.39 16 43 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.11 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 400.32 15.07 6.03 6.03 Total: -1.00 -36.19 400.32 -7.30 -43.50 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -7.36 Total: 1.79 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: 0.45 Total: -0.97 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 0.06 Total: -41.51 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: 0.18 Total: -17.77 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.04 Total: -2.83 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.71 Total: 17.37 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.19 -7.30 -43.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718138635.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.358 kcal (2) G-P(sol) polarization free energy of solvation -36.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds